data_6PDB # _model_server_result.job_id XSlYLq_1VMQwtGI1kcVeOg _model_server_result.datetime_utc '2024-11-14 20:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 6PDB # _exptl.entry_id 6PDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.4 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(pyrimidin-2-yl)benzohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PDB _cell.length_a 46.115 _cell.length_b 56.766 _cell.length_c 121.896 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc5 C NA NA . A NA 802 1_555 H O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc6 C NA NA . A NA 802 1_555 H O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc7 C NA NA . A NA 802 1_555 H O HOH . A HOH 953 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? # _chem_comp.formula 'C18 H15 F N4 O3 S' _chem_comp.formula_weight 386.4 _chem_comp.id O9M _chem_comp.mon_nstd_flag . _chem_comp.name "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(pyrimidin-2-yl)benzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 O9M doub 278 n y C25 C26 O9M sing 279 n y C24 C23 O9M sing 280 n y C26 C27 O9M doub 281 n y C23 C22 O9M doub 282 n y C27 C22 O9M sing 283 n y C01 C02 O9M sing 284 n n C22 S19 O9M sing 285 n n F04 C03 O9M sing 286 n n C02 C03 O9M doub 287 n y C02 C08 O9M sing 288 n y O21 S19 O9M doub 289 n n C03 C05 O9M sing 290 n y S19 O20 O9M doub 291 n n S19 N18 O9M sing 292 n n C08 C07 O9M doub 293 n y N17 N18 O9M sing 294 n n N17 C15 O9M sing 295 n n C05 C15 O9M sing 296 n n C05 C06 O9M doub 297 n y C15 O16 O9M doub 298 n n C07 C06 O9M sing 299 n y C07 C09 O9M sing 300 n n N14 C09 O9M doub 301 n y N14 C13 O9M sing 302 n y C09 N10 O9M sing 303 n y C13 C12 O9M doub 304 n y N10 C11 O9M doub 305 n y C12 C11 O9M sing 306 n y C13 H1 O9M sing 307 n n C24 H2 O9M sing 308 n n C26 H3 O9M sing 309 n n C01 H4 O9M sing 310 n n C01 H5 O9M sing 311 n n C01 H6 O9M sing 312 n n C06 H7 O9M sing 313 n n C08 H8 O9M sing 314 n n C11 H9 O9M sing 315 n n C12 H10 O9M sing 316 n n C23 H11 O9M sing 317 n n C25 H12 O9M sing 318 n n C27 H13 O9M sing 319 n n N17 H14 O9M sing 320 n n N18 H15 O9M sing 321 n n # _atom_sites.entry_id 6PDB _atom_sites.fract_transf_matrix[1][1] 0.021685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 4 GOL A 1 803 510 GOL GOL . E 4 GOL A 1 804 511 GOL GOL . F 5 SO4 A 1 805 512 SO4 SO4 . G 6 O9M A 1 806 506 O9M LIG . H 7 HOH A 1 901 90 HOH HOH . H 7 HOH A 2 902 48 HOH HOH . H 7 HOH A 3 903 1 HOH HOH . H 7 HOH A 4 904 108 HOH HOH . H 7 HOH A 5 905 59 HOH HOH . H 7 HOH A 6 906 47 HOH HOH . H 7 HOH A 7 907 103 HOH HOH . H 7 HOH A 8 908 70 HOH HOH . H 7 HOH A 9 909 6 HOH HOH . H 7 HOH A 10 910 115 HOH HOH . H 7 HOH A 11 911 31 HOH HOH . H 7 HOH A 12 912 8 HOH HOH . H 7 HOH A 13 913 12 HOH HOH . H 7 HOH A 14 914 18 HOH HOH . H 7 HOH A 15 915 5 HOH HOH . H 7 HOH A 16 916 4 HOH HOH . H 7 HOH A 17 917 15 HOH HOH . H 7 HOH A 18 918 27 HOH HOH . H 7 HOH A 19 919 21 HOH HOH . H 7 HOH A 20 920 13 HOH HOH . H 7 HOH A 21 921 2 HOH HOH . H 7 HOH A 22 922 46 HOH HOH . H 7 HOH A 23 923 100 HOH HOH . H 7 HOH A 24 924 67 HOH HOH . H 7 HOH A 25 925 26 HOH HOH . H 7 HOH A 26 926 82 HOH HOH . H 7 HOH A 27 927 16 HOH HOH . H 7 HOH A 28 928 34 HOH HOH . H 7 HOH A 29 929 17 HOH HOH . H 7 HOH A 30 930 74 HOH HOH . H 7 HOH A 31 931 14 HOH HOH . H 7 HOH A 32 932 28 HOH HOH . H 7 HOH A 33 933 9 HOH HOH . H 7 HOH A 34 934 10 HOH HOH . H 7 HOH A 35 935 80 HOH HOH . H 7 HOH A 36 936 69 HOH HOH . H 7 HOH A 37 937 91 HOH HOH . H 7 HOH A 38 938 96 HOH HOH . H 7 HOH A 39 939 60 HOH HOH . H 7 HOH A 40 940 3 HOH HOH . H 7 HOH A 41 941 11 HOH HOH . H 7 HOH A 42 942 33 HOH HOH . H 7 HOH A 43 943 107 HOH HOH . H 7 HOH A 44 944 102 HOH HOH . H 7 HOH A 45 945 29 HOH HOH . H 7 HOH A 46 946 20 HOH HOH . H 7 HOH A 47 947 25 HOH HOH . H 7 HOH A 48 948 105 HOH HOH . H 7 HOH A 49 949 49 HOH HOH . H 7 HOH A 50 950 97 HOH HOH . H 7 HOH A 51 951 55 HOH HOH . H 7 HOH A 52 952 39 HOH HOH . H 7 HOH A 53 953 109 HOH HOH . H 7 HOH A 54 954 83 HOH HOH . H 7 HOH A 55 955 62 HOH HOH . H 7 HOH A 56 956 63 HOH HOH . H 7 HOH A 57 957 42 HOH HOH . H 7 HOH A 58 958 51 HOH HOH . H 7 HOH A 59 959 77 HOH HOH . H 7 HOH A 60 960 99 HOH HOH . H 7 HOH A 61 961 76 HOH HOH . H 7 HOH A 62 962 66 HOH HOH . H 7 HOH A 63 963 73 HOH HOH . H 7 HOH A 64 964 78 HOH HOH . H 7 HOH A 65 965 111 HOH HOH . H 7 HOH A 66 966 54 HOH HOH . H 7 HOH A 67 967 92 HOH HOH . H 7 HOH A 68 968 94 HOH HOH . H 7 HOH A 69 969 53 HOH HOH . H 7 HOH A 70 970 98 HOH HOH . H 7 HOH A 71 971 93 HOH HOH . H 7 HOH A 72 972 95 HOH HOH . H 7 HOH A 73 973 24 HOH HOH . H 7 HOH A 74 974 86 HOH HOH . H 7 HOH A 75 975 71 HOH HOH . H 7 HOH A 76 976 68 HOH HOH . H 7 HOH A 77 977 84 HOH HOH . H 7 HOH A 78 978 52 HOH HOH . H 7 HOH A 79 979 72 HOH HOH . H 7 HOH A 80 980 75 HOH HOH . H 7 HOH A 81 981 58 HOH HOH . H 7 HOH A 82 982 112 HOH HOH . H 7 HOH A 83 983 101 HOH HOH . H 7 HOH A 84 984 32 HOH HOH . H 7 HOH A 85 985 30 HOH HOH . H 7 HOH A 86 986 43 HOH HOH . H 7 HOH A 87 987 106 HOH HOH . H 7 HOH A 88 988 64 HOH HOH . H 7 HOH A 89 989 65 HOH HOH . H 7 HOH A 90 990 61 HOH HOH . H 7 HOH A 91 991 57 HOH HOH . H 7 HOH A 92 992 85 HOH HOH . H 7 HOH A 93 993 88 HOH HOH . H 7 HOH A 94 994 44 HOH HOH . H 7 HOH A 95 995 19 HOH HOH . H 7 HOH A 96 996 41 HOH HOH . H 7 HOH A 97 997 113 HOH HOH . H 7 HOH A 98 998 110 HOH HOH . H 7 HOH A 99 999 89 HOH HOH . H 7 HOH A 100 1000 36 HOH HOH . H 7 HOH A 101 1001 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 O9M . . . G 6 8.461 -17 -15.73 1 38.6 ? C13 O9M 806 A 1 HETATM 2 C C15 O9M . . . G 6 5.424 -10.851 -17.912 1 41.72 ? C15 O9M 806 A 1 HETATM 3 C C22 O9M . . . G 6 2.756 -8.573 -21.074 1 48.98 ? C22 O9M 806 A 1 HETATM 4 C C24 O9M . . . G 6 2.636 -9.702 -23.192 1 46.57 ? C24 O9M 806 A 1 HETATM 5 C C26 O9M . . . G 6 0.936 -8.114 -22.58 1 49.17 ? C26 O9M 806 A 1 HETATM 6 C C01 O9M . . . G 6 7.288 -13.933 -21.371 1 39.15 ? C01 O9M 806 A 1 HETATM 7 C C02 O9M . . . G 6 7.101 -13.575 -19.911 1 41.48 ? C02 O9M 806 A 1 HETATM 8 C C03 O9M . . . G 6 6.391 -12.439 -19.568 1 40.67 ? C03 O9M 806 A 1 HETATM 9 C C05 O9M . . . G 6 6.214 -12.091 -18.237 1 41.43 ? C05 O9M 806 A 1 HETATM 10 C C06 O9M . . . G 6 6.737 -12.882 -17.235 1 41.01 ? C06 O9M 806 A 1 HETATM 11 C C07 O9M . . . G 6 7.449 -14.015 -17.583 1 41.7 ? C07 O9M 806 A 1 HETATM 12 C C08 O9M . . . G 6 7.633 -14.371 -18.913 1 37.45 ? C08 O9M 806 A 1 HETATM 13 C C09 O9M . . . G 6 8.016 -14.882 -16.489 1 40.21 ? C09 O9M 806 A 1 HETATM 14 C C11 O9M . . . G 6 9.023 -15.033 -14.421 1 38.57 ? C11 O9M 806 A 1 HETATM 15 C C12 O9M . . . G 6 9.004 -16.433 -14.564 1 41.64 ? C12 O9M 806 A 1 HETATM 16 C C23 O9M . . . G 6 3.284 -9.481 -21.983 1 42.01 ? C23 O9M 806 A 1 HETATM 17 C C25 O9M . . . G 6 1.464 -9.018 -23.487 1 48.59 ? C25 O9M 806 A 1 HETATM 18 C C27 O9M . . . G 6 1.583 -7.891 -21.374 1 50.36 ? C27 O9M 806 A 1 HETATM 19 F F04 O9M . . . G 6 5.88 -11.654 -20.521 1 41.37 ? F04 O9M 806 A 1 HETATM 20 N N10 O9M . . . G 6 8.511 -14.298 -15.416 1 38.4 ? N10 O9M 806 A 1 HETATM 21 N N14 O9M . . . G 6 7.977 -16.187 -16.675 1 42.1 ? N14 O9M 806 A 1 HETATM 22 N N17 O9M . . . G 6 4.248 -10.62 -18.679 1 48.01 ? N17 O9M 806 A 1 HETATM 23 N N18 O9M . . . G 6 3.433 -9.524 -18.482 1 46.97 ? N18 O9M 806 A 1 HETATM 24 O O16 O9M . . . G 6 5.773 -10.096 -17.03 1 36.52 ? O16 O9M 806 A 1 HETATM 25 O O20 O9M . . . G 6 3.13 -7.048 -18.923 1 41.74 ? O20 O9M 806 A 1 HETATM 26 O O21 O9M . . . G 6 4.96 -7.952 -19.742 1 44.34 ? O21 O9M 806 A 1 HETATM 27 S S19 O9M . . . G 6 3.578 -8.268 -19.526 1 43.13 ? S19 O9M 806 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #