data_6PBT # _model_server_result.job_id G47Ptp40ktsIBp-wopDjWw _model_server_result.datetime_utc '2024-10-10 19:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6PBT # _exptl.entry_id 6PBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.82 _cell.angle_gamma 90 _cell.entry_id 6PBT _cell.length_a 181.619 _cell.length_b 53.927 _cell.length_c 96.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6PBT _atom_sites.fract_transf_matrix[1][1] 0.005506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000854 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 1 NAP NAP . D 3 O77 A 1 502 1 O77 LHN . E 4 EDO A 1 503 1 EDO EDO . F 2 NAP B 1 501 2 NAP NAP . G 4 EDO B 1 502 2 EDO EDO . H 5 HOH A 1 601 142 HOH HOH . H 5 HOH A 2 602 7 HOH HOH . H 5 HOH A 3 603 1 HOH HOH . H 5 HOH A 4 604 62 HOH HOH . H 5 HOH A 5 605 167 HOH HOH . H 5 HOH A 6 606 14 HOH HOH . H 5 HOH A 7 607 130 HOH HOH . H 5 HOH A 8 608 135 HOH HOH . H 5 HOH A 9 609 143 HOH HOH . H 5 HOH A 10 610 166 HOH HOH . H 5 HOH A 11 611 183 HOH HOH . H 5 HOH A 12 612 106 HOH HOH . H 5 HOH A 13 613 107 HOH HOH . H 5 HOH A 14 614 200 HOH HOH . H 5 HOH A 15 615 64 HOH HOH . H 5 HOH A 16 616 29 HOH HOH . H 5 HOH A 17 617 133 HOH HOH . H 5 HOH A 18 618 181 HOH HOH . H 5 HOH A 19 619 91 HOH HOH . H 5 HOH A 20 620 97 HOH HOH . H 5 HOH A 21 621 102 HOH HOH . H 5 HOH A 22 622 158 HOH HOH . H 5 HOH A 23 623 150 HOH HOH . H 5 HOH A 24 624 33 HOH HOH . H 5 HOH A 25 625 58 HOH HOH . H 5 HOH A 26 626 11 HOH HOH . H 5 HOH A 27 627 83 HOH HOH . H 5 HOH A 28 628 13 HOH HOH . H 5 HOH A 29 629 118 HOH HOH . H 5 HOH A 30 630 132 HOH HOH . H 5 HOH A 31 631 34 HOH HOH . H 5 HOH A 32 632 203 HOH HOH . H 5 HOH A 33 633 8 HOH HOH . H 5 HOH A 34 634 18 HOH HOH . H 5 HOH A 35 635 160 HOH HOH . H 5 HOH A 36 636 115 HOH HOH . H 5 HOH A 37 637 93 HOH HOH . H 5 HOH A 38 638 123 HOH HOH . H 5 HOH A 39 639 63 HOH HOH . H 5 HOH A 40 640 66 HOH HOH . H 5 HOH A 41 641 73 HOH HOH . H 5 HOH A 42 642 180 HOH HOH . H 5 HOH A 43 643 131 HOH HOH . H 5 HOH A 44 644 202 HOH HOH . H 5 HOH A 45 645 54 HOH HOH . H 5 HOH A 46 646 90 HOH HOH . H 5 HOH A 47 647 72 HOH HOH . H 5 HOH A 48 648 141 HOH HOH . H 5 HOH A 49 649 111 HOH HOH . H 5 HOH A 50 650 146 HOH HOH . H 5 HOH A 51 651 129 HOH HOH . H 5 HOH A 52 652 138 HOH HOH . H 5 HOH A 53 653 88 HOH HOH . H 5 HOH A 54 654 3 HOH HOH . H 5 HOH A 55 655 48 HOH HOH . H 5 HOH A 56 656 190 HOH HOH . H 5 HOH A 57 657 43 HOH HOH . H 5 HOH A 58 658 4 HOH HOH . H 5 HOH A 59 659 46 HOH HOH . H 5 HOH A 60 660 149 HOH HOH . H 5 HOH A 61 661 40 HOH HOH . H 5 HOH A 62 662 47 HOH HOH . H 5 HOH A 63 663 27 HOH HOH . H 5 HOH A 64 664 22 HOH HOH . H 5 HOH A 65 665 15 HOH HOH . H 5 HOH A 66 666 168 HOH HOH . H 5 HOH A 67 667 38 HOH HOH . H 5 HOH A 68 668 52 HOH HOH . H 5 HOH A 69 669 156 HOH HOH . H 5 HOH A 70 670 108 HOH HOH . H 5 HOH A 71 671 92 HOH HOH . H 5 HOH A 72 672 17 HOH HOH . H 5 HOH A 73 673 109 HOH HOH . H 5 HOH A 74 674 51 HOH HOH . H 5 HOH A 75 675 136 HOH HOH . H 5 HOH A 76 676 2 HOH HOH . H 5 HOH A 77 677 174 HOH HOH . H 5 HOH A 78 678 117 HOH HOH . H 5 HOH A 79 679 78 HOH HOH . H 5 HOH A 80 680 192 HOH HOH . H 5 HOH A 81 681 186 HOH HOH . H 5 HOH A 82 682 162 HOH HOH . H 5 HOH A 83 683 153 HOH HOH . H 5 HOH A 84 684 94 HOH HOH . H 5 HOH A 85 685 201 HOH HOH . H 5 HOH A 86 686 164 HOH HOH . H 5 HOH A 87 687 57 HOH HOH . H 5 HOH A 88 688 210 HOH HOH . H 5 HOH A 89 689 140 HOH HOH . H 5 HOH A 90 690 28 HOH HOH . H 5 HOH A 91 691 191 HOH HOH . H 5 HOH A 92 692 81 HOH HOH . H 5 HOH A 93 693 179 HOH HOH . H 5 HOH A 94 694 120 HOH HOH . H 5 HOH A 95 695 37 HOH HOH . H 5 HOH A 96 696 194 HOH HOH . H 5 HOH A 97 697 36 HOH HOH . H 5 HOH A 98 698 122 HOH HOH . H 5 HOH A 99 699 175 HOH HOH . H 5 HOH A 100 700 85 HOH HOH . H 5 HOH A 101 701 116 HOH HOH . H 5 HOH A 102 702 161 HOH HOH . H 5 HOH A 103 703 176 HOH HOH . H 5 HOH A 104 704 188 HOH HOH . H 5 HOH A 105 705 157 HOH HOH . H 5 HOH A 106 706 209 HOH HOH . H 5 HOH A 107 707 195 HOH HOH . H 5 HOH A 108 708 121 HOH HOH . H 5 HOH A 109 709 119 HOH HOH . H 5 HOH A 110 710 89 HOH HOH . H 5 HOH A 111 711 67 HOH HOH . H 5 HOH A 112 712 205 HOH HOH . H 5 HOH A 113 713 77 HOH HOH . I 5 HOH B 1 601 193 HOH HOH . I 5 HOH B 2 602 45 HOH HOH . I 5 HOH B 3 603 128 HOH HOH . I 5 HOH B 4 604 82 HOH HOH . I 5 HOH B 5 605 79 HOH HOH . I 5 HOH B 6 606 137 HOH HOH . I 5 HOH B 7 607 147 HOH HOH . I 5 HOH B 8 608 169 HOH HOH . I 5 HOH B 9 609 126 HOH HOH . I 5 HOH B 10 610 125 HOH HOH . I 5 HOH B 11 611 110 HOH HOH . I 5 HOH B 12 612 145 HOH HOH . I 5 HOH B 13 613 155 HOH HOH . I 5 HOH B 14 614 50 HOH HOH . I 5 HOH B 15 615 30 HOH HOH . I 5 HOH B 16 616 19 HOH HOH . I 5 HOH B 17 617 98 HOH HOH . I 5 HOH B 18 618 42 HOH HOH . I 5 HOH B 19 619 104 HOH HOH . I 5 HOH B 20 620 76 HOH HOH . I 5 HOH B 21 621 21 HOH HOH . I 5 HOH B 22 622 10 HOH HOH . I 5 HOH B 23 623 148 HOH HOH . I 5 HOH B 24 624 68 HOH HOH . I 5 HOH B 25 625 197 HOH HOH . I 5 HOH B 26 626 6 HOH HOH . I 5 HOH B 27 627 114 HOH HOH . I 5 HOH B 28 628 87 HOH HOH . I 5 HOH B 29 629 71 HOH HOH . I 5 HOH B 30 630 159 HOH HOH . I 5 HOH B 31 631 70 HOH HOH . I 5 HOH B 32 632 173 HOH HOH . I 5 HOH B 33 633 35 HOH HOH . I 5 HOH B 34 634 184 HOH HOH . I 5 HOH B 35 635 9 HOH HOH . I 5 HOH B 36 636 95 HOH HOH . I 5 HOH B 37 637 170 HOH HOH . I 5 HOH B 38 638 31 HOH HOH . I 5 HOH B 39 639 65 HOH HOH . I 5 HOH B 40 640 12 HOH HOH . I 5 HOH B 41 641 182 HOH HOH . I 5 HOH B 42 642 60 HOH HOH . I 5 HOH B 43 643 59 HOH HOH . I 5 HOH B 44 644 134 HOH HOH . I 5 HOH B 45 645 127 HOH HOH . I 5 HOH B 46 646 103 HOH HOH . I 5 HOH B 47 647 154 HOH HOH . I 5 HOH B 48 648 84 HOH HOH . I 5 HOH B 49 649 101 HOH HOH . I 5 HOH B 50 650 139 HOH HOH . I 5 HOH B 51 651 151 HOH HOH . I 5 HOH B 52 652 100 HOH HOH . I 5 HOH B 53 653 32 HOH HOH . I 5 HOH B 54 654 41 HOH HOH . I 5 HOH B 55 655 56 HOH HOH . I 5 HOH B 56 656 53 HOH HOH . I 5 HOH B 57 657 39 HOH HOH . I 5 HOH B 58 658 69 HOH HOH . I 5 HOH B 59 659 16 HOH HOH . I 5 HOH B 60 660 112 HOH HOH . I 5 HOH B 61 661 99 HOH HOH . I 5 HOH B 62 662 20 HOH HOH . I 5 HOH B 63 663 5 HOH HOH . I 5 HOH B 64 664 96 HOH HOH . I 5 HOH B 65 665 26 HOH HOH . I 5 HOH B 66 666 86 HOH HOH . I 5 HOH B 67 667 24 HOH HOH . I 5 HOH B 68 668 74 HOH HOH . I 5 HOH B 69 669 163 HOH HOH . I 5 HOH B 70 670 55 HOH HOH . I 5 HOH B 71 671 49 HOH HOH . I 5 HOH B 72 672 165 HOH HOH . I 5 HOH B 73 673 105 HOH HOH . I 5 HOH B 74 674 177 HOH HOH . I 5 HOH B 75 675 152 HOH HOH . I 5 HOH B 76 676 172 HOH HOH . I 5 HOH B 77 677 178 HOH HOH . I 5 HOH B 78 678 199 HOH HOH . I 5 HOH B 79 679 204 HOH HOH . I 5 HOH B 80 680 185 HOH HOH . I 5 HOH B 81 681 189 HOH HOH . I 5 HOH B 82 682 25 HOH HOH . I 5 HOH B 83 683 23 HOH HOH . I 5 HOH B 84 684 144 HOH HOH . I 5 HOH B 85 685 113 HOH HOH . I 5 HOH B 86 686 44 HOH HOH . I 5 HOH B 87 687 124 HOH HOH . I 5 HOH B 88 688 61 HOH HOH . I 5 HOH B 89 689 171 HOH HOH . I 5 HOH B 90 690 196 HOH HOH . I 5 HOH B 91 691 198 HOH HOH . I 5 HOH B 92 692 208 HOH HOH . I 5 HOH B 93 693 207 HOH HOH . I 5 HOH B 94 694 206 HOH HOH . I 5 HOH B 95 695 187 HOH HOH . I 5 HOH B 96 696 75 HOH HOH . I 5 HOH B 97 697 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 57.887 19.555 -14.213 1 47.39 ? C1 EDO 502 B 1 HETATM 2 O O1 EDO . . . G 4 59.243 19.105 -14.079 1 29.62 ? O1 EDO 502 B 1 HETATM 3 C C2 EDO . . . G 4 57.599 20.905 -14.881 1 30.95 ? C2 EDO 502 B 1 HETATM 4 O O2 EDO . . . G 4 56.217 21.22 -15.013 1 32.36 ? O2 EDO 502 B 1 HETATM 5 H H11 EDO . . . G 4 57.34 18.79 -14.768 1 56.9 ? H11 EDO 502 B 1 HETATM 6 H H12 EDO . . . G 4 57.448 19.582 -13.214 1 56.9 ? H12 EDO 502 B 1 HETATM 7 H HO1 EDO . . . G 4 59.255 18.244 -13.638 1 35.58 ? HO1 EDO 502 B 1 HETATM 8 H H21 EDO . . . G 4 58.083 21.693 -14.3 1 37.18 ? H21 EDO 502 B 1 HETATM 9 H H22 EDO . . . G 4 58.055 20.909 -15.873 1 37.18 ? H22 EDO 502 B 1 HETATM 10 H HO2 EDO . . . G 4 56.111 21.954 -15.634 1 38.87 ? HO2 EDO 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #