data_6PDH
#
_model_server_result.job_id            y_ZcvfwGLUIsbiNCi1R4vA 
_model_server_result.datetime_utc      '2024-12-26 14:21:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6PDH 
#
_exptl.entry_id    6PDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.113 
_cell.angle_gamma         90 
_cell.entry_id            6PDH 
_cell.length_a            119.214 
_cell.length_b            50.295 
_cell.length_c            91.98 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf2 B SG CYS 30 B CYS 30 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 292 n n 
C1 C2 PGE sing 293 n n 
C1 H1 PGE sing 294 n n 
C1 H12 PGE sing 295 n n 
O1 HO1 PGE sing 296 n n 
C2 O2 PGE sing 297 n n 
C2 H2 PGE sing 298 n n 
C2 H22 PGE sing 299 n n 
O2 C3 PGE sing 300 n n 
C3 C4 PGE sing 301 n n 
C3 H3 PGE sing 302 n n 
C3 H32 PGE sing 303 n n 
C4 O3 PGE sing 304 n n 
C4 H4 PGE sing 305 n n 
C4 H42 PGE sing 306 n n 
O4 C6 PGE sing 307 n n 
O4 HO4 PGE sing 308 n n 
C6 C5 PGE sing 309 n n 
C6 H6 PGE sing 310 n n 
C6 H62 PGE sing 311 n n 
C5 O3 PGE sing 312 n n 
C5 H5 PGE sing 313 n n 
C5 H52 PGE sing 314 n n 
#
_atom_sites.entry_id                     6PDH 
_atom_sites.fract_transf_matrix[1][1]    0.008388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004481 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019883 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OAV A 1 201 201 OAV 690 . 
D 3 PGE A 1 202 301 PGE PGE . 
E 4 HOH A 1 301 88 HOH HOH . 
E 4 HOH A 2 302 64 HOH HOH . 
E 4 HOH A 3 303 56 HOH HOH . 
E 4 HOH A 4 304 5 HOH HOH . 
E 4 HOH A 5 305 94 HOH HOH . 
E 4 HOH A 6 306 126 HOH HOH . 
E 4 HOH A 7 307 7 HOH HOH . 
E 4 HOH A 8 308 129 HOH HOH . 
E 4 HOH A 9 309 14 HOH HOH . 
E 4 HOH A 10 310 128 HOH HOH . 
E 4 HOH A 11 311 44 HOH HOH . 
E 4 HOH A 12 312 42 HOH HOH . 
E 4 HOH A 13 313 61 HOH HOH . 
E 4 HOH A 14 314 9 HOH HOH . 
E 4 HOH A 15 315 32 HOH HOH . 
E 4 HOH A 16 316 49 HOH HOH . 
E 4 HOH A 17 317 136 HOH HOH . 
E 4 HOH A 18 318 58 HOH HOH . 
E 4 HOH A 19 319 65 HOH HOH . 
E 4 HOH A 20 320 12 HOH HOH . 
E 4 HOH A 21 321 1 HOH HOH . 
E 4 HOH A 22 322 10 HOH HOH . 
E 4 HOH A 23 323 98 HOH HOH . 
E 4 HOH A 24 324 15 HOH HOH . 
E 4 HOH A 25 325 81 HOH HOH . 
E 4 HOH A 26 326 83 HOH HOH . 
E 4 HOH A 27 327 25 HOH HOH . 
E 4 HOH A 28 328 68 HOH HOH . 
E 4 HOH A 29 329 78 HOH HOH . 
E 4 HOH A 30 330 48 HOH HOH . 
E 4 HOH A 31 331 51 HOH HOH . 
E 4 HOH A 32 332 100 HOH HOH . 
E 4 HOH A 33 333 31 HOH HOH . 
E 4 HOH A 34 334 43 HOH HOH . 
E 4 HOH A 35 335 123 HOH HOH . 
E 4 HOH A 36 336 35 HOH HOH . 
E 4 HOH A 37 337 18 HOH HOH . 
E 4 HOH A 38 338 113 HOH HOH . 
E 4 HOH A 39 339 52 HOH HOH . 
E 4 HOH A 40 340 95 HOH HOH . 
E 4 HOH A 41 341 112 HOH HOH . 
E 4 HOH A 42 342 23 HOH HOH . 
E 4 HOH A 43 343 97 HOH HOH . 
E 4 HOH A 44 344 117 HOH HOH . 
E 4 HOH A 45 345 134 HOH HOH . 
E 4 HOH A 46 346 135 HOH HOH . 
E 4 HOH A 47 347 33 HOH HOH . 
E 4 HOH A 48 348 21 HOH HOH . 
E 4 HOH A 49 349 114 HOH HOH . 
E 4 HOH A 50 350 85 HOH HOH . 
E 4 HOH A 51 351 53 HOH HOH . 
E 4 HOH A 52 352 102 HOH HOH . 
E 4 HOH A 53 353 84 HOH HOH . 
E 4 HOH A 54 354 77 HOH HOH . 
E 4 HOH A 55 355 57 HOH HOH . 
E 4 HOH A 56 356 66 HOH HOH . 
E 4 HOH A 57 357 50 HOH HOH . 
E 4 HOH A 58 358 55 HOH HOH . 
E 4 HOH A 59 359 63 HOH HOH . 
F 4 HOH B 1 201 119 HOH HOH . 
F 4 HOH B 2 202 69 HOH HOH . 
F 4 HOH B 3 203 19 HOH HOH . 
F 4 HOH B 4 204 17 HOH HOH . 
F 4 HOH B 5 205 4 HOH HOH . 
F 4 HOH B 6 206 2 HOH HOH . 
F 4 HOH B 7 207 121 HOH HOH . 
F 4 HOH B 8 208 6 HOH HOH . 
F 4 HOH B 9 209 59 HOH HOH . 
F 4 HOH B 10 210 104 HOH HOH . 
F 4 HOH B 11 211 29 HOH HOH . 
F 4 HOH B 12 212 89 HOH HOH . 
F 4 HOH B 13 213 38 HOH HOH . 
F 4 HOH B 14 214 41 HOH HOH . 
F 4 HOH B 15 215 131 HOH HOH . 
F 4 HOH B 16 216 116 HOH HOH . 
F 4 HOH B 17 217 72 HOH HOH . 
F 4 HOH B 18 218 30 HOH HOH . 
F 4 HOH B 19 219 13 HOH HOH . 
F 4 HOH B 20 220 34 HOH HOH . 
F 4 HOH B 21 221 70 HOH HOH . 
F 4 HOH B 22 222 101 HOH HOH . 
F 4 HOH B 23 223 75 HOH HOH . 
F 4 HOH B 24 224 37 HOH HOH . 
F 4 HOH B 25 225 22 HOH HOH . 
F 4 HOH B 26 226 93 HOH HOH . 
F 4 HOH B 27 227 87 HOH HOH . 
F 4 HOH B 28 228 133 HOH HOH . 
F 4 HOH B 29 229 27 HOH HOH . 
F 4 HOH B 30 230 20 HOH HOH . 
F 4 HOH B 31 231 26 HOH HOH . 
F 4 HOH B 32 232 16 HOH HOH . 
F 4 HOH B 33 233 39 HOH HOH . 
F 4 HOH B 34 234 92 HOH HOH . 
F 4 HOH B 35 235 91 HOH HOH . 
F 4 HOH B 36 236 76 HOH HOH . 
F 4 HOH B 37 237 24 HOH HOH . 
F 4 HOH B 38 238 124 HOH HOH . 
F 4 HOH B 39 239 96 HOH HOH . 
F 4 HOH B 40 240 71 HOH HOH . 
F 4 HOH B 41 241 82 HOH HOH . 
F 4 HOH B 42 242 36 HOH HOH . 
F 4 HOH B 43 243 74 HOH HOH . 
F 4 HOH B 44 244 80 HOH HOH . 
F 4 HOH B 45 245 86 HOH HOH . 
F 4 HOH B 46 246 54 HOH HOH . 
F 4 HOH B 47 247 45 HOH HOH . 
F 4 HOH B 48 248 40 HOH HOH . 
F 4 HOH B 49 249 73 HOH HOH . 
F 4 HOH B 50 250 130 HOH HOH . 
F 4 HOH B 51 251 103 HOH HOH . 
F 4 HOH B 52 252 47 HOH HOH . 
F 4 HOH B 53 253 105 HOH HOH . 
F 4 HOH B 54 254 67 HOH HOH . 
F 4 HOH B 55 255 90 HOH HOH . 
F 4 HOH B 56 256 28 HOH HOH . 
F 4 HOH B 57 257 125 HOH HOH . 
F 4 HOH B 58 258 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . D 3 43.024 -2.412 13.582 1 62.34 ? C1 PGE 202 A 1 
HETATM 2 O O1 PGE . . . D 3 42.383 -2.703 12.348 1 47.71 ? O1 PGE 202 A 1 
HETATM 3 C C2 PGE . . . D 3 42.564 -1.041 14.007 1 69.1 ? C2 PGE 202 A 1 
HETATM 4 O O2 PGE . . . D 3 42.886 -0.748 15.346 1 70.99 ? O2 PGE 202 A 1 
HETATM 5 C C3 PGE . . . D 3 42.129 0.343 15.819 1 69.8 ? C3 PGE 202 A 1 
HETATM 6 C C4 PGE . . . D 3 42.728 0.855 17.111 1 68.92 ? C4 PGE 202 A 1 
HETATM 7 O O4 PGE . . . D 3 42.939 4.703 18.569 1 37.56 ? O4 PGE 202 A 1 
HETATM 8 C C6 PGE . . . D 3 41.991 3.766 18.087 1 46.11 ? C6 PGE 202 A 1 
HETATM 9 C C5 PGE . . . D 3 42.211 2.426 18.762 1 53.59 ? C5 PGE 202 A 1 
HETATM 10 O O3 PGE . . . D 3 41.71 1.4 17.929 1 62.61 ? O3 PGE 202 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           40 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#