data_6PDE # _model_server_result.job_id 6t8ya4mYSKAwbDYq7q6I8w _model_server_result.datetime_utc '2024-11-14 21:02:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 6PDE # _exptl.entry_id 6PDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.407 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-propoxybenzohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PDE _cell.length_a 46.081 _cell.length_b 56.383 _cell.length_c 122.684 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 C NA NA . A NA 802 1_555 H O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc6 C NA NA . A NA 802 1_555 H O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc7 C NA NA . A NA 802 1_555 H O HOH . A HOH 965 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc8 C NA NA . A NA 802 1_555 H O HOH . A HOH 985 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? # _chem_comp.formula 'C17 H19 F N2 O4 S' _chem_comp.formula_weight 366.407 _chem_comp.id O9V _chem_comp.mon_nstd_flag . _chem_comp.name "2-fluoro-3-methyl-N'-(phenylsulfonyl)-5-propoxybenzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 O9V doub 278 n y C23 C24 O9V sing 279 n y C22 C21 O9V sing 280 n y C24 C25 O9V doub 281 n y C21 C20 O9V doub 282 n y C25 C20 O9V sing 283 n y C08 C07 O9V sing 284 n n C20 S17 O9V sing 285 n n F10 C09 O9V sing 286 n n C07 C09 O9V doub 287 n y C07 C06 O9V sing 288 n y O18 S17 O9V doub 289 n n S17 O19 O9V doub 290 n n S17 N16 O9V sing 291 n n C09 C11 O9V sing 292 n y N15 N16 O9V sing 293 n n N15 C13 O9V sing 294 n n C06 C05 O9V doub 295 n y C11 C13 O9V sing 296 n n C11 C12 O9V doub 297 n y C13 O14 O9V doub 298 n n C05 C12 O9V sing 299 n y C05 O04 O9V sing 300 n n O04 C03 O9V sing 301 n n C03 C02 O9V sing 302 n n C02 C01 O9V sing 303 n n C21 H1 O9V sing 304 n n C22 H2 O9V sing 305 n n C24 H3 O9V sing 306 n n C01 H4 O9V sing 307 n n C01 H5 O9V sing 308 n n C01 H6 O9V sing 309 n n C02 H7 O9V sing 310 n n C02 H8 O9V sing 311 n n C03 H9 O9V sing 312 n n C03 H10 O9V sing 313 n n C06 H11 O9V sing 314 n n C08 H12 O9V sing 315 n n C08 H13 O9V sing 316 n n C08 H14 O9V sing 317 n n C12 H15 O9V sing 318 n n C23 H16 O9V sing 319 n n C25 H17 O9V sing 320 n n N15 H18 O9V sing 321 n n N16 H19 O9V sing 322 n n # _atom_sites.entry_id 6PDE _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 4 GOL A 1 803 510 GOL GOL . E 4 GOL A 1 804 511 GOL GOL . F 5 SO4 A 1 805 512 SO4 SO4 . G 6 O9V A 1 806 506 O9V LIG . H 7 HOH A 1 901 141 HOH HOH . H 7 HOH A 2 902 58 HOH HOH . H 7 HOH A 3 903 123 HOH HOH . H 7 HOH A 4 904 125 HOH HOH . H 7 HOH A 5 905 142 HOH HOH . H 7 HOH A 6 906 60 HOH HOH . H 7 HOH A 7 907 8 HOH HOH . H 7 HOH A 8 908 54 HOH HOH . H 7 HOH A 9 909 39 HOH HOH . H 7 HOH A 10 910 6 HOH HOH . H 7 HOH A 11 911 29 HOH HOH . H 7 HOH A 12 912 127 HOH HOH . H 7 HOH A 13 913 22 HOH HOH . H 7 HOH A 14 914 50 HOH HOH . H 7 HOH A 15 915 62 HOH HOH . H 7 HOH A 16 916 4 HOH HOH . H 7 HOH A 17 917 57 HOH HOH . H 7 HOH A 18 918 71 HOH HOH . H 7 HOH A 19 919 2 HOH HOH . H 7 HOH A 20 920 115 HOH HOH . H 7 HOH A 21 921 52 HOH HOH . H 7 HOH A 22 922 13 HOH HOH . H 7 HOH A 23 923 61 HOH HOH . H 7 HOH A 24 924 5 HOH HOH . H 7 HOH A 25 925 35 HOH HOH . H 7 HOH A 26 926 113 HOH HOH . H 7 HOH A 27 927 34 HOH HOH . H 7 HOH A 28 928 19 HOH HOH . H 7 HOH A 29 929 21 HOH HOH . H 7 HOH A 30 930 44 HOH HOH . H 7 HOH A 31 931 37 HOH HOH . H 7 HOH A 32 932 103 HOH HOH . H 7 HOH A 33 933 96 HOH HOH . H 7 HOH A 34 934 70 HOH HOH . H 7 HOH A 35 935 11 HOH HOH . H 7 HOH A 36 936 126 HOH HOH . H 7 HOH A 37 937 55 HOH HOH . H 7 HOH A 38 938 63 HOH HOH . H 7 HOH A 39 939 12 HOH HOH . H 7 HOH A 40 940 66 HOH HOH . H 7 HOH A 41 941 23 HOH HOH . H 7 HOH A 42 942 10 HOH HOH . H 7 HOH A 43 943 25 HOH HOH . H 7 HOH A 44 944 30 HOH HOH . H 7 HOH A 45 945 87 HOH HOH . H 7 HOH A 46 946 76 HOH HOH . H 7 HOH A 47 947 1 HOH HOH . H 7 HOH A 48 948 67 HOH HOH . H 7 HOH A 49 949 16 HOH HOH . H 7 HOH A 50 950 75 HOH HOH . H 7 HOH A 51 951 132 HOH HOH . H 7 HOH A 52 952 108 HOH HOH . H 7 HOH A 53 953 102 HOH HOH . H 7 HOH A 54 954 118 HOH HOH . H 7 HOH A 55 955 24 HOH HOH . H 7 HOH A 56 956 51 HOH HOH . H 7 HOH A 57 957 73 HOH HOH . H 7 HOH A 58 958 20 HOH HOH . H 7 HOH A 59 959 3 HOH HOH . H 7 HOH A 60 960 18 HOH HOH . H 7 HOH A 61 961 9 HOH HOH . H 7 HOH A 62 962 33 HOH HOH . H 7 HOH A 63 963 56 HOH HOH . H 7 HOH A 64 964 45 HOH HOH . H 7 HOH A 65 965 32 HOH HOH . H 7 HOH A 66 966 100 HOH HOH . H 7 HOH A 67 967 83 HOH HOH . H 7 HOH A 68 968 84 HOH HOH . H 7 HOH A 69 969 38 HOH HOH . H 7 HOH A 70 970 91 HOH HOH . H 7 HOH A 71 971 74 HOH HOH . H 7 HOH A 72 972 105 HOH HOH . H 7 HOH A 73 973 94 HOH HOH . H 7 HOH A 74 974 72 HOH HOH . H 7 HOH A 75 975 28 HOH HOH . H 7 HOH A 76 976 43 HOH HOH . H 7 HOH A 77 977 65 HOH HOH . H 7 HOH A 78 978 69 HOH HOH . H 7 HOH A 79 979 59 HOH HOH . H 7 HOH A 80 980 114 HOH HOH . H 7 HOH A 81 981 98 HOH HOH . H 7 HOH A 82 982 104 HOH HOH . H 7 HOH A 83 983 53 HOH HOH . H 7 HOH A 84 984 124 HOH HOH . H 7 HOH A 85 985 99 HOH HOH . H 7 HOH A 86 986 101 HOH HOH . H 7 HOH A 87 987 95 HOH HOH . H 7 HOH A 88 988 122 HOH HOH . H 7 HOH A 89 989 42 HOH HOH . H 7 HOH A 90 990 143 HOH HOH . H 7 HOH A 91 991 144 HOH HOH . H 7 HOH A 92 992 136 HOH HOH . H 7 HOH A 93 993 36 HOH HOH . H 7 HOH A 94 994 128 HOH HOH . H 7 HOH A 95 995 68 HOH HOH . H 7 HOH A 96 996 48 HOH HOH . H 7 HOH A 97 997 15 HOH HOH . H 7 HOH A 98 998 64 HOH HOH . H 7 HOH A 99 999 138 HOH HOH . H 7 HOH A 100 1000 26 HOH HOH . H 7 HOH A 101 1001 27 HOH HOH . H 7 HOH A 102 1002 17 HOH HOH . H 7 HOH A 103 1003 78 HOH HOH . H 7 HOH A 104 1004 89 HOH HOH . H 7 HOH A 105 1005 107 HOH HOH . H 7 HOH A 106 1006 120 HOH HOH . H 7 HOH A 107 1007 121 HOH HOH . H 7 HOH A 108 1008 47 HOH HOH . H 7 HOH A 109 1009 140 HOH HOH . H 7 HOH A 110 1010 92 HOH HOH . H 7 HOH A 111 1011 133 HOH HOH . H 7 HOH A 112 1012 14 HOH HOH . H 7 HOH A 113 1013 109 HOH HOH . H 7 HOH A 114 1014 139 HOH HOH . H 7 HOH A 115 1015 116 HOH HOH . H 7 HOH A 116 1016 119 HOH HOH . H 7 HOH A 117 1017 40 HOH HOH . H 7 HOH A 118 1018 46 HOH HOH . H 7 HOH A 119 1019 31 HOH HOH . H 7 HOH A 120 1020 129 HOH HOH . H 7 HOH A 121 1021 79 HOH HOH . H 7 HOH A 122 1022 86 HOH HOH . H 7 HOH A 123 1023 80 HOH HOH . H 7 HOH A 124 1024 131 HOH HOH . H 7 HOH A 125 1025 106 HOH HOH . H 7 HOH A 126 1026 135 HOH HOH . H 7 HOH A 127 1027 88 HOH HOH . H 7 HOH A 128 1028 111 HOH HOH . H 7 HOH A 129 1029 130 HOH HOH . H 7 HOH A 130 1030 81 HOH HOH . H 7 HOH A 131 1031 82 HOH HOH . H 7 HOH A 132 1032 117 HOH HOH . H 7 HOH A 133 1033 41 HOH HOH . H 7 HOH A 134 1034 112 HOH HOH . H 7 HOH A 135 1035 77 HOH HOH . H 7 HOH A 136 1036 134 HOH HOH . H 7 HOH A 137 1037 49 HOH HOH . H 7 HOH A 138 1038 85 HOH HOH . H 7 HOH A 139 1039 93 HOH HOH . H 7 HOH A 140 1040 90 HOH HOH . H 7 HOH A 141 1041 97 HOH HOH . H 7 HOH A 142 1042 137 HOH HOH . H 7 HOH A 143 1043 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 O9V . . . G 6 5.243 -10.68 -17.767 1 29.48 ? C13 O9V 806 A 1 HETATM 2 C C20 O9V . . . G 6 2.636 -8.431 -21.035 1 31.74 ? C20 O9V 806 A 1 HETATM 3 C C21 O9V . . . G 6 3.264 -9.387 -21.892 1 29.76 ? C21 O9V 806 A 1 HETATM 4 C C22 O9V . . . G 6 2.729 -9.644 -23.14 1 29.34 ? C22 O9V 806 A 1 HETATM 5 C C24 O9V . . . G 6 0.951 -8.021 -22.704 1 33.08 ? C24 O9V 806 A 1 HETATM 6 C C01 O9V . . . G 6 9.218 -15.129 -14.003 1 28.34 ? C01 O9V 806 A 1 HETATM 7 C C02 O9V . . . G 6 8.436 -16.196 -14.845 1 30.94 ? C02 O9V 806 A 1 HETATM 8 C C03 O9V . . . G 6 7.74 -15.576 -16.078 1 33.89 ? C03 O9V 806 A 1 HETATM 9 C C05 O9V . . . G 6 7.687 -13.598 -17.31 1 25.77 ? C05 O9V 806 A 1 HETATM 10 C C06 O9V . . . G 6 7.919 -13.968 -18.601 1 24.6 ? C06 O9V 806 A 1 HETATM 11 C C07 O9V . . . G 6 7.291 -13.278 -19.647 1 27.76 ? C07 O9V 806 A 1 HETATM 12 C C08 O9V . . . G 6 7.53 -13.662 -21.14 1 26.87 ? C08 O9V 806 A 1 HETATM 13 C C09 O9V . . . G 6 6.444 -12.235 -19.367 1 28.03 ? C09 O9V 806 A 1 HETATM 14 C C11 O9V . . . G 6 6.209 -11.864 -18.058 1 26.59 ? C11 O9V 806 A 1 HETATM 15 C C12 O9V . . . G 6 6.821 -12.543 -17.025 1 25.91 ? C12 O9V 806 A 1 HETATM 16 C C23 O9V . . . G 6 1.57 -8.967 -23.56 1 31.21 ? C23 O9V 806 A 1 HETATM 17 C C25 O9V . . . G 6 1.485 -7.758 -21.459 1 33.2 ? C25 O9V 806 A 1 HETATM 18 F F10 O9V . . . G 6 5.878 -11.607 -20.368 1 25.93 ? F10 O9V 806 A 1 HETATM 19 N N15 O9V . . . G 6 4.128 -10.501 -18.614 1 28.64 ? N15 O9V 806 A 1 HETATM 20 N N16 O9V . . . G 6 3.173 -9.423 -18.442 1 34.25 ? N16 O9V 806 A 1 HETATM 21 O O04 O9V . . . G 6 8.299 -14.266 -16.294 1 26.55 ? O04 O9V 806 A 1 HETATM 22 O O14 O9V . . . G 6 5.443 -9.933 -16.832 1 29.73 ? O14 O9V 806 A 1 HETATM 23 O O18 O9V . . . G 6 4.67 -7.729 -19.568 1 30.1 ? O18 O9V 806 A 1 HETATM 24 O O19 O9V . . . G 6 2.747 -6.94 -18.873 1 33.92 ? O19 O9V 806 A 1 HETATM 25 S S17 O9V . . . G 6 3.325 -8.098 -19.43 1 35.2 ? S17 O9V 806 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #