data_6PDA
#
_model_server_result.job_id            GxwSNPyXU38dhXTzgw59cg 
_model_server_result.datetime_utc      '2024-11-20 11:34:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    6PDA 
#
_exptl.entry_id    6PDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PDA 
_cell.length_a            45.925 
_cell.length_b            56.214 
_cell.length_c            122.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 C NA NA . A NA 802 1_555 H O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc6 C NA NA . A NA 802 1_555 H O HOH . A HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6PDA 
_atom_sites.fract_transf_matrix[1][1]    0.021775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 506 ZN ZN . 
C 3 NA A 1 802 507 NA NA . 
D 4 GOL A 1 803 510 GOL GOL . 
E 4 GOL A 1 804 511 GOL GOL . 
F 5 SO4 A 1 805 512 SO4 SO4 . 
G 6 O9J A 1 806 506 O9J LIG . 
H 7 HOH A 1 901 22 HOH HOH . 
H 7 HOH A 2 902 86 HOH HOH . 
H 7 HOH A 3 903 26 HOH HOH . 
H 7 HOH A 4 904 60 HOH HOH . 
H 7 HOH A 5 905 36 HOH HOH . 
H 7 HOH A 6 906 7 HOH HOH . 
H 7 HOH A 7 907 11 HOH HOH . 
H 7 HOH A 8 908 1 HOH HOH . 
H 7 HOH A 9 909 3 HOH HOH . 
H 7 HOH A 10 910 79 HOH HOH . 
H 7 HOH A 11 911 25 HOH HOH . 
H 7 HOH A 12 912 24 HOH HOH . 
H 7 HOH A 13 913 69 HOH HOH . 
H 7 HOH A 14 914 78 HOH HOH . 
H 7 HOH A 15 915 6 HOH HOH . 
H 7 HOH A 16 916 4 HOH HOH . 
H 7 HOH A 17 917 23 HOH HOH . 
H 7 HOH A 18 918 17 HOH HOH . 
H 7 HOH A 19 919 45 HOH HOH . 
H 7 HOH A 20 920 74 HOH HOH . 
H 7 HOH A 21 921 35 HOH HOH . 
H 7 HOH A 22 922 9 HOH HOH . 
H 7 HOH A 23 923 83 HOH HOH . 
H 7 HOH A 24 924 56 HOH HOH . 
H 7 HOH A 25 925 30 HOH HOH . 
H 7 HOH A 26 926 14 HOH HOH . 
H 7 HOH A 27 927 20 HOH HOH . 
H 7 HOH A 28 928 44 HOH HOH . 
H 7 HOH A 29 929 59 HOH HOH . 
H 7 HOH A 30 930 28 HOH HOH . 
H 7 HOH A 31 931 2 HOH HOH . 
H 7 HOH A 32 932 68 HOH HOH . 
H 7 HOH A 33 933 5 HOH HOH . 
H 7 HOH A 34 934 18 HOH HOH . 
H 7 HOH A 35 935 55 HOH HOH . 
H 7 HOH A 36 936 12 HOH HOH . 
H 7 HOH A 37 937 37 HOH HOH . 
H 7 HOH A 38 938 19 HOH HOH . 
H 7 HOH A 39 939 8 HOH HOH . 
H 7 HOH A 40 940 70 HOH HOH . 
H 7 HOH A 41 941 16 HOH HOH . 
H 7 HOH A 42 942 76 HOH HOH . 
H 7 HOH A 43 943 80 HOH HOH . 
H 7 HOH A 44 944 77 HOH HOH . 
H 7 HOH A 45 945 27 HOH HOH . 
H 7 HOH A 46 946 71 HOH HOH . 
H 7 HOH A 47 947 48 HOH HOH . 
H 7 HOH A 48 948 47 HOH HOH . 
H 7 HOH A 49 949 61 HOH HOH . 
H 7 HOH A 50 950 31 HOH HOH . 
H 7 HOH A 51 951 75 HOH HOH . 
H 7 HOH A 52 952 81 HOH HOH . 
H 7 HOH A 53 953 72 HOH HOH . 
H 7 HOH A 54 954 38 HOH HOH . 
H 7 HOH A 55 955 53 HOH HOH . 
H 7 HOH A 56 956 10 HOH HOH . 
H 7 HOH A 57 957 21 HOH HOH . 
H 7 HOH A 58 958 66 HOH HOH . 
H 7 HOH A 59 959 41 HOH HOH . 
H 7 HOH A 60 960 67 HOH HOH . 
H 7 HOH A 61 961 33 HOH HOH . 
H 7 HOH A 62 962 32 HOH HOH . 
H 7 HOH A 63 963 40 HOH HOH . 
H 7 HOH A 64 964 82 HOH HOH . 
H 7 HOH A 65 965 65 HOH HOH . 
H 7 HOH A 66 966 13 HOH HOH . 
H 7 HOH A 67 967 63 HOH HOH . 
H 7 HOH A 68 968 52 HOH HOH . 
H 7 HOH A 69 969 62 HOH HOH . 
H 7 HOH A 70 970 29 HOH HOH . 
H 7 HOH A 71 971 57 HOH HOH . 
H 7 HOH A 72 972 34 HOH HOH . 
H 7 HOH A 73 973 85 HOH HOH . 
H 7 HOH A 74 974 58 HOH HOH . 
H 7 HOH A 75 975 43 HOH HOH . 
H 7 HOH A 76 976 39 HOH HOH . 
H 7 HOH A 77 977 64 HOH HOH . 
H 7 HOH A 78 978 49 HOH HOH . 
H 7 HOH A 79 979 15 HOH HOH . 
H 7 HOH A 80 980 42 HOH HOH . 
H 7 HOH A 81 981 73 HOH HOH . 
H 7 HOH A 82 982 46 HOH HOH . 
H 7 HOH A 83 983 54 HOH HOH . 
H 7 HOH A 84 984 84 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               7.386 
_atom_site.Cartn_y               -12.151 
_atom_site.Cartn_z               -3.32 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           802 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#