data_6PBT # _model_server_result.job_id pkqYqePuiUpNm-01JDyYGQ _model_server_result.datetime_utc '2024-11-27 21:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6PBT # _exptl.entry_id 6PBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-3-amino-3-carboxypropyl]-L-histidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.82 _cell.angle_gamma 90 _cell.entry_id 6PBT _cell.length_a 181.619 _cell.length_b 53.927 _cell.length_c 96.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N4 O4' _chem_comp.formula_weight 256.258 _chem_comp.id O77 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-3-amino-3-carboxypropyl]-L-histidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N09 C08 O77 sing 326 n y N09 C05 O77 sing 327 n y C08 N07 O77 doub 328 n y O18 C02 O77 doub 329 n n C04 C05 O77 sing 330 n n C04 C03 O77 sing 331 n n C05 C06 O77 doub 332 n y C02 O01 O77 sing 333 n n C02 C03 O77 sing 334 n n N07 C06 O77 sing 335 n y C03 N10 O77 sing 336 n n N10 C11 O77 sing 337 n n C11 C12 O77 sing 338 n n C12 C13 O77 sing 339 n n N14 C13 O77 sing 340 n n C13 C15 O77 sing 341 n n C15 O17 O77 doub 342 n n C15 O16 O77 sing 343 n n C03 H031 O77 sing 344 n n C04 H041 O77 sing 345 n n C04 H042 O77 sing 346 n n C06 H061 O77 sing 347 n n C08 H081 O77 sing 348 n n C11 H112 O77 sing 349 n n C11 H111 O77 sing 350 n n C12 H121 O77 sing 351 n n C12 H122 O77 sing 352 n n C13 H131 O77 sing 353 n n N09 H091 O77 sing 354 n n N10 H2 O77 sing 355 n n N14 H3 O77 sing 356 n n N14 H141 O77 sing 357 n n O01 H4 O77 sing 358 n n O16 H5 O77 sing 359 n n # _atom_sites.entry_id 6PBT _atom_sites.fract_transf_matrix[1][1] 0.005506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000854 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 1 NAP NAP . D 3 O77 A 1 502 1 O77 LHN . E 4 EDO A 1 503 1 EDO EDO . F 2 NAP B 1 501 2 NAP NAP . G 4 EDO B 1 502 2 EDO EDO . H 5 HOH A 1 601 142 HOH HOH . H 5 HOH A 2 602 7 HOH HOH . H 5 HOH A 3 603 1 HOH HOH . H 5 HOH A 4 604 62 HOH HOH . H 5 HOH A 5 605 167 HOH HOH . H 5 HOH A 6 606 14 HOH HOH . H 5 HOH A 7 607 130 HOH HOH . H 5 HOH A 8 608 135 HOH HOH . H 5 HOH A 9 609 143 HOH HOH . H 5 HOH A 10 610 166 HOH HOH . H 5 HOH A 11 611 183 HOH HOH . H 5 HOH A 12 612 106 HOH HOH . H 5 HOH A 13 613 107 HOH HOH . H 5 HOH A 14 614 200 HOH HOH . H 5 HOH A 15 615 64 HOH HOH . H 5 HOH A 16 616 29 HOH HOH . H 5 HOH A 17 617 133 HOH HOH . H 5 HOH A 18 618 181 HOH HOH . H 5 HOH A 19 619 91 HOH HOH . H 5 HOH A 20 620 97 HOH HOH . H 5 HOH A 21 621 102 HOH HOH . H 5 HOH A 22 622 158 HOH HOH . H 5 HOH A 23 623 150 HOH HOH . H 5 HOH A 24 624 33 HOH HOH . H 5 HOH A 25 625 58 HOH HOH . H 5 HOH A 26 626 11 HOH HOH . H 5 HOH A 27 627 83 HOH HOH . H 5 HOH A 28 628 13 HOH HOH . H 5 HOH A 29 629 118 HOH HOH . H 5 HOH A 30 630 132 HOH HOH . H 5 HOH A 31 631 34 HOH HOH . H 5 HOH A 32 632 203 HOH HOH . H 5 HOH A 33 633 8 HOH HOH . H 5 HOH A 34 634 18 HOH HOH . H 5 HOH A 35 635 160 HOH HOH . H 5 HOH A 36 636 115 HOH HOH . H 5 HOH A 37 637 93 HOH HOH . H 5 HOH A 38 638 123 HOH HOH . H 5 HOH A 39 639 63 HOH HOH . H 5 HOH A 40 640 66 HOH HOH . H 5 HOH A 41 641 73 HOH HOH . H 5 HOH A 42 642 180 HOH HOH . H 5 HOH A 43 643 131 HOH HOH . H 5 HOH A 44 644 202 HOH HOH . H 5 HOH A 45 645 54 HOH HOH . H 5 HOH A 46 646 90 HOH HOH . H 5 HOH A 47 647 72 HOH HOH . H 5 HOH A 48 648 141 HOH HOH . H 5 HOH A 49 649 111 HOH HOH . H 5 HOH A 50 650 146 HOH HOH . H 5 HOH A 51 651 129 HOH HOH . H 5 HOH A 52 652 138 HOH HOH . H 5 HOH A 53 653 88 HOH HOH . H 5 HOH A 54 654 3 HOH HOH . H 5 HOH A 55 655 48 HOH HOH . H 5 HOH A 56 656 190 HOH HOH . H 5 HOH A 57 657 43 HOH HOH . H 5 HOH A 58 658 4 HOH HOH . H 5 HOH A 59 659 46 HOH HOH . H 5 HOH A 60 660 149 HOH HOH . H 5 HOH A 61 661 40 HOH HOH . H 5 HOH A 62 662 47 HOH HOH . H 5 HOH A 63 663 27 HOH HOH . H 5 HOH A 64 664 22 HOH HOH . H 5 HOH A 65 665 15 HOH HOH . H 5 HOH A 66 666 168 HOH HOH . H 5 HOH A 67 667 38 HOH HOH . H 5 HOH A 68 668 52 HOH HOH . H 5 HOH A 69 669 156 HOH HOH . H 5 HOH A 70 670 108 HOH HOH . H 5 HOH A 71 671 92 HOH HOH . H 5 HOH A 72 672 17 HOH HOH . H 5 HOH A 73 673 109 HOH HOH . H 5 HOH A 74 674 51 HOH HOH . H 5 HOH A 75 675 136 HOH HOH . H 5 HOH A 76 676 2 HOH HOH . H 5 HOH A 77 677 174 HOH HOH . H 5 HOH A 78 678 117 HOH HOH . H 5 HOH A 79 679 78 HOH HOH . H 5 HOH A 80 680 192 HOH HOH . H 5 HOH A 81 681 186 HOH HOH . H 5 HOH A 82 682 162 HOH HOH . H 5 HOH A 83 683 153 HOH HOH . H 5 HOH A 84 684 94 HOH HOH . H 5 HOH A 85 685 201 HOH HOH . H 5 HOH A 86 686 164 HOH HOH . H 5 HOH A 87 687 57 HOH HOH . H 5 HOH A 88 688 210 HOH HOH . H 5 HOH A 89 689 140 HOH HOH . H 5 HOH A 90 690 28 HOH HOH . H 5 HOH A 91 691 191 HOH HOH . H 5 HOH A 92 692 81 HOH HOH . H 5 HOH A 93 693 179 HOH HOH . H 5 HOH A 94 694 120 HOH HOH . H 5 HOH A 95 695 37 HOH HOH . H 5 HOH A 96 696 194 HOH HOH . H 5 HOH A 97 697 36 HOH HOH . H 5 HOH A 98 698 122 HOH HOH . H 5 HOH A 99 699 175 HOH HOH . H 5 HOH A 100 700 85 HOH HOH . H 5 HOH A 101 701 116 HOH HOH . H 5 HOH A 102 702 161 HOH HOH . H 5 HOH A 103 703 176 HOH HOH . H 5 HOH A 104 704 188 HOH HOH . H 5 HOH A 105 705 157 HOH HOH . H 5 HOH A 106 706 209 HOH HOH . H 5 HOH A 107 707 195 HOH HOH . H 5 HOH A 108 708 121 HOH HOH . H 5 HOH A 109 709 119 HOH HOH . H 5 HOH A 110 710 89 HOH HOH . H 5 HOH A 111 711 67 HOH HOH . H 5 HOH A 112 712 205 HOH HOH . H 5 HOH A 113 713 77 HOH HOH . I 5 HOH B 1 601 193 HOH HOH . I 5 HOH B 2 602 45 HOH HOH . I 5 HOH B 3 603 128 HOH HOH . I 5 HOH B 4 604 82 HOH HOH . I 5 HOH B 5 605 79 HOH HOH . I 5 HOH B 6 606 137 HOH HOH . I 5 HOH B 7 607 147 HOH HOH . I 5 HOH B 8 608 169 HOH HOH . I 5 HOH B 9 609 126 HOH HOH . I 5 HOH B 10 610 125 HOH HOH . I 5 HOH B 11 611 110 HOH HOH . I 5 HOH B 12 612 145 HOH HOH . I 5 HOH B 13 613 155 HOH HOH . I 5 HOH B 14 614 50 HOH HOH . I 5 HOH B 15 615 30 HOH HOH . I 5 HOH B 16 616 19 HOH HOH . I 5 HOH B 17 617 98 HOH HOH . I 5 HOH B 18 618 42 HOH HOH . I 5 HOH B 19 619 104 HOH HOH . I 5 HOH B 20 620 76 HOH HOH . I 5 HOH B 21 621 21 HOH HOH . I 5 HOH B 22 622 10 HOH HOH . I 5 HOH B 23 623 148 HOH HOH . I 5 HOH B 24 624 68 HOH HOH . I 5 HOH B 25 625 197 HOH HOH . I 5 HOH B 26 626 6 HOH HOH . I 5 HOH B 27 627 114 HOH HOH . I 5 HOH B 28 628 87 HOH HOH . I 5 HOH B 29 629 71 HOH HOH . I 5 HOH B 30 630 159 HOH HOH . I 5 HOH B 31 631 70 HOH HOH . I 5 HOH B 32 632 173 HOH HOH . I 5 HOH B 33 633 35 HOH HOH . I 5 HOH B 34 634 184 HOH HOH . I 5 HOH B 35 635 9 HOH HOH . I 5 HOH B 36 636 95 HOH HOH . I 5 HOH B 37 637 170 HOH HOH . I 5 HOH B 38 638 31 HOH HOH . I 5 HOH B 39 639 65 HOH HOH . I 5 HOH B 40 640 12 HOH HOH . I 5 HOH B 41 641 182 HOH HOH . I 5 HOH B 42 642 60 HOH HOH . I 5 HOH B 43 643 59 HOH HOH . I 5 HOH B 44 644 134 HOH HOH . I 5 HOH B 45 645 127 HOH HOH . I 5 HOH B 46 646 103 HOH HOH . I 5 HOH B 47 647 154 HOH HOH . I 5 HOH B 48 648 84 HOH HOH . I 5 HOH B 49 649 101 HOH HOH . I 5 HOH B 50 650 139 HOH HOH . I 5 HOH B 51 651 151 HOH HOH . I 5 HOH B 52 652 100 HOH HOH . I 5 HOH B 53 653 32 HOH HOH . I 5 HOH B 54 654 41 HOH HOH . I 5 HOH B 55 655 56 HOH HOH . I 5 HOH B 56 656 53 HOH HOH . I 5 HOH B 57 657 39 HOH HOH . I 5 HOH B 58 658 69 HOH HOH . I 5 HOH B 59 659 16 HOH HOH . I 5 HOH B 60 660 112 HOH HOH . I 5 HOH B 61 661 99 HOH HOH . I 5 HOH B 62 662 20 HOH HOH . I 5 HOH B 63 663 5 HOH HOH . I 5 HOH B 64 664 96 HOH HOH . I 5 HOH B 65 665 26 HOH HOH . I 5 HOH B 66 666 86 HOH HOH . I 5 HOH B 67 667 24 HOH HOH . I 5 HOH B 68 668 74 HOH HOH . I 5 HOH B 69 669 163 HOH HOH . I 5 HOH B 70 670 55 HOH HOH . I 5 HOH B 71 671 49 HOH HOH . I 5 HOH B 72 672 165 HOH HOH . I 5 HOH B 73 673 105 HOH HOH . I 5 HOH B 74 674 177 HOH HOH . I 5 HOH B 75 675 152 HOH HOH . I 5 HOH B 76 676 172 HOH HOH . I 5 HOH B 77 677 178 HOH HOH . I 5 HOH B 78 678 199 HOH HOH . I 5 HOH B 79 679 204 HOH HOH . I 5 HOH B 80 680 185 HOH HOH . I 5 HOH B 81 681 189 HOH HOH . I 5 HOH B 82 682 25 HOH HOH . I 5 HOH B 83 683 23 HOH HOH . I 5 HOH B 84 684 144 HOH HOH . I 5 HOH B 85 685 113 HOH HOH . I 5 HOH B 86 686 44 HOH HOH . I 5 HOH B 87 687 124 HOH HOH . I 5 HOH B 88 688 61 HOH HOH . I 5 HOH B 89 689 171 HOH HOH . I 5 HOH B 90 690 196 HOH HOH . I 5 HOH B 91 691 198 HOH HOH . I 5 HOH B 92 692 208 HOH HOH . I 5 HOH B 93 693 207 HOH HOH . I 5 HOH B 94 694 206 HOH HOH . I 5 HOH B 95 695 187 HOH HOH . I 5 HOH B 96 696 75 HOH HOH . I 5 HOH B 97 697 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 O77 . . . D 3 63.208 40.174 15.596 1 45.72 ? C02 O77 502 A 1 HETATM 2 C C03 O77 . . . D 3 64.598 40.43 16.118 1 56.16 ? C03 O77 502 A 1 HETATM 3 C C04 O77 . . . D 3 65.386 39.878 14.943 1 51.66 ? C04 O77 502 A 1 HETATM 4 C C05 O77 . . . D 3 66.856 39.73 15.095 1 49.37 ? C05 O77 502 A 1 HETATM 5 C C06 O77 . . . D 3 67.609 40.043 16.175 1 44.02 ? C06 O77 502 A 1 HETATM 6 C C08 O77 . . . D 3 68.833 39.308 14.624 1 57.85 ? C08 O77 502 A 1 HETATM 7 C C11 O77 . . . D 3 63.724 39.928 18.277 1 57.56 ? C11 O77 502 A 1 HETATM 8 C C12 O77 . . . D 3 64.062 39.209 19.568 1 56.99 ? C12 O77 502 A 1 HETATM 9 C C13 O77 . . . D 3 65.066 40.005 20.354 1 63.11 ? C13 O77 502 A 1 HETATM 10 C C15 O77 . . . D 3 64.83 39.771 21.803 1 64.38 ? C15 O77 502 A 1 HETATM 11 N N07 O77 . . . D 3 68.819 39.749 15.838 1 51.98 ? N07 O77 502 A 1 HETATM 12 N N09 O77 . . . D 3 67.643 39.298 14.179 1 53.57 ? N09 O77 502 A 1 HETATM 13 N N10 O77 . . . D 3 64.758 39.711 17.33 1 53.76 ? N10 O77 502 A 1 HETATM 14 N N14 O77 . . . D 3 66.429 39.642 20.066 1 56.58 ? N14 O77 502 A 1 HETATM 15 O O01 O77 . . . D 3 62.661 39.092 15.649 1 32.82 ? O01 O77 502 A 1 HETATM 16 O O16 O77 . . . D 3 64.26 40.649 22.46 1 53.33 ? O16 O77 502 A 1 HETATM 17 O O17 O77 . . . D 3 65.251 38.739 22.306 1 47.29 ? O17 O77 502 A 1 HETATM 18 O O18 O77 . . . D 3 62.65 41.118 15.133 1 41.97 ? O18 O77 502 A 1 HETATM 19 H H031 O77 . . . D 3 64.759 41.379 16.24 1 67.43 ? H031 O77 502 A 1 HETATM 20 H H041 O77 . . . D 3 65.226 40.458 14.182 1 62.03 ? H041 O77 502 A 1 HETATM 21 H H042 O77 . . . D 3 65.023 39.003 14.73 1 62.03 ? H042 O77 502 A 1 HETATM 22 H H061 O77 . . . D 3 67.315 40.376 16.992 1 52.86 ? H061 O77 502 A 1 HETATM 23 H H081 O77 . . . D 3 69.589 39.033 14.157 1 69.45 ? H081 O77 502 A 1 HETATM 24 H H112 O77 . . . D 3 62.885 39.582 17.934 1 69.11 ? H112 O77 502 A 1 HETATM 25 H H111 O77 . . . D 3 63.636 40.879 18.449 1 69.11 ? H111 O77 502 A 1 HETATM 26 H H121 O77 . . . D 3 63.255 39.099 20.095 1 68.43 ? H121 O77 502 A 1 HETATM 27 H H122 O77 . . . D 3 64.434 38.337 19.362 1 68.43 ? H122 O77 502 A 1 HETATM 28 H H131 O77 . . . D 3 64.943 40.948 20.162 1 75.77 ? H131 O77 502 A 1 HETATM 29 H H091 O77 . . . D 3 67.403 39.039 13.395 1 64.32 ? H091 O77 502 A 1 HETATM 30 H H2 O77 . . . D 3 64.82 38.841 17.153 1 64.54 ? H2 O77 502 A 1 HETATM 31 H H3 O77 . . . D 3 66.958 40.345 20.198 1 67.94 ? H3 O77 502 A 1 HETATM 32 H H141 O77 . . . D 3 66.679 38.977 20.603 1 67.94 ? H141 O77 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #