data_6PD9 # _model_server_result.job_id y0US0qem0sSgtXLsStrfEQ _model_server_result.datetime_utc '2024-11-29 10:29:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 6PD9 # _exptl.entry_id 6PD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.389 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(1H-pyrazol-1-yl)benzohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PD9 _cell.length_a 46.15 _cell.length_b 57.706 _cell.length_c 121.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc5 C NA NA . A NA 802 1_555 G O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? # _chem_comp.formula 'C17 H15 F N4 O3 S' _chem_comp.formula_weight 374.389 _chem_comp.id O9G _chem_comp.mon_nstd_flag . _chem_comp.name "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(1H-pyrazol-1-yl)benzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 O9G doub 278 n y C24 C25 O9G sing 279 n y C23 C22 O9G sing 280 n y C25 C26 O9G doub 281 n y C22 C21 O9G doub 282 n y C26 C21 O9G sing 283 n y C01 C02 O9G sing 284 n n C21 S18 O9G sing 285 n n F04 C03 O9G sing 286 n n O19 S18 O9G doub 287 n n C02 C03 O9G doub 288 n y C02 C08 O9G sing 289 n y C03 C05 O9G sing 290 n y S18 O20 O9G doub 291 n n S18 N17 O9G sing 292 n n C08 C07 O9G doub 293 n y N16 N17 O9G sing 294 n n N16 C14 O9G sing 295 n n C05 C14 O9G sing 296 n n C05 C06 O9G doub 297 n y C14 O15 O9G doub 298 n n C07 C06 O9G sing 299 n y C07 N09 O9G sing 300 n n C10 N09 O9G sing 301 n y C10 C11 O9G doub 302 n y N09 N13 O9G sing 303 n y C11 C12 O9G sing 304 n y N13 C12 O9G doub 305 n y C10 H1 O9G sing 306 n n C22 H2 O9G sing 307 n n C24 H3 O9G sing 308 n n C26 H4 O9G sing 309 n n C01 H5 O9G sing 310 n n C01 H6 O9G sing 311 n n C01 H7 O9G sing 312 n n C06 H8 O9G sing 313 n n C08 H9 O9G sing 314 n n C11 H10 O9G sing 315 n n C12 H11 O9G sing 316 n n C23 H12 O9G sing 317 n n C25 H13 O9G sing 318 n n N16 H14 O9G sing 319 n n N17 H15 O9G sing 320 n n # _atom_sites.entry_id 6PD9 _atom_sites.fract_transf_matrix[1][1] 0.021668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 4 GOL A 1 803 510 GOL GOL . E 4 GOL A 1 804 511 GOL GOL . F 5 O9G A 1 805 506 O9G LIG . G 6 HOH A 1 901 1 HOH HOH . G 6 HOH A 2 902 7 HOH HOH . G 6 HOH A 3 903 11 HOH HOH . G 6 HOH A 4 904 5 HOH HOH . G 6 HOH A 5 905 13 HOH HOH . G 6 HOH A 6 906 8 HOH HOH . G 6 HOH A 7 907 15 HOH HOH . G 6 HOH A 8 908 17 HOH HOH . G 6 HOH A 9 909 18 HOH HOH . G 6 HOH A 10 910 9 HOH HOH . G 6 HOH A 11 911 6 HOH HOH . G 6 HOH A 12 912 2 HOH HOH . G 6 HOH A 13 913 14 HOH HOH . G 6 HOH A 14 914 10 HOH HOH . G 6 HOH A 15 915 16 HOH HOH . G 6 HOH A 16 916 19 HOH HOH . G 6 HOH A 17 917 3 HOH HOH . G 6 HOH A 18 918 4 HOH HOH . G 6 HOH A 19 919 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 O9G . . . F 5 8.245 -16.289 -16.582 1 47.06 ? C10 O9G 805 A 1 HETATM 2 C C21 O9G . . . F 5 2.648 -8.712 -21.108 1 57.2 ? C21 O9G 805 A 1 HETATM 3 C C22 O9G . . . F 5 2.901 -9.776 -21.96 1 56.03 ? C22 O9G 805 A 1 HETATM 4 C C24 O9G . . . F 5 1.128 -9.036 -23.394 1 62.15 ? C24 O9G 805 A 1 HETATM 5 C C26 O9G . . . F 5 1.633 -7.815 -21.396 1 57.94 ? C26 O9G 805 A 1 HETATM 6 C C01 O9G . . . F 5 7.365 -14.417 -21.331 1 47.06 ? C01 O9G 805 A 1 HETATM 7 C C02 O9G . . . F 5 7.127 -13.942 -19.914 1 47.06 ? C02 O9G 805 A 1 HETATM 8 C C03 O9G . . . F 5 6.397 -12.79 -19.678 1 49.16 ? C03 O9G 805 A 1 HETATM 9 C C05 O9G . . . F 5 6.184 -12.359 -18.38 1 52.28 ? C05 O9G 805 A 1 HETATM 10 C C06 O9G . . . F 5 6.696 -13.081 -17.315 1 53.33 ? C06 O9G 805 A 1 HETATM 11 C C07 O9G . . . F 5 7.428 -14.234 -17.553 1 47.81 ? C07 O9G 805 A 1 HETATM 12 C C08 O9G . . . F 5 7.639 -14.664 -18.853 1 47.06 ? C08 O9G 805 A 1 HETATM 13 C C11 O9G . . . F 5 8.733 -16.691 -15.369 1 47.06 ? C11 O9G 805 A 1 HETATM 14 C C12 O9G . . . F 5 8.73 -15.586 -14.534 1 47.06 ? C12 O9G 805 A 1 HETATM 15 C C14 O9G . . . F 5 5.384 -11.097 -18.149 1 47.06 ? C14 O9G 805 A 1 HETATM 16 C C23 O9G . . . F 5 2.139 -9.937 -23.105 1 56 ? C23 O9G 805 A 1 HETATM 17 C C25 O9G . . . F 5 0.871 -7.977 -22.541 1 50.08 ? C25 O9G 805 A 1 HETATM 18 F F04 O9G . . . F 5 5.9 -12.084 -20.701 1 54.47 ? F04 O9G 805 A 1 HETATM 19 N N09 O9G . . . F 5 7.959 -14.995 -16.489 1 48.26 ? N09 O9G 805 A 1 HETATM 20 N N13 O9G . . . F 5 8.243 -14.538 -15.246 1 49.99 ? N13 O9G 805 A 1 HETATM 21 N N16 O9G . . . F 5 4.149 -10.935 -18.831 1 56.27 ? N16 O9G 805 A 1 HETATM 22 N N17 O9G . . . F 5 3.382 -9.802 -18.662 1 54.77 ? N17 O9G 805 A 1 HETATM 23 O O15 O9G . . . F 5 5.792 -10.239 -17.394 1 47.06 ? O15 O9G 805 A 1 HETATM 24 O O19 O9G . . . F 5 5.012 -8.326 -19.963 1 51.07 ? O19 O9G 805 A 1 HETATM 25 O O20 O9G . . . F 5 3.337 -7.277 -18.964 1 53.72 ? O20 O9G 805 A 1 HETATM 26 S S18 O9G . . . F 5 3.624 -8.513 -19.645 1 51.97 ? S18 O9G 805 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #