data_6PDV
#
_model_server_result.job_id            0YMvjvAPuVoR-0SP78Ja9w 
_model_server_result.datetime_utc      '2024-12-18 01:42:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6PDV 
#
_exptl.entry_id    6PDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.25 
_cell.angle_gamma         90 
_cell.entry_id            6PDV 
_cell.length_a            41.23 
_cell.length_b            42.4 
_cell.length_c            72.01 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N SER 2 A SER 2 1_555 C CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc2 A N HIS 3 A HIS 3 1_555 C CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A N HIS 4 A HIS 4 1_555 C CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 A ND1 HIS 4 A HIS 4 1_555 C CU CU . A CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc5 A NE2 HIS 94 A HIS 94 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc6 A NE2 HIS 96 A HIS 96 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc7 A ND1 HIS 119 A HIS 119 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc8 B CU CU . A CU 301 1_555 E O1 NO2 . A NO2 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc9 C CU CU . A CU 302 1_555 F O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 336 n n 
C C2 TRS sing 337 n n 
C C3 TRS sing 338 n n 
C N TRS sing 339 n n 
C1 O1 TRS sing 340 n n 
C1 H11 TRS sing 341 n n 
C1 H12 TRS sing 342 n n 
C2 O2 TRS sing 343 n n 
C2 H21 TRS sing 344 n n 
C2 H22 TRS sing 345 n n 
C3 O3 TRS sing 346 n n 
C3 H31 TRS sing 347 n n 
C3 H32 TRS sing 348 n n 
N HN1 TRS sing 349 n n 
N HN2 TRS sing 350 n n 
N HN3 TRS sing 351 n n 
O1 HO1 TRS sing 352 n n 
O2 HO2 TRS sing 353 n n 
O3 HO3 TRS sing 354 n n 
#
_atom_sites.entry_id                     6PDV 
_atom_sites.fract_transf_matrix[1][1]    0.024254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00616 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 301 301 CU LIG . 
C 2 CU A 1 302 401 CU LIG . 
D 3 TRS A 1 303 501 TRS TRS . 
E 4 NO2 A 1 304 503 NO2 NO2 . 
F 5 HOH A 1 401 197 HOH HOH . 
F 5 HOH A 2 402 200 HOH HOH . 
F 5 HOH A 3 403 198 HOH HOH . 
F 5 HOH A 4 404 175 HOH HOH . 
F 5 HOH A 5 405 202 HOH HOH . 
F 5 HOH A 6 406 161 HOH HOH . 
F 5 HOH A 7 407 189 HOH HOH . 
F 5 HOH A 8 408 13 HOH HOH . 
F 5 HOH A 9 409 195 HOH HOH . 
F 5 HOH A 10 410 83 HOH HOH . 
F 5 HOH A 11 411 154 HOH HOH . 
F 5 HOH A 12 412 207 HOH HOH . 
F 5 HOH A 13 413 196 HOH HOH . 
F 5 HOH A 14 414 188 HOH HOH . 
F 5 HOH A 15 415 38 HOH HOH . 
F 5 HOH A 16 416 187 HOH HOH . 
F 5 HOH A 17 417 96 HOH HOH . 
F 5 HOH A 18 418 134 HOH HOH . 
F 5 HOH A 19 419 11 HOH HOH . 
F 5 HOH A 20 420 180 HOH HOH . 
F 5 HOH A 21 421 199 HOH HOH . 
F 5 HOH A 22 422 80 HOH HOH . 
F 5 HOH A 23 423 135 HOH HOH . 
F 5 HOH A 24 424 127 HOH HOH . 
F 5 HOH A 25 425 53 HOH HOH . 
F 5 HOH A 26 426 125 HOH HOH . 
F 5 HOH A 27 427 8 HOH HOH . 
F 5 HOH A 28 428 61 HOH HOH . 
F 5 HOH A 29 429 70 HOH HOH . 
F 5 HOH A 30 430 88 HOH HOH . 
F 5 HOH A 31 431 78 HOH HOH . 
F 5 HOH A 32 432 95 HOH HOH . 
F 5 HOH A 33 433 118 HOH HOH . 
F 5 HOH A 34 434 170 HOH HOH . 
F 5 HOH A 35 435 104 HOH HOH . 
F 5 HOH A 36 436 74 HOH HOH . 
F 5 HOH A 37 437 164 HOH HOH . 
F 5 HOH A 38 438 120 HOH HOH . 
F 5 HOH A 39 439 2 HOH HOH . 
F 5 HOH A 40 440 18 HOH HOH . 
F 5 HOH A 41 441 169 HOH HOH . 
F 5 HOH A 42 442 147 HOH HOH . 
F 5 HOH A 43 443 21 HOH HOH . 
F 5 HOH A 44 444 82 HOH HOH . 
F 5 HOH A 45 445 46 HOH HOH . 
F 5 HOH A 46 446 55 HOH HOH . 
F 5 HOH A 47 447 206 HOH HOH . 
F 5 HOH A 48 448 26 HOH HOH . 
F 5 HOH A 49 449 173 HOH HOH . 
F 5 HOH A 50 450 103 HOH HOH . 
F 5 HOH A 51 451 114 HOH HOH . 
F 5 HOH A 52 452 1 HOH HOH . 
F 5 HOH A 53 453 159 HOH HOH . 
F 5 HOH A 54 454 167 HOH HOH . 
F 5 HOH A 55 455 174 HOH HOH . 
F 5 HOH A 56 456 158 HOH HOH . 
F 5 HOH A 57 457 126 HOH HOH . 
F 5 HOH A 58 458 14 HOH HOH . 
F 5 HOH A 59 459 19 HOH HOH . 
F 5 HOH A 60 460 194 HOH HOH . 
F 5 HOH A 61 461 75 HOH HOH . 
F 5 HOH A 62 462 6 HOH HOH . 
F 5 HOH A 63 463 138 HOH HOH . 
F 5 HOH A 64 464 28 HOH HOH . 
F 5 HOH A 65 465 90 HOH HOH . 
F 5 HOH A 66 466 10 HOH HOH . 
F 5 HOH A 67 467 39 HOH HOH . 
F 5 HOH A 68 468 15 HOH HOH . 
F 5 HOH A 69 469 146 HOH HOH . 
F 5 HOH A 70 470 22 HOH HOH . 
F 5 HOH A 71 471 85 HOH HOH . 
F 5 HOH A 72 472 4 HOH HOH . 
F 5 HOH A 73 473 23 HOH HOH . 
F 5 HOH A 74 474 49 HOH HOH . 
F 5 HOH A 75 475 66 HOH HOH . 
F 5 HOH A 76 476 5 HOH HOH . 
F 5 HOH A 77 477 32 HOH HOH . 
F 5 HOH A 78 478 168 HOH HOH . 
F 5 HOH A 79 479 131 HOH HOH . 
F 5 HOH A 80 480 57 HOH HOH . 
F 5 HOH A 81 481 190 HOH HOH . 
F 5 HOH A 82 482 29 HOH HOH . 
F 5 HOH A 83 483 94 HOH HOH . 
F 5 HOH A 84 484 43 HOH HOH . 
F 5 HOH A 85 485 133 HOH HOH . 
F 5 HOH A 86 486 142 HOH HOH . 
F 5 HOH A 87 487 107 HOH HOH . 
F 5 HOH A 88 488 106 HOH HOH . 
F 5 HOH A 89 489 7 HOH HOH . 
F 5 HOH A 90 490 148 HOH HOH . 
F 5 HOH A 91 491 183 HOH HOH . 
F 5 HOH A 92 492 30 HOH HOH . 
F 5 HOH A 93 493 212 HOH HOH . 
F 5 HOH A 94 494 112 HOH HOH . 
F 5 HOH A 95 495 69 HOH HOH . 
F 5 HOH A 96 496 160 HOH HOH . 
F 5 HOH A 97 497 67 HOH HOH . 
F 5 HOH A 98 498 20 HOH HOH . 
F 5 HOH A 99 499 176 HOH HOH . 
F 5 HOH A 100 500 17 HOH HOH . 
F 5 HOH A 101 501 63 HOH HOH . 
F 5 HOH A 102 502 156 HOH HOH . 
F 5 HOH A 103 503 141 HOH HOH . 
F 5 HOH A 104 504 45 HOH HOH . 
F 5 HOH A 105 505 48 HOH HOH . 
F 5 HOH A 106 506 58 HOH HOH . 
F 5 HOH A 107 507 3 HOH HOH . 
F 5 HOH A 108 508 77 HOH HOH . 
F 5 HOH A 109 509 128 HOH HOH . 
F 5 HOH A 110 510 71 HOH HOH . 
F 5 HOH A 111 511 110 HOH HOH . 
F 5 HOH A 112 512 31 HOH HOH . 
F 5 HOH A 113 513 179 HOH HOH . 
F 5 HOH A 114 514 52 HOH HOH . 
F 5 HOH A 115 515 101 HOH HOH . 
F 5 HOH A 116 516 117 HOH HOH . 
F 5 HOH A 117 517 123 HOH HOH . 
F 5 HOH A 118 518 33 HOH HOH . 
F 5 HOH A 119 519 122 HOH HOH . 
F 5 HOH A 120 520 111 HOH HOH . 
F 5 HOH A 121 521 137 HOH HOH . 
F 5 HOH A 122 522 132 HOH HOH . 
F 5 HOH A 123 523 25 HOH HOH . 
F 5 HOH A 124 524 41 HOH HOH . 
F 5 HOH A 125 525 40 HOH HOH . 
F 5 HOH A 126 526 87 HOH HOH . 
F 5 HOH A 127 527 165 HOH HOH . 
F 5 HOH A 128 528 116 HOH HOH . 
F 5 HOH A 129 529 9 HOH HOH . 
F 5 HOH A 130 530 149 HOH HOH . 
F 5 HOH A 131 531 124 HOH HOH . 
F 5 HOH A 132 532 34 HOH HOH . 
F 5 HOH A 133 533 162 HOH HOH . 
F 5 HOH A 134 534 51 HOH HOH . 
F 5 HOH A 135 535 181 HOH HOH . 
F 5 HOH A 136 536 109 HOH HOH . 
F 5 HOH A 137 537 113 HOH HOH . 
F 5 HOH A 138 538 16 HOH HOH . 
F 5 HOH A 139 539 129 HOH HOH . 
F 5 HOH A 140 540 102 HOH HOH . 
F 5 HOH A 141 541 36 HOH HOH . 
F 5 HOH A 142 542 35 HOH HOH . 
F 5 HOH A 143 543 108 HOH HOH . 
F 5 HOH A 144 544 211 HOH HOH . 
F 5 HOH A 145 545 84 HOH HOH . 
F 5 HOH A 146 546 203 HOH HOH . 
F 5 HOH A 147 547 155 HOH HOH . 
F 5 HOH A 148 548 65 HOH HOH . 
F 5 HOH A 149 549 145 HOH HOH . 
F 5 HOH A 150 550 115 HOH HOH . 
F 5 HOH A 151 551 178 HOH HOH . 
F 5 HOH A 152 552 171 HOH HOH . 
F 5 HOH A 153 553 143 HOH HOH . 
F 5 HOH A 154 554 182 HOH HOH . 
F 5 HOH A 155 555 172 HOH HOH . 
F 5 HOH A 156 556 100 HOH HOH . 
F 5 HOH A 157 557 92 HOH HOH . 
F 5 HOH A 158 558 42 HOH HOH . 
F 5 HOH A 159 559 12 HOH HOH . 
F 5 HOH A 160 560 130 HOH HOH . 
F 5 HOH A 161 561 68 HOH HOH . 
F 5 HOH A 162 562 166 HOH HOH . 
F 5 HOH A 163 563 54 HOH HOH . 
F 5 HOH A 164 564 144 HOH HOH . 
F 5 HOH A 165 565 89 HOH HOH . 
F 5 HOH A 166 566 81 HOH HOH . 
F 5 HOH A 167 567 184 HOH HOH . 
F 5 HOH A 168 568 153 HOH HOH . 
F 5 HOH A 169 569 73 HOH HOH . 
F 5 HOH A 170 570 50 HOH HOH . 
F 5 HOH A 171 571 62 HOH HOH . 
F 5 HOH A 172 572 121 HOH HOH . 
F 5 HOH A 173 573 59 HOH HOH . 
F 5 HOH A 174 574 44 HOH HOH . 
F 5 HOH A 175 575 24 HOH HOH . 
F 5 HOH A 176 576 105 HOH HOH . 
F 5 HOH A 177 577 152 HOH HOH . 
F 5 HOH A 178 578 177 HOH HOH . 
F 5 HOH A 179 579 47 HOH HOH . 
F 5 HOH A 180 580 157 HOH HOH . 
F 5 HOH A 181 581 163 HOH HOH . 
F 5 HOH A 182 582 79 HOH HOH . 
F 5 HOH A 183 583 119 HOH HOH . 
F 5 HOH A 184 584 27 HOH HOH . 
F 5 HOH A 185 585 139 HOH HOH . 
F 5 HOH A 186 586 210 HOH HOH . 
F 5 HOH A 187 587 98 HOH HOH . 
F 5 HOH A 188 588 193 HOH HOH . 
F 5 HOH A 189 589 56 HOH HOH . 
F 5 HOH A 190 590 37 HOH HOH . 
F 5 HOH A 191 591 91 HOH HOH . 
F 5 HOH A 192 592 205 HOH HOH . 
F 5 HOH A 193 593 191 HOH HOH . 
F 5 HOH A 194 594 186 HOH HOH . 
F 5 HOH A 195 595 208 HOH HOH . 
F 5 HOH A 196 596 136 HOH HOH . 
F 5 HOH A 197 597 76 HOH HOH . 
F 5 HOH A 198 598 185 HOH HOH . 
F 5 HOH A 199 599 150 HOH HOH . 
F 5 HOH A 200 600 204 HOH HOH . 
F 5 HOH A 201 601 209 HOH HOH . 
F 5 HOH A 202 602 151 HOH HOH . 
F 5 HOH A 203 603 97 HOH HOH . 
F 5 HOH A 204 604 192 HOH HOH . 
F 5 HOH A 205 605 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 -18.34 -11.722 14.481 1 31.32 ? C TRS 303 A 1 
HETATM 2 C C1 TRS . . . D 3 -16.84 -11.3 14.725 1 34.37 ? C1 TRS 303 A 1 
HETATM 3 C C2 TRS . . . D 3 -18.739 -10.612 15.368 1 29.2 ? C2 TRS 303 A 1 
HETATM 4 C C3 TRS . . . D 3 -18.607 -13.153 15.071 1 39.53 ? C3 TRS 303 A 1 
HETATM 5 N N TRS . . . D 3 -18.461 -11.644 13.078 1 15.99 ? N TRS 303 A 1 
HETATM 6 O O1 TRS . . . D 3 -15.946 -10.878 13.677 1 32.74 ? O1 TRS 303 A 1 
HETATM 7 O O2 TRS . . . D 3 -19.054 -11.079 16.629 1 20.89 ? O2 TRS 303 A 1 
HETATM 8 O O3 TRS . . . D 3 -19.26 -14.096 14.267 1 39.93 ? O3 TRS 303 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#