data_6PBD # _model_server_result.job_id u26vojJSVb63YzqZu282yg _model_server_result.datetime_utc '2024-11-08 03:58:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 6PBD # _exptl.entry_id 6PBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PBD _cell.length_a 67.683 _cell.length_b 117.939 _cell.length_c 119.598 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DG 2 X DG 2 1_555 D N3 DC 19 Y DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 2 X DG 2 1_555 D O2 DC 19 Y DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 2 X DG 2 1_555 D N4 DC 19 Y DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 3 X DA 3 1_555 D N3 DT 18 Y DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 3 X DA 3 1_555 D O4 DT 18 Y DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 4 X DT 4 1_555 D N1 DA 17 Y DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 4 X DT 4 1_555 D N6 DA 17 Y DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N3 DT 5 X DT 5 1_555 D N1 DA 16 Y DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C O4 DT 5 X DT 5 1_555 D N6 DA 16 Y DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 DC 6 X DC 6 1_555 D N1 DG 15 Y DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 DC 6 X DC 6 1_555 D O6 DG 15 Y DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 DC 6 X DC 6 1_555 D N2 DG 15 Y DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DA 7 X DA 7 1_555 D N3 DT 14 Y DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N6 DA 7 X DA 7 1_555 D O4 DT 14 Y DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DA 8 X DA 8 1_555 D N3 DT 13 Y DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N6 DA 8 X DA 8 1_555 D O4 DT 13 Y DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 DT 9 X DT 9 1_555 D N1 DA 12 Y DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O4 DT 9 X DT 9 1_555 D N6 DA 12 Y DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 DG 10 X DG 10 1_555 D N3 DC 11 Y DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N2 DG 10 X DG 10 1_555 D O2 DC 11 Y DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O6 DG 10 X DG 10 1_555 D N4 DC 11 Y DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 DC 15 X DC 15 1_555 D N1 DG 6 Y DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 DC 15 X DC 15 1_555 D O6 DG 6 Y DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 DC 15 X DC 15 1_555 D N2 DG 6 Y DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DC 16 X DC 16 1_555 D N1 DG 5 Y DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N4 DC 16 X DC 16 1_555 D O6 DG 5 Y DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O2 DC 16 X DC 16 1_555 D N2 DG 5 Y DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N1 DA 17 X DA 17 1_555 D N3 DT 4 Y DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N6 DA 17 X DA 17 1_555 D O4 DT 4 Y DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N1 DA 18 X DA 18 1_555 D N3 DT 3 Y DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N6 DA 18 X DA 18 1_555 D O4 DT 3 Y DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N1 DG 19 X DG 19 1_555 D N3 DC 2 Y DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N2 DG 19 X DG 19 1_555 D O2 DC 2 Y DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O6 DG 19 X DG 19 1_555 D N4 DC 2 Y DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 6PBD _atom_sites.fract_transf_matrix[1][1] 0.014775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SFG A 1 501 501 SFG SFG . F 4 SFG B 1 601 601 SFG SFG . G 5 EDO B 1 602 401 EDO EDO . H 6 HOH A 1 601 44 HOH HOH . H 6 HOH A 2 602 17 HOH HOH . H 6 HOH A 3 603 3 HOH HOH . H 6 HOH A 4 604 195 HOH HOH . H 6 HOH A 5 605 190 HOH HOH . H 6 HOH A 6 606 192 HOH HOH . H 6 HOH A 7 607 189 HOH HOH . H 6 HOH A 8 608 191 HOH HOH . H 6 HOH A 9 609 235 HOH HOH . H 6 HOH A 10 610 193 HOH HOH . H 6 HOH A 11 611 89 HOH HOH . H 6 HOH A 12 612 187 HOH HOH . H 6 HOH A 13 613 231 HOH HOH . H 6 HOH A 14 614 50 HOH HOH . H 6 HOH A 15 615 52 HOH HOH . H 6 HOH A 16 616 54 HOH HOH . H 6 HOH A 17 617 209 HOH HOH . H 6 HOH A 18 618 7 HOH HOH . H 6 HOH A 19 619 112 HOH HOH . H 6 HOH A 20 620 39 HOH HOH . H 6 HOH A 21 621 98 HOH HOH . H 6 HOH A 22 622 38 HOH HOH . H 6 HOH A 23 623 24 HOH HOH . H 6 HOH A 24 624 149 HOH HOH . H 6 HOH A 25 625 16 HOH HOH . H 6 HOH A 26 626 99 HOH HOH . H 6 HOH A 27 627 105 HOH HOH . H 6 HOH A 28 628 64 HOH HOH . H 6 HOH A 29 629 218 HOH HOH . H 6 HOH A 30 630 51 HOH HOH . H 6 HOH A 31 631 47 HOH HOH . H 6 HOH A 32 632 200 HOH HOH . H 6 HOH A 33 633 172 HOH HOH . H 6 HOH A 34 634 120 HOH HOH . H 6 HOH A 35 635 143 HOH HOH . H 6 HOH A 36 636 31 HOH HOH . H 6 HOH A 37 637 27 HOH HOH . H 6 HOH A 38 638 205 HOH HOH . H 6 HOH A 39 639 74 HOH HOH . H 6 HOH A 40 640 46 HOH HOH . H 6 HOH A 41 641 151 HOH HOH . H 6 HOH A 42 642 230 HOH HOH . H 6 HOH A 43 643 55 HOH HOH . H 6 HOH A 44 644 8 HOH HOH . H 6 HOH A 45 645 32 HOH HOH . H 6 HOH A 46 646 93 HOH HOH . H 6 HOH A 47 647 40 HOH HOH . H 6 HOH A 48 648 61 HOH HOH . H 6 HOH A 49 649 183 HOH HOH . H 6 HOH A 50 650 5 HOH HOH . H 6 HOH A 51 651 154 HOH HOH . H 6 HOH A 52 652 82 HOH HOH . H 6 HOH A 53 653 96 HOH HOH . H 6 HOH A 54 654 37 HOH HOH . H 6 HOH A 55 655 196 HOH HOH . H 6 HOH A 56 656 41 HOH HOH . H 6 HOH A 57 657 30 HOH HOH . H 6 HOH A 58 658 53 HOH HOH . H 6 HOH A 59 659 62 HOH HOH . H 6 HOH A 60 660 91 HOH HOH . H 6 HOH A 61 661 80 HOH HOH . H 6 HOH A 62 662 134 HOH HOH . H 6 HOH A 63 663 25 HOH HOH . H 6 HOH A 64 664 239 HOH HOH . H 6 HOH A 65 665 198 HOH HOH . H 6 HOH A 66 666 100 HOH HOH . H 6 HOH A 67 667 83 HOH HOH . H 6 HOH A 68 668 204 HOH HOH . H 6 HOH A 69 669 79 HOH HOH . H 6 HOH A 70 670 215 HOH HOH . H 6 HOH A 71 671 236 HOH HOH . I 6 HOH B 1 701 182 HOH HOH . I 6 HOH B 2 702 92 HOH HOH . I 6 HOH B 3 703 110 HOH HOH . I 6 HOH B 4 704 20 HOH HOH . I 6 HOH B 5 705 144 HOH HOH . I 6 HOH B 6 706 203 HOH HOH . I 6 HOH B 7 707 43 HOH HOH . I 6 HOH B 8 708 109 HOH HOH . I 6 HOH B 9 709 155 HOH HOH . I 6 HOH B 10 710 63 HOH HOH . I 6 HOH B 11 711 211 HOH HOH . I 6 HOH B 12 712 185 HOH HOH . I 6 HOH B 13 713 21 HOH HOH . I 6 HOH B 14 714 179 HOH HOH . I 6 HOH B 15 715 234 HOH HOH . I 6 HOH B 16 716 29 HOH HOH . I 6 HOH B 17 717 22 HOH HOH . I 6 HOH B 18 718 59 HOH HOH . I 6 HOH B 19 719 58 HOH HOH . I 6 HOH B 20 720 15 HOH HOH . I 6 HOH B 21 721 85 HOH HOH . I 6 HOH B 22 722 4 HOH HOH . I 6 HOH B 23 723 81 HOH HOH . I 6 HOH B 24 724 147 HOH HOH . I 6 HOH B 25 725 23 HOH HOH . I 6 HOH B 26 726 232 HOH HOH . I 6 HOH B 27 727 10 HOH HOH . I 6 HOH B 28 728 13 HOH HOH . I 6 HOH B 29 729 138 HOH HOH . I 6 HOH B 30 730 97 HOH HOH . I 6 HOH B 31 731 76 HOH HOH . I 6 HOH B 32 732 238 HOH HOH . I 6 HOH B 33 733 60 HOH HOH . I 6 HOH B 34 734 6 HOH HOH . I 6 HOH B 35 735 49 HOH HOH . I 6 HOH B 36 736 86 HOH HOH . I 6 HOH B 37 737 237 HOH HOH . I 6 HOH B 38 738 1 HOH HOH . I 6 HOH B 39 739 131 HOH HOH . I 6 HOH B 40 740 153 HOH HOH . I 6 HOH B 41 741 9 HOH HOH . I 6 HOH B 42 742 219 HOH HOH . I 6 HOH B 43 743 33 HOH HOH . I 6 HOH B 44 744 206 HOH HOH . I 6 HOH B 45 745 194 HOH HOH . I 6 HOH B 46 746 36 HOH HOH . I 6 HOH B 47 747 114 HOH HOH . I 6 HOH B 48 748 68 HOH HOH . I 6 HOH B 49 749 169 HOH HOH . I 6 HOH B 50 750 233 HOH HOH . I 6 HOH B 51 751 125 HOH HOH . I 6 HOH B 52 752 197 HOH HOH . I 6 HOH B 53 753 240 HOH HOH . I 6 HOH B 54 754 216 HOH HOH . I 6 HOH B 55 755 210 HOH HOH . I 6 HOH B 56 756 178 HOH HOH . I 6 HOH B 57 757 77 HOH HOH . I 6 HOH B 58 758 202 HOH HOH . I 6 HOH B 59 759 221 HOH HOH . I 6 HOH B 60 760 241 HOH HOH . J 6 HOH X 1 101 57 HOH HOH . J 6 HOH X 2 102 34 HOH HOH . J 6 HOH X 3 103 28 HOH HOH . J 6 HOH X 4 104 214 HOH HOH . J 6 HOH X 5 105 56 HOH HOH . J 6 HOH X 6 106 12 HOH HOH . J 6 HOH X 7 107 107 HOH HOH . J 6 HOH X 8 108 148 HOH HOH . J 6 HOH X 9 109 48 HOH HOH . J 6 HOH X 10 110 223 HOH HOH . J 6 HOH X 11 111 2 HOH HOH . J 6 HOH X 12 112 75 HOH HOH . J 6 HOH X 13 113 139 HOH HOH . J 6 HOH X 14 114 174 HOH HOH . K 6 HOH Y 1 101 70 HOH HOH . K 6 HOH Y 2 102 113 HOH HOH . K 6 HOH Y 3 103 106 HOH HOH . K 6 HOH Y 4 104 73 HOH HOH . K 6 HOH Y 5 105 72 HOH HOH . K 6 HOH Y 6 106 228 HOH HOH . K 6 HOH Y 7 107 45 HOH HOH . K 6 HOH Y 8 108 18 HOH HOH . K 6 HOH Y 9 109 123 HOH HOH . K 6 HOH Y 10 110 65 HOH HOH . K 6 HOH Y 11 111 130 HOH HOH . K 6 HOH Y 12 112 170 HOH HOH . K 6 HOH Y 13 113 94 HOH HOH . K 6 HOH Y 14 114 117 HOH HOH . K 6 HOH Y 15 115 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 6.723 5.379 32.724 1 76.71 ? C1 EDO 602 B 1 HETATM 2 O O1 EDO . . . G 5 6.704 6.811 32.805 1 77.69 ? O1 EDO 602 B 1 HETATM 3 C C2 EDO . . . G 5 6.436 4.785 34.099 1 67.25 ? C2 EDO 602 B 1 HETATM 4 O O2 EDO . . . G 5 7.108 3.526 34.23 1 55.21 ? O2 EDO 602 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 4 #