data_6PD8 # _model_server_result.job_id 5_xmIOHQa2CXXVEw8UhMTQ _model_server_result.datetime_utc '2024-11-26 05:45:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 6PD8 # _exptl.entry_id 6PD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.381 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-ethoxy-2-fluoro-3-methyl-N'-(phenylsulfonyl)benzohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PD8 _cell.length_a 46.067 _cell.length_b 56.656 _cell.length_c 123.041 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C16 H17 F N2 O4 S' _chem_comp.formula_weight 352.381 _chem_comp.id O9D _chem_comp.mon_nstd_flag . _chem_comp.name "5-ethoxy-2-fluoro-3-methyl-N'-(phenylsulfonyl)benzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 O9D doub 278 n y C22 C23 O9D sing 279 n y C21 C20 O9D sing 280 n y C23 C24 O9D doub 281 n y C20 C19 O9D doub 282 n y C24 C19 O9D sing 283 n y C19 S16 O9D sing 284 n n C07 C06 O9D sing 285 n n F09 C08 O9D sing 286 n n O18 S16 O9D doub 287 n n S16 O17 O9D doub 288 n n S16 N15 O9D sing 289 n n C06 C08 O9D doub 290 n y C06 C05 O9D sing 291 n y C08 C10 O9D sing 292 n y N14 N15 O9D sing 293 n n N14 C12 O9D sing 294 n n C05 C04 O9D doub 295 n y C10 C12 O9D sing 296 n n C10 C11 O9D doub 297 n y C12 O13 O9D doub 298 n n C04 C11 O9D sing 299 n y C04 O03 O9D sing 300 n n C02 O03 O9D sing 301 n n C02 C01 O9D sing 302 n n C20 H1 O9D sing 303 n n C21 H2 O9D sing 304 n n C22 H3 O9D sing 305 n n C24 H4 O9D sing 306 n n C01 H5 O9D sing 307 n n C01 H6 O9D sing 308 n n C01 H7 O9D sing 309 n n C02 H8 O9D sing 310 n n C02 H9 O9D sing 311 n n C05 H10 O9D sing 312 n n C07 H11 O9D sing 313 n n C07 H12 O9D sing 314 n n C07 H13 O9D sing 315 n n C11 H14 O9D sing 316 n n C23 H15 O9D sing 317 n n N14 H16 O9D sing 318 n n N15 H17 O9D sing 319 n n # _atom_sites.entry_id 6PD8 _atom_sites.fract_transf_matrix[1][1] 0.021708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 4 GOL A 1 803 510 GOL GOL . E 4 GOL A 1 804 511 GOL GOL . F 5 O9D A 1 805 506 O9D LIG . G 6 HOH A 1 901 39 HOH HOH . G 6 HOH A 2 902 1 HOH HOH . G 6 HOH A 3 903 14 HOH HOH . G 6 HOH A 4 904 32 HOH HOH . G 6 HOH A 5 905 7 HOH HOH . G 6 HOH A 6 906 41 HOH HOH . G 6 HOH A 7 907 18 HOH HOH . G 6 HOH A 8 908 42 HOH HOH . G 6 HOH A 9 909 8 HOH HOH . G 6 HOH A 10 910 12 HOH HOH . G 6 HOH A 11 911 15 HOH HOH . G 6 HOH A 12 912 29 HOH HOH . G 6 HOH A 13 913 35 HOH HOH . G 6 HOH A 14 914 2 HOH HOH . G 6 HOH A 15 915 21 HOH HOH . G 6 HOH A 16 916 33 HOH HOH . G 6 HOH A 17 917 4 HOH HOH . G 6 HOH A 18 918 16 HOH HOH . G 6 HOH A 19 919 10 HOH HOH . G 6 HOH A 20 920 19 HOH HOH . G 6 HOH A 21 921 6 HOH HOH . G 6 HOH A 22 922 13 HOH HOH . G 6 HOH A 23 923 20 HOH HOH . G 6 HOH A 24 924 43 HOH HOH . G 6 HOH A 25 925 37 HOH HOH . G 6 HOH A 26 926 40 HOH HOH . G 6 HOH A 27 927 44 HOH HOH . G 6 HOH A 28 928 22 HOH HOH . G 6 HOH A 29 929 28 HOH HOH . G 6 HOH A 30 930 38 HOH HOH . G 6 HOH A 31 931 27 HOH HOH . G 6 HOH A 32 932 25 HOH HOH . G 6 HOH A 33 933 30 HOH HOH . G 6 HOH A 34 934 26 HOH HOH . G 6 HOH A 35 935 31 HOH HOH . G 6 HOH A 36 936 23 HOH HOH . G 6 HOH A 37 937 34 HOH HOH . G 6 HOH A 38 938 45 HOH HOH . G 6 HOH A 39 939 17 HOH HOH . G 6 HOH A 40 940 36 HOH HOH . G 6 HOH A 41 941 24 HOH HOH . G 6 HOH A 42 942 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 O9D . . . F 5 6.151 -12.016 -18.176 1 49.46 ? C10 O9D 805 A 1 HETATM 2 C C20 O9D . . . F 5 3.037 -9.532 -22.097 1 49.46 ? C20 O9D 805 A 1 HETATM 3 C C21 O9D . . . F 5 2.386 -9.759 -23.293 1 49.46 ? C21 O9D 805 A 1 HETATM 4 C C22 O9D . . . F 5 1.327 -8.966 -23.691 1 49.46 ? C22 O9D 805 A 1 HETATM 5 C C24 O9D . . . F 5 1.56 -7.683 -21.666 1 52.6 ? C24 O9D 805 A 1 HETATM 6 C C01 O9D . . . F 5 8.57 -16.339 -14.793 1 49.46 ? C01 O9D 805 A 1 HETATM 7 C C02 O9D . . . F 5 8.431 -15.796 -16.116 1 49.46 ? C02 O9D 805 A 1 HETATM 8 C C04 O9D . . . F 5 7.566 -13.785 -17.254 1 49.46 ? C04 O9D 805 A 1 HETATM 9 C C05 O9D . . . F 5 7.828 -14.248 -18.544 1 49.46 ? C05 O9D 805 A 1 HETATM 10 C C06 O9D . . . F 5 7.253 -13.604 -19.659 1 49.46 ? C06 O9D 805 A 1 HETATM 11 C C07 O9D . . . F 5 7.528 -14.097 -21.026 1 49.46 ? C07 O9D 805 A 1 HETATM 12 C C08 O9D . . . F 5 6.408 -12.483 -19.465 1 49.46 ? C08 O9D 805 A 1 HETATM 13 C C11 O9D . . . F 5 6.714 -12.65 -17.081 1 51.34 ? C11 O9D 805 A 1 HETATM 14 C C12 O9D . . . F 5 5.245 -10.807 -17.933 1 49.46 ? C12 O9D 805 A 1 HETATM 15 C C19 O9D . . . F 5 2.612 -8.478 -21.282 1 53.32 ? C19 O9D 805 A 1 HETATM 16 C C23 O9D . . . F 5 0.921 -7.929 -22.872 1 49.46 ? C23 O9D 805 A 1 HETATM 17 F F09 O9D . . . F 5 5.85 -11.849 -20.556 1 49.46 ? F09 O9D 805 A 1 HETATM 18 N N14 O9D . . . F 5 4.131 -10.553 -18.822 1 49.46 ? N14 O9D 805 A 1 HETATM 19 N N15 O9D . . . F 5 3.256 -9.486 -18.69 1 49.46 ? N15 O9D 805 A 1 HETATM 20 O O03 O9D . . . F 5 8.143 -14.418 -16.031 1 49.5 ? O03 O9D 805 A 1 HETATM 21 O O13 O9D . . . F 5 5.457 -10.115 -17.047 1 49.46 ? O13 O9D 805 A 1 HETATM 22 O O17 O9D . . . F 5 2.904 -6.93 -19.058 1 49.46 ? O17 O9D 805 A 1 HETATM 23 O O18 O9D . . . F 5 4.791 -7.811 -19.849 1 52.53 ? O18 O9D 805 A 1 HETATM 24 S S16 O9D . . . F 5 3.436 -8.153 -19.693 1 49.46 ? S16 O9D 805 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #