data_6PC2 # _model_server_result.job_id 4UBMmVPE5l2J2WhQ5oceNA _model_server_result.datetime_utc '2024-12-01 12:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 6PC2 # _exptl.entry_id 6PC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.53 _cell.angle_gamma 90 _cell.entry_id 6PC2 _cell.length_a 113.016 _cell.length_b 94.475 _cell.length_c 107.197 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 379 A VAL 368 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 C MG MG . A MG 501 1_555 D O4 PO4 . A PO4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc3 C MG MG . A MG 501 1_555 M O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 F MG MG . A MG 504 1_555 G O2B GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 F MG MG . A MG 504 1_555 G O1A GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc6 F MG MG . A MG 504 1_555 G O1G GNP . A GNP 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc7 B O VAL 379 B VAL 368 1_555 H MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 H MG MG . B MG 501 1_555 I O1G GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc9 H MG MG . B MG 501 1_555 I O1A GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc10 H MG MG . B MG 501 1_555 I O2B GNP . B GNP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 H MG MG . B MG 501 1_555 N O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc12 J MG MG . B MG 503 1_555 K O4 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc13 J MG MG . B MG 503 1_555 N O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc14 J MG MG . B MG 503 1_555 N O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6PC2 _atom_sites.fract_transf_matrix[1][1] 0.008848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002965 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 502 MG MG . D 3 PO4 A 1 502 701 PO4 PO4 . E 3 PO4 A 1 503 702 PO4 PO4 . F 2 MG A 1 504 501 MG MG . G 4 GNP A 1 505 601 GNP GNP . H 2 MG B 1 501 501 MG MG . I 4 GNP B 1 502 601 GNP GNP . J 2 MG B 1 503 502 MG MG . K 3 PO4 B 1 504 701 PO4 PO4 . L 3 PO4 B 1 505 702 PO4 PO4 . M 5 HOH A 1 601 802 HOH HOH . M 5 HOH A 2 602 2 HOH HOH . M 5 HOH A 3 603 801 HOH HOH . M 5 HOH A 4 604 1 HOH HOH . M 5 HOH A 5 605 4 HOH HOH . M 5 HOH A 6 606 6 HOH HOH . N 5 HOH B 1 601 5 HOH HOH . N 5 HOH B 2 602 7 HOH HOH . N 5 HOH B 3 603 3 HOH HOH . N 5 HOH B 4 604 801 HOH HOH . N 5 HOH B 5 605 8 HOH HOH . N 5 HOH B 6 606 10 HOH HOH . N 5 HOH B 7 607 802 HOH HOH . N 5 HOH B 8 608 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . I 4 2.535 12.554 31.601 1 86.64 ? PG GNP 502 B 1 HETATM 2 O O1G GNP . . . I 4 2.692 10.997 31.967 1 75.55 ? O1G GNP 502 B 1 HETATM 3 O O2G GNP . . . I 4 1.562 12.936 32.804 1 74.75 ? O2G GNP 502 B 1 HETATM 4 O O3G GNP . . . I 4 2.076 12.714 30.23 1 80.68 ? O3G GNP 502 B 1 HETATM 5 N N3B GNP . . . I 4 3.956 13.278 31.609 1 86.4 ? N3B GNP 502 B 1 HETATM 6 P PB GNP . . . I 4 4.927 13.017 32.816 1 94.8 ? PB GNP 502 B 1 HETATM 7 O O1B GNP . . . I 4 5.556 14.367 33.444 1 83.02 ? O1B GNP 502 B 1 HETATM 8 O O2B GNP . . . I 4 4.773 12.184 33.999 1 97.82 ? O2B GNP 502 B 1 HETATM 9 O O3A GNP . . . I 4 6.444 12.547 32.611 1 77.79 ? O3A GNP 502 B 1 HETATM 10 P PA GNP . . . I 4 6.619 11.067 31.988 1 69.51 ? PA GNP 502 B 1 HETATM 11 O O1A GNP . . . I 4 6.254 10.098 33.221 1 77.05 ? O1A GNP 502 B 1 HETATM 12 O O2A GNP . . . I 4 6.314 10.577 30.652 1 74.76 ? O2A GNP 502 B 1 HETATM 13 O O5' GNP . . . I 4 8.215 10.747 32.097 1 80.12 ? O5' GNP 502 B 1 HETATM 14 C C5' GNP . . . I 4 8.664 11.387 33.285 1 72.18 ? C5' GNP 502 B 1 HETATM 15 C C4' GNP . . . I 4 10 10.883 33.767 1 82.4 ? C4' GNP 502 B 1 HETATM 16 O O4' GNP . . . I 4 9.924 9.465 33.947 1 77.12 ? O4' GNP 502 B 1 HETATM 17 C C3' GNP . . . I 4 11.083 11.177 32.69 1 92.37 ? C3' GNP 502 B 1 HETATM 18 O O3' GNP . . . I 4 12 12.101 33.238 1 91.14 ? O3' GNP 502 B 1 HETATM 19 C C2' GNP . . . I 4 11.75 9.817 32.391 1 76.23 ? C2' GNP 502 B 1 HETATM 20 O O2' GNP . . . I 4 13.143 9.844 32.603 1 95.78 ? O2' GNP 502 B 1 HETATM 21 C C1' GNP . . . I 4 11.153 8.86 33.482 1 68.44 ? C1' GNP 502 B 1 HETATM 22 N N9 GNP . . . I 4 10.812 7.543 33.07 1 69.31 ? N9 GNP 502 B 1 HETATM 23 C C8 GNP . . . I 4 10.355 7.144 31.724 1 70.44 ? C8 GNP 502 B 1 HETATM 24 N N7 GNP . . . I 4 10.092 5.699 31.803 1 63.23 ? N7 GNP 502 B 1 HETATM 25 C C5 GNP . . . I 4 10.37 5.279 33.114 1 60.81 ? C5 GNP 502 B 1 HETATM 26 C C6 GNP . . . I 4 10.313 4.056 33.786 1 60.96 ? C6 GNP 502 B 1 HETATM 27 O O6 GNP . . . I 4 9.9 2.944 33.08 1 68.8 ? O6 GNP 502 B 1 HETATM 28 N N1 GNP . . . I 4 10.649 3.942 35.106 1 71.28 ? N1 GNP 502 B 1 HETATM 29 C C2 GNP . . . I 4 11.061 5.084 35.766 1 73.82 ? C2 GNP 502 B 1 HETATM 30 N N2 GNP . . . I 4 11.41 4.963 37.106 1 66.87 ? N2 GNP 502 B 1 HETATM 31 N N3 GNP . . . I 4 11.161 6.367 35.208 1 70.34 ? N3 GNP 502 B 1 HETATM 32 C C4 GNP . . . I 4 10.816 6.425 33.911 1 68.72 ? C4 GNP 502 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #