data_6PCI # _model_server_result.job_id w1k_sv3iYSY0uXT5uVnNSg _model_server_result.datetime_utc '2024-11-04 20:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":402}' # _entry.id 6PCI # _exptl.entry_id 6PCI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PCI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 V N N ? 8 W N N ? 8 X N N ? 8 Y N N ? 8 Z N N ? 8 AA N N ? 8 BA N N ? 8 CA N N ? 8 DA N N ? 8 EA N N ? 8 FA N N ? 8 GA N N # _pdbx_entity_branch.entity_id 7 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 7 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n S NAG 1 G 1 NAG D 1563 NAG 7 n S NAG 2 G 2 NAG D 1564 NAG 7 n S BMA 3 G 3 BMA D 1565 BMA 7 n S MAN 4 G 4 MAN D 1567 MAN 7 n S MAN 5 G 5 MAN D 1566 MAN 7 n T NAG 1 T 1 NAG E 1563 NAG 7 n T NAG 2 T 2 NAG E 1564 NAG 7 n T BMA 3 T 3 BMA E 1565 BMA 7 n T MAN 4 T 4 MAN E 1567 MAN 7 n T MAN 5 T 5 MAN E 1566 MAN 7 n U NAG 1 U 1 NAG F 1563 NAG 7 n U NAG 2 U 2 NAG F 1564 NAG 7 n U BMA 3 U 3 BMA F 1565 BMA 7 n U MAN 4 U 4 MAN F 1567 MAN 7 n U MAN 5 U 5 MAN F 1566 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 77 A CYS 108 1_555 A SG CYS 104 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 90 A CYS 121 1_555 A SG CYS 116 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 23 K CYS 23 1_555 C SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 D SG CYS 51 D CYS 511 1_555 D SG CYS 96 D CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 E SG CYS 23 Q CYS 23 1_555 E SG CYS 89 Q CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 F SG CYS 22 N CYS 22 1_555 F SG CYS 95 N CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 G SG CYS 77 B CYS 108 1_555 G SG CYS 104 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 G SG CYS 90 B CYS 121 1_555 G SG CYS 116 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 H SG CYS 22 I CYS 22 1_555 H SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 I SG CYS 23 L CYS 23 1_555 I SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 J SG CYS 51 E CYS 511 1_555 J SG CYS 96 E CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 K SG CYS 23 R CYS 23 1_555 K SG CYS 89 R CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf14 L SG CYS 22 O CYS 22 1_555 L SG CYS 95 O CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 M SG CYS 77 C CYS 108 1_555 M SG CYS 104 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 M SG CYS 90 C CYS 121 1_555 M SG CYS 116 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 N SG CYS 22 J CYS 22 1_555 N SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 O SG CYS 23 M CYS 23 1_555 O SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf19 P SG CYS 51 F CYS 511 1_555 P SG CYS 96 F CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf20 Q SG CYS 23 S CYS 23 1_555 Q SG CYS 89 S CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf21 R SG CYS 22 P CYS 22 1_555 R SG CYS 95 P CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 197 A ASN 228 1_555 X C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 207 A ASN 238 1_555 W C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 226 A ASN 257 1_555 V C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 237 A ASN 268 1_555 Y C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 D ND2 ASN 103 D ASN 563 1_555 S C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 G ND2 ASN 197 B ASN 228 1_555 BA C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 G ND2 ASN 207 B ASN 238 1_555 AA C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 G ND2 ASN 226 B ASN 257 1_555 Z C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 G ND2 ASN 237 B ASN 268 1_555 CA C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 J ND2 ASN 103 E ASN 563 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 M ND2 ASN 197 C ASN 228 1_555 FA C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 M ND2 ASN 207 C ASN 238 1_555 EA C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale13 M ND2 ASN 226 C ASN 257 1_555 DA C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 M ND2 ASN 237 C ASN 268 1_555 GA C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale15 P ND2 ASN 103 F ASN 563 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 S O4 NAG . G NAG 1 1_555 S C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 S O4 NAG . G NAG 2 1_555 S C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 S O3 BMA . G BMA 3 1_555 S C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale19 S O6 BMA . G BMA 3 1_555 S C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale21 T O4 NAG . T NAG 2 1_555 T C1 BMA . T BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale22 T O3 BMA . T BMA 3 1_555 T C1 MAN . T MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale23 T O6 BMA . T BMA 3 1_555 T C1 MAN . T MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale24 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale25 U O4 NAG . U NAG 2 1_555 U C1 BMA . U BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale26 U O3 BMA . U BMA 3 1_555 U C1 MAN . U MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale27 U O6 BMA . U BMA 3 1_555 U C1 MAN . U MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6PCI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 8 NAG A 1 401 1257 NAG NAG . W 8 NAG A 1 402 1238 NAG NAG . X 8 NAG A 1 403 1228 NAG NAG . Y 8 NAG A 1 404 1268 NAG NAG . Z 8 NAG B 1 401 1257 NAG NAG . AA 8 NAG B 1 402 1238 NAG NAG . BA 8 NAG B 1 403 1228 NAG NAG . CA 8 NAG B 1 404 1268 NAG NAG . DA 8 NAG C 1 401 1257 NAG NAG . EA 8 NAG C 1 402 1238 NAG NAG . FA 8 NAG C 1 403 1228 NAG NAG . GA 8 NAG C 1 404 1268 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . W 8 173.906 160.575 129.395 1 116.45 ? C1 NAG 402 A 1 HETATM 2 C C2 NAG . . . W 8 172.912 160.09 128.335 1 116.45 ? C2 NAG 402 A 1 HETATM 3 C C3 NAG . . . W 8 172.547 161.229 127.39 1 116.45 ? C3 NAG 402 A 1 HETATM 4 C C4 NAG . . . W 8 172.032 162.424 128.18 1 116.45 ? C4 NAG 402 A 1 HETATM 5 C C5 NAG . . . W 8 173.066 162.841 129.223 1 116.45 ? C5 NAG 402 A 1 HETATM 6 C C6 NAG . . . W 8 172.589 163.954 130.125 1 116.45 ? C6 NAG 402 A 1 HETATM 7 C C7 NAG . . . W 8 172.717 157.865 127.316 1 116.45 ? C7 NAG 402 A 1 HETATM 8 C C8 NAG . . . W 8 173.424 156.785 126.551 1 116.45 ? C8 NAG 402 A 1 HETATM 9 N N2 NAG . . . W 8 173.44 158.954 127.597 1 116.45 ? N2 NAG 402 A 1 HETATM 10 O O3 NAG . . . W 8 171.539 160.781 126.493 1 116.45 ? O3 NAG 402 A 1 HETATM 11 O O4 NAG . . . W 8 171.784 163.513 127.302 1 116.45 ? O4 NAG 402 A 1 HETATM 12 O O5 NAG . . . W 8 173.367 161.726 130.076 1 116.45 ? O5 NAG 402 A 1 HETATM 13 O O6 NAG . . . W 8 171.207 164.222 129.93 1 116.45 ? O6 NAG 402 A 1 HETATM 14 O O7 NAG . . . W 8 171.545 157.757 127.66 1 116.45 ? O7 NAG 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 586 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #