data_6PC2 # _model_server_result.job_id gkSLiH5mfd4MFePL2iL-kQ _model_server_result.datetime_utc '2024-12-01 12:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6PC2 # _exptl.entry_id 6PC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.53 _cell.angle_gamma 90 _cell.entry_id 6PC2 _cell.length_a 113.016 _cell.length_b 94.475 _cell.length_c 107.197 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 H N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 379 A VAL 368 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C MG MG . A MG 501 1_555 D O4 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc3 C MG MG . A MG 501 1_555 M O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 F MG MG . A MG 504 1_555 G O2B GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 F MG MG . A MG 504 1_555 G O1A GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc6 F MG MG . A MG 504 1_555 G O1G GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc7 B O VAL 379 B VAL 368 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 H MG MG . B MG 501 1_555 I O1G GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc9 H MG MG . B MG 501 1_555 I O1A GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc10 H MG MG . B MG 501 1_555 I O2B GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 H MG MG . B MG 501 1_555 N O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc12 J MG MG . B MG 503 1_555 K O4 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc13 J MG MG . B MG 503 1_555 N O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc14 J MG MG . B MG 503 1_555 N O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PC2 _atom_sites.fract_transf_matrix[1][1] 0.008848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002965 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 502 MG MG . D 3 PO4 A 1 502 701 PO4 PO4 . E 3 PO4 A 1 503 702 PO4 PO4 . F 2 MG A 1 504 501 MG MG . G 4 GNP A 1 505 601 GNP GNP . H 2 MG B 1 501 501 MG MG . I 4 GNP B 1 502 601 GNP GNP . J 2 MG B 1 503 502 MG MG . K 3 PO4 B 1 504 701 PO4 PO4 . L 3 PO4 B 1 505 702 PO4 PO4 . M 5 HOH A 1 601 802 HOH HOH . M 5 HOH A 2 602 2 HOH HOH . M 5 HOH A 3 603 801 HOH HOH . M 5 HOH A 4 604 1 HOH HOH . M 5 HOH A 5 605 4 HOH HOH . M 5 HOH A 6 606 6 HOH HOH . N 5 HOH B 1 601 5 HOH HOH . N 5 HOH B 2 602 7 HOH HOH . N 5 HOH B 3 603 3 HOH HOH . N 5 HOH B 4 604 801 HOH HOH . N 5 HOH B 5 605 8 HOH HOH . N 5 HOH B 6 606 10 HOH HOH . N 5 HOH B 7 607 802 HOH HOH . N 5 HOH B 8 608 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.177 _atom_site.Cartn_y 5.442 _atom_site.Cartn_z 45.093 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #