data_6PE0 # _model_server_result.job_id 7Z4htaGM_WxTrO3e2st2Ew _model_server_result.datetime_utc '2025-07-06 21:28:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pe0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 6PE0 # _exptl.entry_id 6PE0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PE0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 133 A THR 161 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 H O3G ATP . A ATP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 H O2B ATP . A ATP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 H O3B ATP . A ATP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc5 C OG1 THR 133 B THR 161 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc6 J O1G ATP . B ATP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 J O1B ATP . B ATP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 J O2B ATP . B ATP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc9 D OG1 THR 133 C THR 161 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc10 L O1G ATP . C ATP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 L O2B ATP . C ATP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc12 E OG1 THR 133 D THR 161 1_555 O MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 N O3G ATP . D ATP 501 1_555 O MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc14 N O2B ATP . D ATP 501 1_555 O MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc15 F OG1 THR 133 E THR 161 1_555 Q MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 F OD2 ASP 185 E ASP 213 1_555 Q MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc17 P O2B ATP . E ATP 501 1_555 Q MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6PE0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 501 501 ATP ATP . I 4 MG A 1 502 601 MG MG . J 3 ATP B 1 501 501 ATP ATP . K 4 MG B 1 502 601 MG MG . L 3 ATP C 1 501 501 ATP ATP . M 4 MG C 1 502 601 MG MG . N 3 ATP D 1 501 501 ATP ATP . O 4 MG D 1 502 601 MG MG . P 3 ATP E 1 501 501 ATP ATP . Q 4 MG E 1 502 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 3 143.151 157.141 151.3 1 53.25 ? PG ATP 501 D 1 HETATM 2 O O1G ATP . . . N 3 143.411 157.781 149.96 1 53.25 ? O1G ATP 501 D 1 HETATM 3 O O2G ATP . . . N 3 144.126 156.054 151.673 1 53.25 ? O2G ATP 501 D 1 HETATM 4 O O3G ATP . . . N 3 141.704 156.809 151.56 1 53.25 ? O3G ATP 501 D 1 HETATM 5 P PB ATP . . . N 3 142.777 159.749 152.111 1 53.25 ? PB ATP 501 D 1 HETATM 6 O O1B ATP . . . N 3 143.825 160.7 151.593 1 53.25 ? O1B ATP 501 D 1 HETATM 7 O O2B ATP . . . N 3 141.499 159.533 151.339 1 53.25 ? O2B ATP 501 D 1 HETATM 8 O O3B ATP . . . N 3 143.46 158.317 152.347 1 53.25 ? O3B ATP 501 D 1 HETATM 9 P PA ATP . . . N 3 141.254 161.299 153.816 1 53.25 ? PA ATP 501 D 1 HETATM 10 O O1A ATP . . . N 3 139.965 160.757 153.258 1 53.25 ? O1A ATP 501 D 1 HETATM 11 O O2A ATP . . . N 3 141.787 162.625 153.342 1 53.25 ? O2A ATP 501 D 1 HETATM 12 O O3A ATP . . . N 3 142.394 160.194 153.603 1 53.25 ? O3A ATP 501 D 1 HETATM 13 O O5' ATP . . . N 3 141.09 161.355 155.409 1 53.25 ? O5' ATP 501 D 1 HETATM 14 C C5' ATP . . . N 3 139.966 162.039 155.942 1 53.25 ? C5' ATP 501 D 1 HETATM 15 C C4' ATP . . . N 3 140.096 162.203 157.446 1 53.25 ? C4' ATP 501 D 1 HETATM 16 O O4' ATP . . . N 3 141.369 162.773 157.75 1 53.25 ? O4' ATP 501 D 1 HETATM 17 C C3' ATP . . . N 3 139.021 163.132 157.973 1 53.25 ? C3' ATP 501 D 1 HETATM 18 O O3' ATP . . . N 3 138.368 162.554 159.107 1 53.25 ? O3' ATP 501 D 1 HETATM 19 C C2' ATP . . . N 3 139.751 164.405 158.338 1 53.25 ? C2' ATP 501 D 1 HETATM 20 O O2' ATP . . . N 3 139.315 164.91 159.603 1 53.25 ? O2' ATP 501 D 1 HETATM 21 C C1' ATP . . . N 3 141.234 164.052 158.368 1 53.25 ? C1' ATP 501 D 1 HETATM 22 N N9 ATP . . . N 3 142.073 165.024 157.623 1 53.25 ? N9 ATP 501 D 1 HETATM 23 C C8 ATP . . . N 3 143.061 164.685 156.775 1 53.25 ? C8 ATP 501 D 1 HETATM 24 N N7 ATP . . . N 3 143.654 165.79 156.257 1 53.25 ? N7 ATP 501 D 1 HETATM 25 C C5 ATP . . . N 3 143.044 166.862 156.784 1 53.25 ? C5 ATP 501 D 1 HETATM 26 C C6 ATP . . . N 3 143.173 168.326 156.668 1 53.25 ? C6 ATP 501 D 1 HETATM 27 N N6 ATP . . . N 3 144.102 168.876 155.858 1 53.25 ? N6 ATP 501 D 1 HETATM 28 N N1 ATP . . . N 3 142.336 169.095 157.393 1 53.25 ? N1 ATP 501 D 1 HETATM 29 C C2 ATP . . . N 3 141.404 168.564 158.205 1 53.25 ? C2 ATP 501 D 1 HETATM 30 N N3 ATP . . . N 3 141.235 167.239 158.356 1 53.25 ? N3 ATP 501 D 1 HETATM 31 C C4 ATP . . . N 3 142.013 166.355 157.694 1 53.25 ? C4 ATP 501 D 1 HETATM 32 H "H5'1" ATP . . . N 3 139.894 163.022 155.477 1 53.25 ? "H5'1" ATP 501 D 1 HETATM 33 H "H5'2" ATP . . . N 3 139.058 161.483 155.706 1 53.25 ? "H5'2" ATP 501 D 1 HETATM 34 H H4' ATP . . . N 3 139.989 161.224 157.929 1 53.25 ? H4' ATP 501 D 1 HETATM 35 H H3' ATP . . . N 3 138.296 163.346 157.177 1 53.25 ? H3' ATP 501 D 1 HETATM 36 H HO3' ATP . . . N 3 137.579 163.07 159.325 1 53.25 ? HO3' ATP 501 D 1 HETATM 37 H H2' ATP . . . N 3 139.552 165.136 157.55 1 53.25 ? H2' ATP 501 D 1 HETATM 38 H HO2' ATP . . . N 3 138.411 165.241 159.522 1 53.25 ? HO2' ATP 501 D 1 HETATM 39 H H1' ATP . . . N 3 141.566 164.001 159.412 1 53.25 ? H1' ATP 501 D 1 HETATM 40 H H8 ATP . . . N 3 143.343 163.669 156.534 1 53.25 ? H8 ATP 501 D 1 HETATM 41 H HN61 ATP . . . N 3 144.174 169.879 155.793 1 53.25 ? HN61 ATP 501 D 1 HETATM 42 H HN62 ATP . . . N 3 144.72 168.285 155.324 1 53.25 ? HN62 ATP 501 D 1 HETATM 43 H H2 ATP . . . N 3 140.762 169.234 158.761 1 53.25 ? H2 ATP 501 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #