data_6PDG # _model_server_result.job_id yTyg5C1Rq-8yWZ0AxtNrkg _model_server_result.datetime_utc '2024-11-14 20:54:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 6PDG # _exptl.entry_id 6PDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.439 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-ethoxy-2-fluoro-3-methyl-N'-[(naphthalen-2-yl)sulfonyl]benzohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PDG _cell.length_a 45.923 _cell.length_b 56.284 _cell.length_c 123.743 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 97 A HIS 603 1_555 A N ALY 98 A ALY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C ALY 98 A ALY 604 1_555 A N THR 99 A THR 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A SG CYS 34 A CYS 540 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A SG CYS 37 A CYS 543 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A NE2 HIS 50 A HIS 556 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 A SG CYS 54 A CYS 560 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C NA NA . A NA 802 1_555 H O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc6 C NA NA . A NA 802 1_555 H O HOH . A HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc7 C NA NA . A NA 802 1_555 H O HOH . A HOH 1039 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? # _chem_comp.formula 'C20 H19 F N2 O4 S' _chem_comp.formula_weight 402.439 _chem_comp.id O9A _chem_comp.mon_nstd_flag . _chem_comp.name "5-ethoxy-2-fluoro-3-methyl-N'-[(naphthalen-2-yl)sulfonyl]benzohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 O9A doub 278 n y C24 C25 O9A sing 279 n y C23 C22 O9A sing 280 n y C25 C26 O9A doub 281 n y C22 C27 O9A sing 282 n y C22 C21 O9A doub 283 n y C27 C28 O9A doub 284 n y C26 C21 O9A sing 285 n y C21 C20 O9A sing 286 n y C28 C19 O9A sing 287 n y C20 C19 O9A doub 288 n y C07 C06 O9A sing 289 n n C19 S16 O9A sing 290 n n F09 C08 O9A sing 291 n n C06 C08 O9A doub 292 n y C06 C05 O9A sing 293 n y O18 S16 O9A doub 294 n n C08 C10 O9A sing 295 n y S16 O17 O9A doub 296 n n S16 N15 O9A sing 297 n n C05 C04 O9A doub 298 n y N14 N15 O9A sing 299 n n N14 C12 O9A sing 300 n n C10 C12 O9A sing 301 n n C10 C11 O9A doub 302 n y C12 O13 O9A doub 303 n n C04 C11 O9A sing 304 n y C04 O03 O9A sing 305 n n O03 C02 O9A sing 306 n n C02 C01 O9A sing 307 n n C20 H1 O9A sing 308 n n C24 H2 O9A sing 309 n n C26 H3 O9A sing 310 n n C28 H4 O9A sing 311 n n C01 H5 O9A sing 312 n n C01 H6 O9A sing 313 n n C01 H7 O9A sing 314 n n C02 H8 O9A sing 315 n n C02 H9 O9A sing 316 n n C05 H10 O9A sing 317 n n C07 H11 O9A sing 318 n n C07 H12 O9A sing 319 n n C07 H13 O9A sing 320 n n C11 H14 O9A sing 321 n n C23 H15 O9A sing 322 n n C25 H16 O9A sing 323 n n C27 H17 O9A sing 324 n n N14 H18 O9A sing 325 n n N15 H19 O9A sing 326 n n # _atom_sites.entry_id 6PDG _atom_sites.fract_transf_matrix[1][1] 0.021776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 506 ZN ZN . C 3 NA A 1 802 507 NA NA . D 4 GOL A 1 803 510 GOL GOL . E 4 GOL A 1 804 511 GOL GOL . F 5 SO4 A 1 805 512 SO4 SO4 . G 6 O9A A 1 806 506 O9A LIG . H 7 HOH A 1 901 53 HOH HOH . H 7 HOH A 2 902 71 HOH HOH . H 7 HOH A 3 903 8 HOH HOH . H 7 HOH A 4 904 146 HOH HOH . H 7 HOH A 5 905 45 HOH HOH . H 7 HOH A 6 906 171 HOH HOH . H 7 HOH A 7 907 29 HOH HOH . H 7 HOH A 8 908 138 HOH HOH . H 7 HOH A 9 909 85 HOH HOH . H 7 HOH A 10 910 40 HOH HOH . H 7 HOH A 11 911 149 HOH HOH . H 7 HOH A 12 912 44 HOH HOH . H 7 HOH A 13 913 161 HOH HOH . H 7 HOH A 14 914 82 HOH HOH . H 7 HOH A 15 915 13 HOH HOH . H 7 HOH A 16 916 11 HOH HOH . H 7 HOH A 17 917 73 HOH HOH . H 7 HOH A 18 918 7 HOH HOH . H 7 HOH A 19 919 56 HOH HOH . H 7 HOH A 20 920 166 HOH HOH . H 7 HOH A 21 921 69 HOH HOH . H 7 HOH A 22 922 32 HOH HOH . H 7 HOH A 23 923 160 HOH HOH . H 7 HOH A 24 924 159 HOH HOH . H 7 HOH A 25 925 23 HOH HOH . H 7 HOH A 26 926 31 HOH HOH . H 7 HOH A 27 927 9 HOH HOH . H 7 HOH A 28 928 2 HOH HOH . H 7 HOH A 29 929 37 HOH HOH . H 7 HOH A 30 930 167 HOH HOH . H 7 HOH A 31 931 46 HOH HOH . H 7 HOH A 32 932 65 HOH HOH . H 7 HOH A 33 933 19 HOH HOH . H 7 HOH A 34 934 1 HOH HOH . H 7 HOH A 35 935 12 HOH HOH . H 7 HOH A 36 936 10 HOH HOH . H 7 HOH A 37 937 79 HOH HOH . H 7 HOH A 38 938 60 HOH HOH . H 7 HOH A 39 939 55 HOH HOH . H 7 HOH A 40 940 36 HOH HOH . H 7 HOH A 41 941 87 HOH HOH . H 7 HOH A 42 942 30 HOH HOH . H 7 HOH A 43 943 59 HOH HOH . H 7 HOH A 44 944 20 HOH HOH . H 7 HOH A 45 945 151 HOH HOH . H 7 HOH A 46 946 49 HOH HOH . H 7 HOH A 47 947 139 HOH HOH . H 7 HOH A 48 948 22 HOH HOH . H 7 HOH A 49 949 42 HOH HOH . H 7 HOH A 50 950 35 HOH HOH . H 7 HOH A 51 951 83 HOH HOH . H 7 HOH A 52 952 64 HOH HOH . H 7 HOH A 53 953 77 HOH HOH . H 7 HOH A 54 954 47 HOH HOH . H 7 HOH A 55 955 39 HOH HOH . H 7 HOH A 56 956 133 HOH HOH . H 7 HOH A 57 957 127 HOH HOH . H 7 HOH A 58 958 143 HOH HOH . H 7 HOH A 59 959 28 HOH HOH . H 7 HOH A 60 960 21 HOH HOH . H 7 HOH A 61 961 25 HOH HOH . H 7 HOH A 62 962 75 HOH HOH . H 7 HOH A 63 963 52 HOH HOH . H 7 HOH A 64 964 3 HOH HOH . H 7 HOH A 65 965 6 HOH HOH . H 7 HOH A 66 966 51 HOH HOH . H 7 HOH A 67 967 116 HOH HOH . H 7 HOH A 68 968 157 HOH HOH . H 7 HOH A 69 969 66 HOH HOH . H 7 HOH A 70 970 110 HOH HOH . H 7 HOH A 71 971 4 HOH HOH . H 7 HOH A 72 972 101 HOH HOH . H 7 HOH A 73 973 123 HOH HOH . H 7 HOH A 74 974 63 HOH HOH . H 7 HOH A 75 975 132 HOH HOH . H 7 HOH A 76 976 99 HOH HOH . H 7 HOH A 77 977 78 HOH HOH . H 7 HOH A 78 978 26 HOH HOH . H 7 HOH A 79 979 90 HOH HOH . H 7 HOH A 80 980 134 HOH HOH . H 7 HOH A 81 981 41 HOH HOH . H 7 HOH A 82 982 50 HOH HOH . H 7 HOH A 83 983 155 HOH HOH . H 7 HOH A 84 984 131 HOH HOH . H 7 HOH A 85 985 58 HOH HOH . H 7 HOH A 86 986 140 HOH HOH . H 7 HOH A 87 987 130 HOH HOH . H 7 HOH A 88 988 88 HOH HOH . H 7 HOH A 89 989 164 HOH HOH . H 7 HOH A 90 990 117 HOH HOH . H 7 HOH A 91 991 43 HOH HOH . H 7 HOH A 92 992 80 HOH HOH . H 7 HOH A 93 993 150 HOH HOH . H 7 HOH A 94 994 16 HOH HOH . H 7 HOH A 95 995 142 HOH HOH . H 7 HOH A 96 996 105 HOH HOH . H 7 HOH A 97 997 76 HOH HOH . H 7 HOH A 98 998 38 HOH HOH . H 7 HOH A 99 999 108 HOH HOH . H 7 HOH A 100 1000 68 HOH HOH . H 7 HOH A 101 1001 72 HOH HOH . H 7 HOH A 102 1002 136 HOH HOH . H 7 HOH A 103 1003 48 HOH HOH . H 7 HOH A 104 1004 18 HOH HOH . H 7 HOH A 105 1005 112 HOH HOH . H 7 HOH A 106 1006 98 HOH HOH . H 7 HOH A 107 1007 92 HOH HOH . H 7 HOH A 108 1008 74 HOH HOH . H 7 HOH A 109 1009 137 HOH HOH . H 7 HOH A 110 1010 84 HOH HOH . H 7 HOH A 111 1011 93 HOH HOH . H 7 HOH A 112 1012 70 HOH HOH . H 7 HOH A 113 1013 5 HOH HOH . H 7 HOH A 114 1014 27 HOH HOH . H 7 HOH A 115 1015 120 HOH HOH . H 7 HOH A 116 1016 125 HOH HOH . H 7 HOH A 117 1017 61 HOH HOH . H 7 HOH A 118 1018 168 HOH HOH . H 7 HOH A 119 1019 118 HOH HOH . H 7 HOH A 120 1020 169 HOH HOH . H 7 HOH A 121 1021 106 HOH HOH . H 7 HOH A 122 1022 91 HOH HOH . H 7 HOH A 123 1023 14 HOH HOH . H 7 HOH A 124 1024 54 HOH HOH . H 7 HOH A 125 1025 152 HOH HOH . H 7 HOH A 126 1026 121 HOH HOH . H 7 HOH A 127 1027 126 HOH HOH . H 7 HOH A 128 1028 62 HOH HOH . H 7 HOH A 129 1029 141 HOH HOH . H 7 HOH A 130 1030 129 HOH HOH . H 7 HOH A 131 1031 94 HOH HOH . H 7 HOH A 132 1032 15 HOH HOH . H 7 HOH A 133 1033 153 HOH HOH . H 7 HOH A 134 1034 17 HOH HOH . H 7 HOH A 135 1035 113 HOH HOH . H 7 HOH A 136 1036 109 HOH HOH . H 7 HOH A 137 1037 102 HOH HOH . H 7 HOH A 138 1038 156 HOH HOH . H 7 HOH A 139 1039 33 HOH HOH . H 7 HOH A 140 1040 111 HOH HOH . H 7 HOH A 141 1041 154 HOH HOH . H 7 HOH A 142 1042 34 HOH HOH . H 7 HOH A 143 1043 163 HOH HOH . H 7 HOH A 144 1044 86 HOH HOH . H 7 HOH A 145 1045 24 HOH HOH . H 7 HOH A 146 1046 135 HOH HOH . H 7 HOH A 147 1047 95 HOH HOH . H 7 HOH A 148 1048 147 HOH HOH . H 7 HOH A 149 1049 165 HOH HOH . H 7 HOH A 150 1050 67 HOH HOH . H 7 HOH A 151 1051 107 HOH HOH . H 7 HOH A 152 1052 124 HOH HOH . H 7 HOH A 153 1053 97 HOH HOH . H 7 HOH A 154 1054 57 HOH HOH . H 7 HOH A 155 1055 119 HOH HOH . H 7 HOH A 156 1056 103 HOH HOH . H 7 HOH A 157 1057 158 HOH HOH . H 7 HOH A 158 1058 114 HOH HOH . H 7 HOH A 159 1059 122 HOH HOH . H 7 HOH A 160 1060 170 HOH HOH . H 7 HOH A 161 1061 89 HOH HOH . H 7 HOH A 162 1062 115 HOH HOH . H 7 HOH A 163 1063 104 HOH HOH . H 7 HOH A 164 1064 100 HOH HOH . H 7 HOH A 165 1065 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 O9A . . . G 6 6.023 -11.762 -18.372 1 23.11 ? C10 O9A 806 A 1 HETATM 2 C C20 O9A . . . G 6 1.507 -7.226 -21.623 1 28.03 ? C20 O9A 806 A 1 HETATM 3 C C21 O9A . . . G 6 0.962 -7.345 -22.937 1 29.23 ? C21 O9A 806 A 1 HETATM 4 C C22 O9A . . . G 6 1.44 -8.299 -23.788 1 26.51 ? C22 O9A 806 A 1 HETATM 5 C C24 O9A . . . G 6 -0.116 -7.558 -25.514 1 28.92 ? C24 O9A 806 A 1 HETATM 6 C C26 O9A . . . G 6 -0.075 -6.464 -23.359 1 31.98 ? C26 O9A 806 A 1 HETATM 7 C C28 O9A . . . G 6 3.012 -9.063 -22.084 1 23.65 ? C28 O9A 806 A 1 HETATM 8 C C01 O9A . . . G 6 8.286 -15.821 -14.888 1 21.11 ? C01 O9A 806 A 1 HETATM 9 C C02 O9A . . . G 6 7.736 -15.475 -16.256 1 28.71 ? C02 O9A 806 A 1 HETATM 10 C C04 O9A . . . G 6 7.472 -13.502 -17.584 1 23.15 ? C04 O9A 806 A 1 HETATM 11 C C05 O9A . . . G 6 7.716 -13.907 -18.896 1 21.11 ? C05 O9A 806 A 1 HETATM 12 C C06 O9A . . . G 6 7.098 -13.235 -19.943 1 23.16 ? C06 O9A 806 A 1 HETATM 13 C C07 O9A . . . G 6 7.337 -13.653 -21.382 1 23.9 ? C07 O9A 806 A 1 HETATM 14 C C08 O9A . . . G 6 6.257 -12.169 -19.68 1 23 ? C08 O9A 806 A 1 HETATM 15 C C11 O9A . . . G 6 6.636 -12.43 -17.328 1 21.11 ? C11 O9A 806 A 1 HETATM 16 C C12 O9A . . . G 6 5.105 -10.598 -18.064 1 26.82 ? C12 O9A 806 A 1 HETATM 17 C C19 O9A . . . G 6 2.514 -8.092 -21.216 1 26.81 ? C19 O9A 806 A 1 HETATM 18 C C23 O9A . . . G 6 0.898 -8.418 -25.105 1 25.4 ? C23 O9A 806 A 1 HETATM 19 C C25 O9A . . . G 6 -0.605 -6.581 -24.641 1 31.93 ? C25 O9A 806 A 1 HETATM 20 C C27 O9A . . . G 6 2.482 -9.179 -23.365 1 24.82 ? C27 O9A 806 A 1 HETATM 21 F F09 O9A . . . G 6 5.68 -11.533 -20.7 1 23.55 ? F09 O9A 806 A 1 HETATM 22 N N14 O9A . . . G 6 3.972 -10.35 -18.894 1 26.31 ? N14 O9A 806 A 1 HETATM 23 N N15 O9A . . . G 6 3.08 -9.302 -18.682 1 30.44 ? N15 O9A 806 A 1 HETATM 24 O O03 O9A . . . G 6 8.096 -14.145 -16.503 1 23.02 ? O03 O9A 806 A 1 HETATM 25 O O13 O9A . . . G 6 5.35 -9.89 -17.102 1 24.36 ? O13 O9A 806 A 1 HETATM 26 O O17 O9A . . . G 6 2.618 -6.769 -18.965 1 24.4 ? O17 O9A 806 A 1 HETATM 27 O O18 O9A . . . G 6 4.572 -7.53 -19.748 1 27.77 ? O18 O9A 806 A 1 HETATM 28 S S16 O9A . . . G 6 3.202 -7.924 -19.589 1 27.4 ? S16 O9A 806 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #