data_6PDB
#
_model_server_result.job_id            Ugj6PzTMHuAIwdG1cmmmlQ 
_model_server_result.datetime_utc      '2024-11-29 10:31:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":806}' 
#
_entry.id    6PDB 
#
_exptl.entry_id    6PDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.4 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(pyrimidin-2-yl)benzohydrazide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PDB 
_cell.length_a            46.115 
_cell.length_b            56.766 
_cell.length_c            121.896 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc5 C NA NA . A NA 802 1_555 H O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? 
metalc ? metalc6 C NA NA . A NA 802 1_555 H O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc7 C NA NA . A NA 802 1_555 H O HOH . A HOH 953 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
#
_chem_comp.formula           'C18 H15 F N4 O3 S' 
_chem_comp.formula_weight    386.4 
_chem_comp.id                O9M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-(pyrimidin-2-yl)benzohydrazide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 O9M doub 278 n y 
C25 C26 O9M sing 279 n y 
C24 C23 O9M sing 280 n y 
C26 C27 O9M doub 281 n y 
C23 C22 O9M doub 282 n y 
C27 C22 O9M sing 283 n y 
C01 C02 O9M sing 284 n n 
C22 S19 O9M sing 285 n n 
F04 C03 O9M sing 286 n n 
C02 C03 O9M doub 287 n y 
C02 C08 O9M sing 288 n y 
O21 S19 O9M doub 289 n n 
C03 C05 O9M sing 290 n y 
S19 O20 O9M doub 291 n n 
S19 N18 O9M sing 292 n n 
C08 C07 O9M doub 293 n y 
N17 N18 O9M sing 294 n n 
N17 C15 O9M sing 295 n n 
C05 C15 O9M sing 296 n n 
C05 C06 O9M doub 297 n y 
C15 O16 O9M doub 298 n n 
C07 C06 O9M sing 299 n y 
C07 C09 O9M sing 300 n n 
N14 C09 O9M doub 301 n y 
N14 C13 O9M sing 302 n y 
C09 N10 O9M sing 303 n y 
C13 C12 O9M doub 304 n y 
N10 C11 O9M doub 305 n y 
C12 C11 O9M sing 306 n y 
C13 H1 O9M sing 307 n n 
C24 H2 O9M sing 308 n n 
C26 H3 O9M sing 309 n n 
C01 H4 O9M sing 310 n n 
C01 H5 O9M sing 311 n n 
C01 H6 O9M sing 312 n n 
C06 H7 O9M sing 313 n n 
C08 H8 O9M sing 314 n n 
C11 H9 O9M sing 315 n n 
C12 H10 O9M sing 316 n n 
C23 H11 O9M sing 317 n n 
C25 H12 O9M sing 318 n n 
C27 H13 O9M sing 319 n n 
N17 H14 O9M sing 320 n n 
N18 H15 O9M sing 321 n n 
#
_atom_sites.entry_id                     6PDB 
_atom_sites.fract_transf_matrix[1][1]    0.021685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017616 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008204 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 506 ZN ZN . 
C 3 NA A 1 802 507 NA NA . 
D 4 GOL A 1 803 510 GOL GOL . 
E 4 GOL A 1 804 511 GOL GOL . 
F 5 SO4 A 1 805 512 SO4 SO4 . 
G 6 O9M A 1 806 506 O9M LIG . 
H 7 HOH A 1 901 90 HOH HOH . 
H 7 HOH A 2 902 48 HOH HOH . 
H 7 HOH A 3 903 1 HOH HOH . 
H 7 HOH A 4 904 108 HOH HOH . 
H 7 HOH A 5 905 59 HOH HOH . 
H 7 HOH A 6 906 47 HOH HOH . 
H 7 HOH A 7 907 103 HOH HOH . 
H 7 HOH A 8 908 70 HOH HOH . 
H 7 HOH A 9 909 6 HOH HOH . 
H 7 HOH A 10 910 115 HOH HOH . 
H 7 HOH A 11 911 31 HOH HOH . 
H 7 HOH A 12 912 8 HOH HOH . 
H 7 HOH A 13 913 12 HOH HOH . 
H 7 HOH A 14 914 18 HOH HOH . 
H 7 HOH A 15 915 5 HOH HOH . 
H 7 HOH A 16 916 4 HOH HOH . 
H 7 HOH A 17 917 15 HOH HOH . 
H 7 HOH A 18 918 27 HOH HOH . 
H 7 HOH A 19 919 21 HOH HOH . 
H 7 HOH A 20 920 13 HOH HOH . 
H 7 HOH A 21 921 2 HOH HOH . 
H 7 HOH A 22 922 46 HOH HOH . 
H 7 HOH A 23 923 100 HOH HOH . 
H 7 HOH A 24 924 67 HOH HOH . 
H 7 HOH A 25 925 26 HOH HOH . 
H 7 HOH A 26 926 82 HOH HOH . 
H 7 HOH A 27 927 16 HOH HOH . 
H 7 HOH A 28 928 34 HOH HOH . 
H 7 HOH A 29 929 17 HOH HOH . 
H 7 HOH A 30 930 74 HOH HOH . 
H 7 HOH A 31 931 14 HOH HOH . 
H 7 HOH A 32 932 28 HOH HOH . 
H 7 HOH A 33 933 9 HOH HOH . 
H 7 HOH A 34 934 10 HOH HOH . 
H 7 HOH A 35 935 80 HOH HOH . 
H 7 HOH A 36 936 69 HOH HOH . 
H 7 HOH A 37 937 91 HOH HOH . 
H 7 HOH A 38 938 96 HOH HOH . 
H 7 HOH A 39 939 60 HOH HOH . 
H 7 HOH A 40 940 3 HOH HOH . 
H 7 HOH A 41 941 11 HOH HOH . 
H 7 HOH A 42 942 33 HOH HOH . 
H 7 HOH A 43 943 107 HOH HOH . 
H 7 HOH A 44 944 102 HOH HOH . 
H 7 HOH A 45 945 29 HOH HOH . 
H 7 HOH A 46 946 20 HOH HOH . 
H 7 HOH A 47 947 25 HOH HOH . 
H 7 HOH A 48 948 105 HOH HOH . 
H 7 HOH A 49 949 49 HOH HOH . 
H 7 HOH A 50 950 97 HOH HOH . 
H 7 HOH A 51 951 55 HOH HOH . 
H 7 HOH A 52 952 39 HOH HOH . 
H 7 HOH A 53 953 109 HOH HOH . 
H 7 HOH A 54 954 83 HOH HOH . 
H 7 HOH A 55 955 62 HOH HOH . 
H 7 HOH A 56 956 63 HOH HOH . 
H 7 HOH A 57 957 42 HOH HOH . 
H 7 HOH A 58 958 51 HOH HOH . 
H 7 HOH A 59 959 77 HOH HOH . 
H 7 HOH A 60 960 99 HOH HOH . 
H 7 HOH A 61 961 76 HOH HOH . 
H 7 HOH A 62 962 66 HOH HOH . 
H 7 HOH A 63 963 73 HOH HOH . 
H 7 HOH A 64 964 78 HOH HOH . 
H 7 HOH A 65 965 111 HOH HOH . 
H 7 HOH A 66 966 54 HOH HOH . 
H 7 HOH A 67 967 92 HOH HOH . 
H 7 HOH A 68 968 94 HOH HOH . 
H 7 HOH A 69 969 53 HOH HOH . 
H 7 HOH A 70 970 98 HOH HOH . 
H 7 HOH A 71 971 93 HOH HOH . 
H 7 HOH A 72 972 95 HOH HOH . 
H 7 HOH A 73 973 24 HOH HOH . 
H 7 HOH A 74 974 86 HOH HOH . 
H 7 HOH A 75 975 71 HOH HOH . 
H 7 HOH A 76 976 68 HOH HOH . 
H 7 HOH A 77 977 84 HOH HOH . 
H 7 HOH A 78 978 52 HOH HOH . 
H 7 HOH A 79 979 72 HOH HOH . 
H 7 HOH A 80 980 75 HOH HOH . 
H 7 HOH A 81 981 58 HOH HOH . 
H 7 HOH A 82 982 112 HOH HOH . 
H 7 HOH A 83 983 101 HOH HOH . 
H 7 HOH A 84 984 32 HOH HOH . 
H 7 HOH A 85 985 30 HOH HOH . 
H 7 HOH A 86 986 43 HOH HOH . 
H 7 HOH A 87 987 106 HOH HOH . 
H 7 HOH A 88 988 64 HOH HOH . 
H 7 HOH A 89 989 65 HOH HOH . 
H 7 HOH A 90 990 61 HOH HOH . 
H 7 HOH A 91 991 57 HOH HOH . 
H 7 HOH A 92 992 85 HOH HOH . 
H 7 HOH A 93 993 88 HOH HOH . 
H 7 HOH A 94 994 44 HOH HOH . 
H 7 HOH A 95 995 19 HOH HOH . 
H 7 HOH A 96 996 41 HOH HOH . 
H 7 HOH A 97 997 113 HOH HOH . 
H 7 HOH A 98 998 110 HOH HOH . 
H 7 HOH A 99 999 89 HOH HOH . 
H 7 HOH A 100 1000 36 HOH HOH . 
H 7 HOH A 101 1001 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 O9M . . . G 6 8.461 -17 -15.73 1 38.6 ? C13 O9M 806 A 1 
HETATM 2 C C15 O9M . . . G 6 5.424 -10.851 -17.912 1 41.72 ? C15 O9M 806 A 1 
HETATM 3 C C22 O9M . . . G 6 2.756 -8.573 -21.074 1 48.98 ? C22 O9M 806 A 1 
HETATM 4 C C24 O9M . . . G 6 2.636 -9.702 -23.192 1 46.57 ? C24 O9M 806 A 1 
HETATM 5 C C26 O9M . . . G 6 0.936 -8.114 -22.58 1 49.17 ? C26 O9M 806 A 1 
HETATM 6 C C01 O9M . . . G 6 7.288 -13.933 -21.371 1 39.15 ? C01 O9M 806 A 1 
HETATM 7 C C02 O9M . . . G 6 7.101 -13.575 -19.911 1 41.48 ? C02 O9M 806 A 1 
HETATM 8 C C03 O9M . . . G 6 6.391 -12.439 -19.568 1 40.67 ? C03 O9M 806 A 1 
HETATM 9 C C05 O9M . . . G 6 6.214 -12.091 -18.237 1 41.43 ? C05 O9M 806 A 1 
HETATM 10 C C06 O9M . . . G 6 6.737 -12.882 -17.235 1 41.01 ? C06 O9M 806 A 1 
HETATM 11 C C07 O9M . . . G 6 7.449 -14.015 -17.583 1 41.7 ? C07 O9M 806 A 1 
HETATM 12 C C08 O9M . . . G 6 7.633 -14.371 -18.913 1 37.45 ? C08 O9M 806 A 1 
HETATM 13 C C09 O9M . . . G 6 8.016 -14.882 -16.489 1 40.21 ? C09 O9M 806 A 1 
HETATM 14 C C11 O9M . . . G 6 9.023 -15.033 -14.421 1 38.57 ? C11 O9M 806 A 1 
HETATM 15 C C12 O9M . . . G 6 9.004 -16.433 -14.564 1 41.64 ? C12 O9M 806 A 1 
HETATM 16 C C23 O9M . . . G 6 3.284 -9.481 -21.983 1 42.01 ? C23 O9M 806 A 1 
HETATM 17 C C25 O9M . . . G 6 1.464 -9.018 -23.487 1 48.59 ? C25 O9M 806 A 1 
HETATM 18 C C27 O9M . . . G 6 1.583 -7.891 -21.374 1 50.36 ? C27 O9M 806 A 1 
HETATM 19 F F04 O9M . . . G 6 5.88 -11.654 -20.521 1 41.37 ? F04 O9M 806 A 1 
HETATM 20 N N10 O9M . . . G 6 8.511 -14.298 -15.416 1 38.4 ? N10 O9M 806 A 1 
HETATM 21 N N14 O9M . . . G 6 7.977 -16.187 -16.675 1 42.1 ? N14 O9M 806 A 1 
HETATM 22 N N17 O9M . . . G 6 4.248 -10.62 -18.679 1 48.01 ? N17 O9M 806 A 1 
HETATM 23 N N18 O9M . . . G 6 3.433 -9.524 -18.482 1 46.97 ? N18 O9M 806 A 1 
HETATM 24 O O16 O9M . . . G 6 5.773 -10.096 -17.03 1 36.52 ? O16 O9M 806 A 1 
HETATM 25 O O20 O9M . . . G 6 3.13 -7.048 -18.923 1 41.74 ? O20 O9M 806 A 1 
HETATM 26 O O21 O9M . . . G 6 4.96 -7.952 -19.742 1 44.34 ? O21 O9M 806 A 1 
HETATM 27 S S19 O9M . . . G 6 3.578 -8.268 -19.526 1 43.13 ? S19 O9M 806 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#