data_6PC9 # _model_server_result.job_id Q6RERPWXOv1bbF0DrZZVlQ _model_server_result.datetime_utc '2025-01-25 15:37:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6PC9 # _exptl.entry_id 6PC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.41 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-4-{4-[2-(4-methyl-3-oxopiperazin-1-yl)-2-oxoethyl]phenoxy}benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PC9 _cell.length_a 60.534 _cell.length_b 76.711 _cell.length_c 86.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C21 H21 N3 O3' _chem_comp.formula_weight 363.41 _chem_comp.id O7P _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-4-{4-[2-(4-methyl-3-oxopiperazin-1-yl)-2-oxoethyl]phenoxy}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 O7P sing 237 n n C02 C03 O7P doub 238 n y C02 C27 O7P sing 239 n y C03 C04 O7P sing 240 n n C03 C06 O7P sing 241 n y C04 N05 O7P trip 242 n n C06 C07 O7P doub 243 n y C07 C08 O7P sing 244 n y C08 C27 O7P doub 245 n y C08 O09 O7P sing 246 n n C10 C11 O7P doub 247 n y C10 C26 O7P sing 248 n y C10 O09 O7P sing 249 n n C11 C12 O7P sing 250 n y C12 C13 O7P doub 251 n y C13 C14 O7P sing 252 n n C13 C25 O7P sing 253 n y C15 N16 O7P sing 254 n n C15 O24 O7P doub 255 n n C17 C18 O7P sing 256 n n C17 N16 O7P sing 257 n n C18 N19 O7P sing 258 n n C18 O23 O7P doub 259 n n C20 N19 O7P sing 260 n n C21 C22 O7P sing 261 n n C21 N19 O7P sing 262 n n C22 N16 O7P sing 263 n n C25 C26 O7P doub 264 n y C14 C15 O7P sing 265 n n C01 H1 O7P sing 266 n n C01 H2 O7P sing 267 n n C01 H3 O7P sing 268 n n C06 H4 O7P sing 269 n n C07 H5 O7P sing 270 n n C11 H6 O7P sing 271 n n C12 H7 O7P sing 272 n n C14 H8 O7P sing 273 n n C14 H9 O7P sing 274 n n C17 H10 O7P sing 275 n n C17 H11 O7P sing 276 n n C20 H12 O7P sing 277 n n C20 H13 O7P sing 278 n n C20 H14 O7P sing 279 n n C21 H15 O7P sing 280 n n C21 H16 O7P sing 281 n n C22 H17 O7P sing 282 n n C22 H18 O7P sing 283 n n C25 H19 O7P sing 284 n n C26 H20 O7P sing 285 n n C27 H21 O7P sing 286 n n # _atom_sites.entry_id 6PC9 _atom_sites.fract_transf_matrix[1][1] 0.01652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O7P A 1 201 201 O7P 689 . D 3 PGE B 1 201 201 PGE PGE . E 4 HOH A 1 301 81 HOH HOH . E 4 HOH A 2 302 50 HOH HOH . E 4 HOH A 3 303 13 HOH HOH . E 4 HOH A 4 304 86 HOH HOH . E 4 HOH A 5 305 69 HOH HOH . E 4 HOH A 6 306 73 HOH HOH . E 4 HOH A 7 307 18 HOH HOH . E 4 HOH A 8 308 62 HOH HOH . E 4 HOH A 9 309 1 HOH HOH . E 4 HOH A 10 310 3 HOH HOH . E 4 HOH A 11 311 53 HOH HOH . E 4 HOH A 12 312 17 HOH HOH . E 4 HOH A 13 313 29 HOH HOH . E 4 HOH A 14 314 7 HOH HOH . E 4 HOH A 15 315 2 HOH HOH . E 4 HOH A 16 316 12 HOH HOH . E 4 HOH A 17 317 49 HOH HOH . E 4 HOH A 18 318 40 HOH HOH . E 4 HOH A 19 319 4 HOH HOH . E 4 HOH A 20 320 67 HOH HOH . E 4 HOH A 21 321 15 HOH HOH . E 4 HOH A 22 322 42 HOH HOH . E 4 HOH A 23 323 63 HOH HOH . E 4 HOH A 24 324 82 HOH HOH . E 4 HOH A 25 325 43 HOH HOH . E 4 HOH A 26 326 57 HOH HOH . E 4 HOH A 27 327 16 HOH HOH . E 4 HOH A 28 328 89 HOH HOH . E 4 HOH A 29 329 11 HOH HOH . E 4 HOH A 30 330 19 HOH HOH . E 4 HOH A 31 331 80 HOH HOH . E 4 HOH A 32 332 37 HOH HOH . E 4 HOH A 33 333 60 HOH HOH . E 4 HOH A 34 334 21 HOH HOH . E 4 HOH A 35 335 68 HOH HOH . E 4 HOH A 36 336 44 HOH HOH . E 4 HOH A 37 337 48 HOH HOH . E 4 HOH A 38 338 55 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 27 HOH HOH . E 4 HOH A 41 341 5 HOH HOH . E 4 HOH A 42 342 9 HOH HOH . E 4 HOH A 43 343 22 HOH HOH . E 4 HOH A 44 344 58 HOH HOH . E 4 HOH A 45 345 59 HOH HOH . E 4 HOH A 46 346 23 HOH HOH . E 4 HOH A 47 347 88 HOH HOH . E 4 HOH A 48 348 87 HOH HOH . E 4 HOH A 49 349 33 HOH HOH . E 4 HOH A 50 350 56 HOH HOH . E 4 HOH A 51 351 46 HOH HOH . F 4 HOH B 1 301 10 HOH HOH . F 4 HOH B 2 302 85 HOH HOH . F 4 HOH B 3 303 24 HOH HOH . F 4 HOH B 4 304 14 HOH HOH . F 4 HOH B 5 305 77 HOH HOH . F 4 HOH B 6 306 8 HOH HOH . F 4 HOH B 7 307 76 HOH HOH . F 4 HOH B 8 308 20 HOH HOH . F 4 HOH B 9 309 25 HOH HOH . F 4 HOH B 10 310 78 HOH HOH . F 4 HOH B 11 311 31 HOH HOH . F 4 HOH B 12 312 26 HOH HOH . F 4 HOH B 13 313 45 HOH HOH . F 4 HOH B 14 314 61 HOH HOH . F 4 HOH B 15 315 52 HOH HOH . F 4 HOH B 16 316 34 HOH HOH . F 4 HOH B 17 317 47 HOH HOH . F 4 HOH B 18 318 51 HOH HOH . F 4 HOH B 19 319 35 HOH HOH . F 4 HOH B 20 320 83 HOH HOH . F 4 HOH B 21 321 6 HOH HOH . F 4 HOH B 22 322 30 HOH HOH . F 4 HOH B 23 323 38 HOH HOH . F 4 HOH B 24 324 32 HOH HOH . F 4 HOH B 25 325 41 HOH HOH . F 4 HOH B 26 326 36 HOH HOH . F 4 HOH B 27 327 64 HOH HOH . F 4 HOH B 28 328 70 HOH HOH . F 4 HOH B 29 329 74 HOH HOH . F 4 HOH B 30 330 28 HOH HOH . F 4 HOH B 31 331 71 HOH HOH . F 4 HOH B 32 332 66 HOH HOH . F 4 HOH B 33 333 65 HOH HOH . F 4 HOH B 34 334 75 HOH HOH . F 4 HOH B 35 335 79 HOH HOH . F 4 HOH B 36 336 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 O7P . A . C 2 10.647 5.985 10.473 0.68 41.47 ? C01 O7P 201 A 1 HETATM 2 C C01 O7P . B . C 2 10.696 6.254 10.442 0.32 41.51 ? C01 O7P 201 A 1 HETATM 3 C C02 O7P . A . C 2 9.86 6.97 11.297 0.68 41.93 ? C02 O7P 201 A 1 HETATM 4 C C02 O7P . B . C 2 9.895 7.172 11.332 0.32 41.72 ? C02 O7P 201 A 1 HETATM 5 C C03 O7P . A . C 2 10.503 7.963 12.051 0.68 40.74 ? C03 O7P 201 A 1 HETATM 6 C C03 O7P . B . C 2 10.52 8.152 12.114 0.32 40.89 ? C03 O7P 201 A 1 HETATM 7 C C04 O7P . A . C 2 11.938 8.05 12.028 0.68 44.54 ? C04 O7P 201 A 1 HETATM 8 C C04 O7P . B . C 2 11.948 8.32 12.052 0.32 44.47 ? C04 O7P 201 A 1 HETATM 9 C C06 O7P . A . C 2 9.759 8.859 12.82 0.68 41.28 ? C06 O7P 201 A 1 HETATM 10 C C06 O7P . B . C 2 9.765 8.978 12.947 0.32 41.26 ? C06 O7P 201 A 1 HETATM 11 C C07 O7P . A . C 2 8.38 8.781 12.845 0.68 40.07 ? C07 O7P 201 A 1 HETATM 12 C C07 O7P . B . C 2 8.391 8.843 13.006 0.32 40.03 ? C07 O7P 201 A 1 HETATM 13 C C08 O7P . A . C 2 7.741 7.806 12.101 0.68 42.02 ? C08 O7P 201 A 1 HETATM 14 C C08 O7P . B . C 2 7.767 7.885 12.229 0.32 41.5 ? C08 O7P 201 A 1 HETATM 15 C C10 O7P . A . C 2 5.523 8.685 12.523 0.68 39.33 ? C10 O7P 201 A 1 HETATM 16 C C10 O7P . B . C 2 5.558 8.803 12.575 0.32 39.81 ? C10 O7P 201 A 1 HETATM 17 C C11 O7P . A . C 2 5.562 9.923 11.907 0.68 40.89 ? C11 O7P 201 A 1 HETATM 18 C C11 O7P . B . C 2 5.636 9.986 11.863 0.32 41.21 ? C11 O7P 201 A 1 HETATM 19 C C12 O7P . A . C 2 4.652 10.897 12.271 0.68 36.42 ? C12 O7P 201 A 1 HETATM 20 C C12 O7P . B . C 2 4.802 11.039 12.191 0.32 36.89 ? C12 O7P 201 A 1 HETATM 21 C C13 O7P . A . C 2 3.702 10.659 13.25 0.68 39.8 ? C13 O7P 201 A 1 HETATM 22 C C13 O7P . B . C 2 3.882 10.931 13.221 0.32 39.84 ? C13 O7P 201 A 1 HETATM 23 C C14 O7P . A . C 2 2.732 11.74 13.666 0.68 43.31 ? C14 O7P 201 A 1 HETATM 24 C C14 O7P . B . C 2 2.983 12.092 13.58 0.32 41.98 ? C14 O7P 201 A 1 HETATM 25 C C15 O7P . A . C 2 2.899 12.07 15.136 0.68 41.68 ? C15 O7P 201 A 1 HETATM 26 C C15 O7P . B . C 2 2.956 12.374 15.07 0.32 41.31 ? C15 O7P 201 A 1 HETATM 27 C C17 O7P . A . C 2 0.613 12.939 15.035 0.68 38.83 ? C17 O7P 201 A 1 HETATM 28 C C17 O7P . B . C 2 1.637 13.305 16.939 0.32 40.2 ? C17 O7P 201 A 1 HETATM 29 C C18 O7P . A . C 2 -0.59 13.147 15.914 0.68 44.41 ? C18 O7P 201 A 1 HETATM 30 C C18 O7P . B . C 2 0.186 13.351 17.343 0.32 42.62 ? C18 O7P 201 A 1 HETATM 31 C C20 O7P . A . C 2 -1.49 13.598 18.117 0.68 45.38 ? C20 O7P 201 A 1 HETATM 32 C C20 O7P . B . C 2 -2.146 13.499 16.709 0.32 42.91 ? C20 O7P 201 A 1 HETATM 33 C C21 O7P . A . C 2 0.836 12.843 17.921 0.68 43.51 ? C21 O7P 201 A 1 HETATM 34 C C21 O7P . B . C 2 -0.473 13.074 14.964 0.32 41.08 ? C21 O7P 201 A 1 HETATM 35 C C22 O7P . A . C 2 2.003 13.286 17.077 0.68 39.23 ? C22 O7P 201 A 1 HETATM 36 C C22 O7P . B . C 2 0.886 13.628 14.616 0.32 40.17 ? C22 O7P 201 A 1 HETATM 37 C C25 O7P . A . C 2 3.688 9.415 13.866 0.68 40.11 ? C25 O7P 201 A 1 HETATM 38 C C25 O7P . B . C 2 3.815 9.734 13.92 0.32 40.33 ? C25 O7P 201 A 1 HETATM 39 C C26 O7P . A . C 2 4.593 8.432 13.514 0.68 39.81 ? C26 O7P 201 A 1 HETATM 40 C C26 O7P . B . C 2 4.646 8.674 13.606 0.32 40.01 ? C26 O7P 201 A 1 HETATM 41 C C27 O7P . A . C 2 8.471 6.91 11.335 0.68 39.64 ? C27 O7P 201 A 1 HETATM 42 C C27 O7P . B . C 2 8.51 7.055 11.402 0.32 39.9 ? C27 O7P 201 A 1 HETATM 43 N N05 O7P . A . C 2 13.079 8.088 11.984 0.68 45.96 ? N05 O7P 201 A 1 HETATM 44 N N05 O7P . B . C 2 13.083 8.427 11.976 0.32 45.06 ? N05 O7P 201 A 1 HETATM 45 N N16 O7P . A . C 2 1.884 12.731 15.725 0.68 42.62 ? N16 O7P 201 A 1 HETATM 46 N N16 O7P . B . C 2 1.892 13.067 15.52 0.32 42.09 ? N16 O7P 201 A 1 HETATM 47 N N19 O7P . A . C 2 -0.408 13.185 17.237 0.68 44.5 ? N19 O7P 201 A 1 HETATM 48 N N19 O7P . B . C 2 -0.74 13.305 16.382 0.32 44 ? N19 O7P 201 A 1 HETATM 49 O O09 O7P . A . C 2 6.356 7.657 12.096 0.68 41.96 ? O09 O7P 201 A 1 HETATM 50 O O09 O7P . B . C 2 6.381 7.726 12.253 0.32 41.66 ? O09 O7P 201 A 1 HETATM 51 O O23 O7P . A . C 2 -1.683 13.288 15.386 0.68 47.94 ? O23 O7P 201 A 1 HETATM 52 O O23 O7P . B . C 2 -0.087 13.434 18.53 0.32 41.7 ? O23 O7P 201 A 1 HETATM 53 O O24 O7P . A . C 2 3.903 11.742 15.749 0.68 40.43 ? O24 O7P 201 A 1 HETATM 54 O O24 O7P . B . C 2 3.846 11.991 15.815 0.32 40.64 ? O24 O7P 201 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 54 #