data_6PDP # _model_server_result.job_id gGBJ8vOY9mvUw4wC1nUyyQ _model_server_result.datetime_utc '2024-11-04 20:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6PDP # _exptl.entry_id 6PDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.462 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-(acetylamino)-1-benzothiophen-4-yl]-N-cyclopropylthiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PDP _cell.length_a 94.14 _cell.length_b 94.14 _cell.length_c 80.131 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H16 N2 O2 S2' _chem_comp.formula_weight 356.462 _chem_comp.id OBY _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-(acetylamino)-1-benzothiophen-4-yl]-N-cyclopropylthiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 OBY doub 237 n y C9 C10 OBY sing 238 n y C8 C7 OBY sing 239 n y C10 S2 OBY sing 240 n y C10 C11 OBY doub 241 n y S2 C12 OBY sing 242 n y C7 C6 OBY doub 243 n y O2 C14 OBY doub 244 n n C11 C6 OBY sing 245 n y C11 C13 OBY sing 246 n y C6 C3 OBY sing 247 n n C12 C13 OBY doub 248 n y C12 N2 OBY sing 249 n n C14 N2 OBY sing 250 n n C14 C17 OBY sing 251 n n C3 S1 OBY sing 252 n y C3 C4 OBY doub 253 n y S1 C2 OBY sing 254 n y C4 C5 OBY sing 255 n y C2 C5 OBY doub 256 n y C2 C1 OBY sing 257 n n O1 C1 OBY doub 258 n n C1 N1 OBY sing 259 n n N1 C15 OBY sing 260 n n C15 C18 OBY sing 261 n n C15 C16 OBY sing 262 n n C18 C16 OBY sing 263 n n N1 H1 OBY sing 264 n n C4 H4 OBY sing 265 n n C5 H6 OBY sing 266 n n C7 H8 OBY sing 267 n n C8 H9 OBY sing 268 n n C9 H10 OBY sing 269 n n C13 H11 OBY sing 270 n n N2 H12 OBY sing 271 n n C15 H13 OBY sing 272 n n C16 H14 OBY sing 273 n n C16 H15 OBY sing 274 n n C17 H16 OBY sing 275 n n C17 H17 OBY sing 276 n n C17 H18 OBY sing 277 n n C18 H19 OBY sing 278 n n C18 H20 OBY sing 279 n n # _atom_sites.entry_id 6PDP _atom_sites.fract_transf_matrix[1][1] 0.010622 _atom_sites.fract_transf_matrix[1][2] 0.006133 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 501 501 SO4 SO4 . D 4 OBY A 1 502 1001 OBY UNL . E 5 HOH A 1 601 3 HOH HOH . E 5 HOH A 2 602 5 HOH HOH . E 5 HOH A 3 603 14 HOH HOH . E 5 HOH A 4 604 1 HOH HOH . E 5 HOH A 5 605 13 HOH HOH . E 5 HOH A 6 606 18 HOH HOH . E 5 HOH A 7 607 2 HOH HOH . E 5 HOH A 8 608 16 HOH HOH . E 5 HOH A 9 609 6 HOH HOH . E 5 HOH A 10 610 4 HOH HOH . E 5 HOH A 11 611 7 HOH HOH . E 5 HOH A 12 612 19 HOH HOH . E 5 HOH A 13 613 8 HOH HOH . E 5 HOH A 14 614 12 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 9 HOH HOH . E 5 HOH A 17 617 11 HOH HOH . E 5 HOH A 18 618 10 HOH HOH . F 5 HOH B 1 101 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OBY . . . D 4 92.219 80.653 0.459 1 81.11 ? N1 OBY 502 A 1 HETATM 2 C C1 OBY . . . D 4 92.269 80.487 -0.876 1 79.68 ? C1 OBY 502 A 1 HETATM 3 O O1 OBY . . . D 4 93.121 79.805 -1.45 1 80.96 ? O1 OBY 502 A 1 HETATM 4 C C2 OBY . . . D 4 91.186 81.167 -1.651 1 76 ? C2 OBY 502 A 1 HETATM 5 S S1 OBY . . . D 4 91.232 81.09 -3.372 1 72.38 ? S1 OBY 502 A 1 HETATM 6 C C3 OBY . . . D 4 89.653 81.775 -3.497 1 69.92 ? C3 OBY 502 A 1 HETATM 7 C C4 OBY . . . D 4 89.164 82.078 -2.253 1 71.18 ? C4 OBY 502 A 1 HETATM 8 C C5 OBY . . . D 4 90.092 81.861 -1.222 1 72.83 ? C5 OBY 502 A 1 HETATM 9 C C6 OBY . . . D 4 89.011 81.995 -4.816 1 64.74 ? C6 OBY 502 A 1 HETATM 10 C C7 OBY . . . D 4 89.79 82.005 -5.958 1 63.1 ? C7 OBY 502 A 1 HETATM 11 C C8 OBY . . . D 4 89.258 82.209 -7.219 1 63.09 ? C8 OBY 502 A 1 HETATM 12 C C9 OBY . . . D 4 87.908 82.406 -7.388 1 60.88 ? C9 OBY 502 A 1 HETATM 13 C C10 OBY . . . D 4 87.085 82.399 -6.261 1 59.62 ? C10 OBY 502 A 1 HETATM 14 C C11 OBY . . . D 4 87.616 82.194 -4.966 1 60.69 ? C11 OBY 502 A 1 HETATM 15 S S2 OBY . . . D 4 85.366 82.634 -6.254 1 61.75 ? S2 OBY 502 A 1 HETATM 16 C C12 OBY . . . D 4 85.287 82.42 -4.527 1 57.99 ? C12 OBY 502 A 1 HETATM 17 C C13 OBY . . . D 4 86.587 82.222 -3.971 1 57.73 ? C13 OBY 502 A 1 HETATM 18 N N2 OBY . . . D 4 84.093 82.453 -3.836 1 56.91 ? N2 OBY 502 A 1 HETATM 19 C C14 OBY . . . D 4 82.858 82.612 -4.396 1 56.55 ? C14 OBY 502 A 1 HETATM 20 C C15 OBY . . . D 4 93.016 79.893 1.404 1 79.24 ? C15 OBY 502 A 1 HETATM 21 C C16 OBY . . . D 4 93.379 80.536 2.698 1 77.61 ? C16 OBY 502 A 1 HETATM 22 O O2 OBY . . . D 4 82.721 82.795 -5.597 1 59.05 ? O2 OBY 502 A 1 HETATM 23 C C17 OBY . . . D 4 81.714 82.545 -3.435 1 53.49 ? C17 OBY 502 A 1 HETATM 24 C C18 OBY . . . D 4 94.42 80.322 1.657 1 77.75 ? C18 OBY 502 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #