data_6PBB # _model_server_result.job_id qe8C3QKbKuQki9p5Lom4zw _model_server_result.datetime_utc '2024-10-20 00:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6PBB # _exptl.entry_id 6PBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.835 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PBB _cell.length_a 77.16 _cell.length_b 77.16 _cell.length_c 38.201 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C8 H4 I3 N O4' _chem_comp.formula_weight 558.835 _chem_comp.id I3C _chem_comp.mon_nstd_flag . _chem_comp.name '5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-Amino-2,4,6-triiodoisophthalic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I3 C6 I3C sing 152 n n I2 C4 I3C sing 153 n n I1 C2 I3C sing 154 n n O8 C7 I3C doub 155 n n O9 C7 I3C sing 156 n n C10 C3 I3C sing 157 n n C10 O11 I3C sing 158 n n C10 O12 I3C doub 159 n n N13 C5 I3C sing 160 n n C1 C6 I3C doub 161 n y C1 C2 I3C sing 162 n y C1 C7 I3C sing 163 n n C6 C5 I3C sing 164 n y C5 C4 I3C doub 165 n y C4 C3 I3C sing 166 n y C3 C2 I3C doub 167 n y O9 HO9 I3C sing 168 n n N13 HN13 I3C sing 169 n n N13 HN1A I3C sing 170 n n O11 HO11 I3C sing 171 n n # _atom_sites.entry_id 6PBB _atom_sites.fract_transf_matrix[1][1] 0.01296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3C A 1 201 1 I3C I3C . C 2 I3C A 1 202 2 I3C I3C . D 2 I3C A 1 203 3 I3C I3C . E 2 I3C A 1 204 4 I3C I3C . F 3 CL A 1 205 5 CL CL . G 4 HOH A 1 301 67 HOH HOH . G 4 HOH A 2 302 56 HOH HOH . G 4 HOH A 3 303 26 HOH HOH . G 4 HOH A 4 304 21 HOH HOH . G 4 HOH A 5 305 69 HOH HOH . G 4 HOH A 6 306 45 HOH HOH . G 4 HOH A 7 307 14 HOH HOH . G 4 HOH A 8 308 52 HOH HOH . G 4 HOH A 9 309 6 HOH HOH . G 4 HOH A 10 310 79 HOH HOH . G 4 HOH A 11 311 43 HOH HOH . G 4 HOH A 12 312 70 HOH HOH . G 4 HOH A 13 313 10 HOH HOH . G 4 HOH A 14 314 53 HOH HOH . G 4 HOH A 15 315 44 HOH HOH . G 4 HOH A 16 316 19 HOH HOH . G 4 HOH A 17 317 24 HOH HOH . G 4 HOH A 18 318 59 HOH HOH . G 4 HOH A 19 319 68 HOH HOH . G 4 HOH A 20 320 4 HOH HOH . G 4 HOH A 21 321 25 HOH HOH . G 4 HOH A 22 322 41 HOH HOH . G 4 HOH A 23 323 3 HOH HOH . G 4 HOH A 24 324 57 HOH HOH . G 4 HOH A 25 325 37 HOH HOH . G 4 HOH A 26 326 18 HOH HOH . G 4 HOH A 27 327 34 HOH HOH . G 4 HOH A 28 328 47 HOH HOH . G 4 HOH A 29 329 46 HOH HOH . G 4 HOH A 30 330 73 HOH HOH . G 4 HOH A 31 331 23 HOH HOH . G 4 HOH A 32 332 38 HOH HOH . G 4 HOH A 33 333 39 HOH HOH . G 4 HOH A 34 334 58 HOH HOH . G 4 HOH A 35 335 16 HOH HOH . G 4 HOH A 36 336 12 HOH HOH . G 4 HOH A 37 337 51 HOH HOH . G 4 HOH A 38 338 42 HOH HOH . G 4 HOH A 39 339 13 HOH HOH . G 4 HOH A 40 340 29 HOH HOH . G 4 HOH A 41 341 40 HOH HOH . G 4 HOH A 42 342 32 HOH HOH . G 4 HOH A 43 343 48 HOH HOH . G 4 HOH A 44 344 62 HOH HOH . G 4 HOH A 45 345 7 HOH HOH . G 4 HOH A 46 346 80 HOH HOH . G 4 HOH A 47 347 2 HOH HOH . G 4 HOH A 48 348 78 HOH HOH . G 4 HOH A 49 349 31 HOH HOH . G 4 HOH A 50 350 1 HOH HOH . G 4 HOH A 51 351 63 HOH HOH . G 4 HOH A 52 352 28 HOH HOH . G 4 HOH A 53 353 49 HOH HOH . G 4 HOH A 54 354 17 HOH HOH . G 4 HOH A 55 355 35 HOH HOH . G 4 HOH A 56 356 30 HOH HOH . G 4 HOH A 57 357 15 HOH HOH . G 4 HOH A 58 358 8 HOH HOH . G 4 HOH A 59 359 64 HOH HOH . G 4 HOH A 60 360 11 HOH HOH . G 4 HOH A 61 361 9 HOH HOH . G 4 HOH A 62 362 60 HOH HOH . G 4 HOH A 63 363 66 HOH HOH . G 4 HOH A 64 364 50 HOH HOH . G 4 HOH A 65 365 27 HOH HOH . G 4 HOH A 66 366 22 HOH HOH . G 4 HOH A 67 367 5 HOH HOH . G 4 HOH A 68 368 55 HOH HOH . G 4 HOH A 69 369 72 HOH HOH . G 4 HOH A 70 370 75 HOH HOH . G 4 HOH A 71 371 71 HOH HOH . G 4 HOH A 72 372 36 HOH HOH . G 4 HOH A 73 373 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I3 I3C . . . C 2 13.564 -6.744 7.813 0.57 45.44 ? I3 I3C 202 A 1 HETATM 2 I I2 I3C . . . C 2 18.389 -10.445 7.993 0.57 48.02 ? I2 I3C 202 A 1 HETATM 3 I I1 I3C . . . C 2 15.733 -9.245 2.703 0.57 55.62 ? I1 I3C 202 A 1 HETATM 4 O O8 I3C . . . C 2 14.11 -6.383 4.031 0.57 47.31 ? O8 I3C 202 A 1 HETATM 5 O O9 I3C . . . C 2 12.712 -8.008 4.436 0.57 48.22 ? O9 I3C 202 A 1 HETATM 6 C C10 I3C . . . C 2 17.832 -10.524 4.842 0.57 52.12 ? C10 I3C 202 A 1 HETATM 7 N N13 I3C . . . C 2 16.011 -8.454 8.985 0.57 45.47 ? N13 I3C 202 A 1 HETATM 8 C C1 I3C . . . C 2 14.908 -8.171 5.434 0.57 48.89 ? C1 I3C 202 A 1 HETATM 9 C C6 I3C . . . C 2 14.959 -7.989 6.814 0.57 47.32 ? C6 I3C 202 A 1 HETATM 10 C C5 I3C . . . C 2 15.947 -8.635 7.547 0.57 46.64 ? C5 I3C 202 A 1 HETATM 11 C C4 I3C . . . C 2 16.872 -9.451 6.908 0.57 47.68 ? C4 I3C 202 A 1 HETATM 12 C C3 I3C . . . C 2 16.813 -9.624 5.537 0.57 50.46 ? C3 I3C 202 A 1 HETATM 13 C C2 I3C . . . C 2 15.832 -8.987 4.799 0.57 51.61 ? C2 I3C 202 A 1 HETATM 14 C C7 I3C . . . C 2 13.843 -7.479 4.588 0.57 47.66 ? C7 I3C 202 A 1 HETATM 15 O O11 I3C . . . C 2 17.642 -11.769 4.792 0.57 52.62 ? O11 I3C 202 A 1 HETATM 16 O O12 I3C . . . C 2 18.863 -10.024 4.321 0.57 52.74 ? O12 I3C 202 A 1 HETATM 17 H HN13 I3C . . . C 2 16.443 -7.788 9.316 0.57 54.57 ? HN13 I3C 202 A 1 HETATM 18 H HN1A I3C . . . C 2 15.616 -9.013 9.506 0.57 54.57 ? HN1A I3C 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #