data_6PBO
#
_model_server_result.job_id            1J-oePQ6gacKAzbobvDXkQ 
_model_server_result.datetime_utc      '2024-11-15 22:54:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pbo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    6PBO 
#
_exptl.entry_id    6PBO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PBO 
_cell.length_a            78.94 
_cell.length_b            78.94 
_cell.length_c            108.27 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PBO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 224 n n 
PA O2A NAP sing 225 n n 
PA O5B NAP sing 226 n n 
PA O3 NAP sing 227 n n 
O2A HOA2 NAP sing 228 n n 
O5B C5B NAP sing 229 n n 
C5B C4B NAP sing 230 n n 
C5B H51A NAP sing 231 n n 
C5B H52A NAP sing 232 n n 
C4B O4B NAP sing 233 n n 
C4B C3B NAP sing 234 n n 
C4B H4B NAP sing 235 n n 
O4B C1B NAP sing 236 n n 
C3B O3B NAP sing 237 n n 
C3B C2B NAP sing 238 n n 
C3B H3B NAP sing 239 n n 
O3B HO3A NAP sing 240 n n 
C2B O2B NAP sing 241 n n 
C2B C1B NAP sing 242 n n 
C2B H2B NAP sing 243 n n 
O2B P2B NAP sing 244 n n 
C1B N9A NAP sing 245 n n 
C1B H1B NAP sing 246 n n 
N9A C8A NAP sing 247 n y 
N9A C4A NAP sing 248 n y 
C8A N7A NAP doub 249 n y 
C8A H8A NAP sing 250 n n 
N7A C5A NAP sing 251 n y 
C5A C6A NAP sing 252 n y 
C5A C4A NAP doub 253 n y 
C6A N6A NAP sing 254 n n 
C6A N1A NAP doub 255 n y 
N6A H61A NAP sing 256 n n 
N6A H62A NAP sing 257 n n 
N1A C2A NAP sing 258 n y 
C2A N3A NAP doub 259 n y 
C2A H2A NAP sing 260 n n 
N3A C4A NAP sing 261 n y 
O3 PN NAP sing 262 n n 
PN O1N NAP doub 263 n n 
PN O2N NAP sing 264 n n 
PN O5D NAP sing 265 n n 
O5D C5D NAP sing 266 n n 
C5D C4D NAP sing 267 n n 
C5D H51N NAP sing 268 n n 
C5D H52N NAP sing 269 n n 
C4D O4D NAP sing 270 n n 
C4D C3D NAP sing 271 n n 
C4D H4D NAP sing 272 n n 
O4D C1D NAP sing 273 n n 
C3D O3D NAP sing 274 n n 
C3D C2D NAP sing 275 n n 
C3D H3D NAP sing 276 n n 
O3D HO3N NAP sing 277 n n 
C2D O2D NAP sing 278 n n 
C2D C1D NAP sing 279 n n 
C2D H2D NAP sing 280 n n 
O2D HO2N NAP sing 281 n n 
C1D N1N NAP sing 282 n n 
C1D H1D NAP sing 283 n n 
N1N C2N NAP sing 284 n y 
N1N C6N NAP doub 285 n y 
C2N C3N NAP doub 286 n y 
C2N H2N NAP sing 287 n n 
C3N C7N NAP sing 288 n n 
C3N C4N NAP sing 289 n y 
C7N O7N NAP doub 290 n n 
C7N N7N NAP sing 291 n n 
N7N H71N NAP sing 292 n n 
N7N H72N NAP sing 293 n n 
C4N C5N NAP doub 294 n y 
C4N H4N NAP sing 295 n n 
C5N C6N NAP sing 296 n y 
C5N H5N NAP sing 297 n n 
C6N H6N NAP sing 298 n n 
P2B O1X NAP doub 299 n n 
P2B O2X NAP sing 300 n n 
P2B O3X NAP sing 301 n n 
O2X HOP2 NAP sing 302 n n 
O3X HOP3 NAP sing 303 n n 
#
_atom_sites.entry_id                     6PBO 
_atom_sites.fract_transf_matrix[1][1]    0.012668 
_atom_sites.fract_transf_matrix[1][2]    0.007314 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O71 X 1 201 1 O71 DRG . 
C 3 XNP X 1 202 1 XNP ANH . 
D 4 NAP X 1 203 208 NAP NAP . 
E 5 HOH X 1 301 5 HOH HOH . 
E 5 HOH X 2 302 40 HOH HOH . 
E 5 HOH X 3 303 26 HOH HOH . 
E 5 HOH X 4 304 27 HOH HOH . 
E 5 HOH X 5 305 32 HOH HOH . 
E 5 HOH X 6 306 6 HOH HOH . 
E 5 HOH X 7 307 18 HOH HOH . 
E 5 HOH X 8 308 13 HOH HOH . 
E 5 HOH X 9 309 2 HOH HOH . 
E 5 HOH X 10 310 38 HOH HOH . 
E 5 HOH X 11 311 9 HOH HOH . 
E 5 HOH X 12 312 37 HOH HOH . 
E 5 HOH X 13 313 25 HOH HOH . 
E 5 HOH X 14 314 29 HOH HOH . 
E 5 HOH X 15 315 8 HOH HOH . 
E 5 HOH X 16 316 20 HOH HOH . 
E 5 HOH X 17 317 33 HOH HOH . 
E 5 HOH X 18 318 31 HOH HOH . 
E 5 HOH X 19 319 34 HOH HOH . 
E 5 HOH X 20 320 21 HOH HOH . 
E 5 HOH X 21 321 14 HOH HOH . 
E 5 HOH X 22 322 3 HOH HOH . 
E 5 HOH X 23 323 5 HOH HOH . 
E 5 HOH X 24 324 42 HOH HOH . 
E 5 HOH X 25 325 23 HOH HOH . 
E 5 HOH X 26 326 2 HOH HOH . 
E 5 HOH X 27 327 35 HOH HOH . 
E 5 HOH X 28 328 16 HOH HOH . 
E 5 HOH X 29 329 19 HOH HOH . 
E 5 HOH X 30 330 30 HOH HOH . 
E 5 HOH X 31 331 28 HOH HOH . 
E 5 HOH X 32 332 7 HOH HOH . 
E 5 HOH X 33 333 24 HOH HOH . 
E 5 HOH X 34 334 15 HOH HOH . 
E 5 HOH X 35 335 22 HOH HOH . 
E 5 HOH X 36 336 17 HOH HOH . 
E 5 HOH X 37 337 10 HOH HOH . 
E 5 HOH X 38 338 1 HOH HOH . 
E 5 HOH X 39 339 4 HOH HOH . 
E 5 HOH X 40 340 4 HOH HOH . 
E 5 HOH X 41 341 12 HOH HOH . 
E 5 HOH X 42 342 36 HOH HOH . 
E 5 HOH X 43 343 11 HOH HOH . 
E 5 HOH X 44 344 41 HOH HOH . 
E 5 HOH X 45 345 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . A . D 4 -23.519 -21.563 42.492 0.64 18.71 ? PA NAP 203 X 1 
HETATM 2 O O1A NAP . A . D 4 -22.336 -21.027 41.773 0.64 14.92 ? O1A NAP 203 X 1 
HETATM 3 O O2A NAP . A . D 4 -24.699 -20.696 42.251 0.64 16.46 ? O2A NAP 203 X 1 
HETATM 4 O O5B NAP . A . D 4 -23.867 -23.093 42.08 0.64 17.6 ? O5B NAP 203 X 1 
HETATM 5 C C5B NAP . A . D 4 -22.934 -24.155 42.206 0.64 18.67 ? C5B NAP 203 X 1 
HETATM 6 C C4B NAP . A . D 4 -23.487 -25.362 41.459 0.64 19.83 ? C4B NAP 203 X 1 
HETATM 7 O O4B NAP . A . D 4 -23.494 -25.075 40.075 0.64 20.6 ? O4B NAP 203 X 1 
HETATM 8 C C3B NAP . A . D 4 -22.699 -26.659 41.584 0.64 20.23 ? C3B NAP 203 X 1 
HETATM 9 O O3B NAP . A . D 4 -23.102 -27.384 42.718 0.64 18.56 ? O3B NAP 203 X 1 
HETATM 10 C C2B NAP . A . D 4 -23.059 -27.372 40.294 0.64 19.56 ? C2B NAP 203 X 1 
HETATM 11 O O2B NAP . A . D 4 -24.349 -27.924 40.398 0.64 19.86 ? O2B NAP 203 X 1 
HETATM 12 C C1B NAP . A . D 4 -23.218 -26.227 39.313 0.64 19.66 ? C1B NAP 203 X 1 
HETATM 13 N N9A NAP . A . D 4 -21.974 -26.071 38.545 0.64 19.75 ? N9A NAP 203 X 1 
HETATM 14 C C8A NAP . A . D 4 -20.982 -25.135 38.716 0.64 20.05 ? C8A NAP 203 X 1 
HETATM 15 N N7A NAP . A . D 4 -20.027 -25.363 37.778 0.64 21.01 ? N7A NAP 203 X 1 
HETATM 16 C C5A NAP . A . D 4 -20.398 -26.43 37.025 0.64 20.74 ? C5A NAP 203 X 1 
HETATM 17 C C6A NAP . A . D 4 -19.806 -27.084 35.954 0.64 23 ? C6A NAP 203 X 1 
HETATM 18 N N6A NAP . A . D 4 -18.631 -26.675 35.483 0.64 22.17 ? N6A NAP 203 X 1 
HETATM 19 N N1A NAP . A . D 4 -20.445 -28.163 35.374 0.64 22.68 ? N1A NAP 203 X 1 
HETATM 20 C C2A NAP . A . D 4 -21.665 -28.59 35.855 0.64 21.44 ? C2A NAP 203 X 1 
HETATM 21 N N3A NAP . A . D 4 -22.247 -27.935 36.92 0.64 21.01 ? N3A NAP 203 X 1 
HETATM 22 C C4A NAP . A . D 4 -21.618 -26.879 37.497 0.64 22.04 ? C4A NAP 203 X 1 
HETATM 23 O O3 NAP . A . D 4 -23.237 -21.692 44.07 0.64 19.03 ? O3 NAP 203 X 1 
HETATM 24 P PN NAP . A . D 4 -22.463 -20.846 45.197 0.64 19.67 ? PN NAP 203 X 1 
HETATM 25 O O1N NAP . A . D 4 -22.755 -21.502 46.492 0.64 17.95 ? O1N NAP 203 X 1 
HETATM 26 O O2N NAP . A . D 4 -21.054 -20.641 44.815 0.64 17.29 ? O2N NAP 203 X 1 
HETATM 27 O O5D NAP . A . D 4 -23.204 -19.409 45.128 0.64 19.64 ? O5D NAP 203 X 1 
HETATM 28 C C5D NAP . A . D 4 -24.453 -19.19 45.745 0.64 18.94 ? C5D NAP 203 X 1 
HETATM 29 C C4D NAP . A . D 4 -24.465 -17.857 46.489 0.64 20.5 ? C4D NAP 203 X 1 
HETATM 30 O O4D NAP . A . D 4 -24.21 -16.771 45.604 0.64 16.75 ? O4D NAP 203 X 1 
HETATM 31 C C3D NAP . A . D 4 -25.83 -17.605 47.119 0.64 18.74 ? C3D NAP 203 X 1 
HETATM 32 O O3D NAP . A . D 4 -25.674 -17.125 48.436 0.64 18.57 ? O3D NAP 203 X 1 
HETATM 33 C C2D NAP . A . D 4 -26.445 -16.508 46.281 0.64 19.9 ? C2D NAP 203 X 1 
HETATM 34 O O2D NAP . A . D 4 -27.212 -15.648 47.088 0.64 21.7 ? O2D NAP 203 X 1 
HETATM 35 C C1D NAP . A . D 4 -25.213 -15.782 45.784 0.64 17.33 ? C1D NAP 203 X 1 
HETATM 36 N N1N NAP . A . D 4 -25.466 -14.982 44.566 0.64 19.85 ? N1N NAP 203 X 1 
HETATM 37 C C2N NAP . A . D 4 -25.336 -13.624 44.662 0.64 17.59 ? C2N NAP 203 X 1 
HETATM 38 C C3N NAP . A . D 4 -25.542 -12.812 43.558 0.64 20.56 ? C3N NAP 203 X 1 
HETATM 39 C C7N NAP . A . D 4 -25.146 -11.367 43.634 0.64 17.8 ? C7N NAP 203 X 1 
HETATM 40 O O7N NAP . A . D 4 -24.976 -10.653 42.432 0.64 18.65 ? O7N NAP 203 X 1 
HETATM 41 N N7N NAP . A . D 4 -24.969 -10.799 44.831 0.64 18.41 ? N7N NAP 203 X 1 
HETATM 42 C C4N NAP . A . D 4 -25.89 -13.394 42.337 0.64 20.07 ? C4N NAP 203 X 1 
HETATM 43 C C5N NAP . A . D 4 -26.013 -14.78 42.254 0.64 16.15 ? C5N NAP 203 X 1 
HETATM 44 C C6N NAP . A . D 4 -25.798 -15.569 43.379 0.64 16.96 ? C6N NAP 203 X 1 
HETATM 45 P P2B NAP . A . D 4 -24.626 -29.439 40.847 0.64 20.65 ? P2B NAP 203 X 1 
HETATM 46 O O1X NAP . A . D 4 -24.017 -29.658 42.215 0.64 15.07 ? O1X NAP 203 X 1 
HETATM 47 O O2X NAP . A . D 4 -26.122 -29.627 40.905 0.64 20.89 ? O2X NAP 203 X 1 
HETATM 48 O O3X NAP . A . D 4 -24.024 -30.343 39.808 0.64 20.34 ? O3X NAP 203 X 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#