data_6PE3 # _model_server_result.job_id oBR8JUjX9ydOo-wbQGoIcQ _model_server_result.datetime_utc '2024-12-18 14:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pe3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6PE3 # _exptl.entry_id 6PE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PE3 _cell.length_a 106.841 _cell.length_b 106.841 _cell.length_c 182.556 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6PE3 _atom_sites.fract_transf_matrix[1][1] 0.00936 _atom_sites.fract_transf_matrix[1][2] 0.005404 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 500 500 ATP ATP . C 3 HOH A 1 601 85 HOH HOH . C 3 HOH A 2 602 136 HOH HOH . C 3 HOH A 3 603 24 HOH HOH . C 3 HOH A 4 604 101 HOH HOH . C 3 HOH A 5 605 82 HOH HOH . C 3 HOH A 6 606 128 HOH HOH . C 3 HOH A 7 607 96 HOH HOH . C 3 HOH A 8 608 79 HOH HOH . C 3 HOH A 9 609 41 HOH HOH . C 3 HOH A 10 610 127 HOH HOH . C 3 HOH A 11 611 125 HOH HOH . C 3 HOH A 12 612 90 HOH HOH . C 3 HOH A 13 613 98 HOH HOH . C 3 HOH A 14 614 110 HOH HOH . C 3 HOH A 15 615 19 HOH HOH . C 3 HOH A 16 616 62 HOH HOH . C 3 HOH A 17 617 10 HOH HOH . C 3 HOH A 18 618 4 HOH HOH . C 3 HOH A 19 619 50 HOH HOH . C 3 HOH A 20 620 71 HOH HOH . C 3 HOH A 21 621 155 HOH HOH . C 3 HOH A 22 622 72 HOH HOH . C 3 HOH A 23 623 43 HOH HOH . C 3 HOH A 24 624 144 HOH HOH . C 3 HOH A 25 625 78 HOH HOH . C 3 HOH A 26 626 97 HOH HOH . C 3 HOH A 27 627 108 HOH HOH . C 3 HOH A 28 628 102 HOH HOH . C 3 HOH A 29 629 132 HOH HOH . C 3 HOH A 30 630 58 HOH HOH . C 3 HOH A 31 631 6 HOH HOH . C 3 HOH A 32 632 18 HOH HOH . C 3 HOH A 33 633 143 HOH HOH . C 3 HOH A 34 634 129 HOH HOH . C 3 HOH A 35 635 60 HOH HOH . C 3 HOH A 36 636 119 HOH HOH . C 3 HOH A 37 637 104 HOH HOH . C 3 HOH A 38 638 148 HOH HOH . C 3 HOH A 39 639 7 HOH HOH . C 3 HOH A 40 640 164 HOH HOH . C 3 HOH A 41 641 77 HOH HOH . C 3 HOH A 42 642 123 HOH HOH . C 3 HOH A 43 643 84 HOH HOH . C 3 HOH A 44 644 169 HOH HOH . C 3 HOH A 45 645 9 HOH HOH . C 3 HOH A 46 646 81 HOH HOH . C 3 HOH A 47 647 3 HOH HOH . C 3 HOH A 48 648 137 HOH HOH . C 3 HOH A 49 649 55 HOH HOH . C 3 HOH A 50 650 13 HOH HOH . C 3 HOH A 51 651 8 HOH HOH . C 3 HOH A 52 652 15 HOH HOH . C 3 HOH A 53 653 157 HOH HOH . C 3 HOH A 54 654 70 HOH HOH . C 3 HOH A 55 655 109 HOH HOH . C 3 HOH A 56 656 14 HOH HOH . C 3 HOH A 57 657 47 HOH HOH . C 3 HOH A 58 658 80 HOH HOH . C 3 HOH A 59 659 167 HOH HOH . C 3 HOH A 60 660 121 HOH HOH . C 3 HOH A 61 661 45 HOH HOH . C 3 HOH A 62 662 112 HOH HOH . C 3 HOH A 63 663 11 HOH HOH . C 3 HOH A 64 664 142 HOH HOH . C 3 HOH A 65 665 100 HOH HOH . C 3 HOH A 66 666 94 HOH HOH . C 3 HOH A 67 667 166 HOH HOH . C 3 HOH A 68 668 52 HOH HOH . C 3 HOH A 69 669 31 HOH HOH . C 3 HOH A 70 670 39 HOH HOH . C 3 HOH A 71 671 140 HOH HOH . C 3 HOH A 72 672 44 HOH HOH . C 3 HOH A 73 673 63 HOH HOH . C 3 HOH A 74 674 162 HOH HOH . C 3 HOH A 75 675 131 HOH HOH . C 3 HOH A 76 676 93 HOH HOH . C 3 HOH A 77 677 73 HOH HOH . C 3 HOH A 78 678 86 HOH HOH . C 3 HOH A 79 679 118 HOH HOH . C 3 HOH A 80 680 2 HOH HOH . C 3 HOH A 81 681 170 HOH HOH . C 3 HOH A 82 682 61 HOH HOH . C 3 HOH A 83 683 5 HOH HOH . C 3 HOH A 84 684 95 HOH HOH . C 3 HOH A 85 685 133 HOH HOH . C 3 HOH A 86 686 171 HOH HOH . C 3 HOH A 87 687 89 HOH HOH . C 3 HOH A 88 688 28 HOH HOH . C 3 HOH A 89 689 49 HOH HOH . C 3 HOH A 90 690 25 HOH HOH . C 3 HOH A 91 691 146 HOH HOH . C 3 HOH A 92 692 139 HOH HOH . C 3 HOH A 93 693 30 HOH HOH . C 3 HOH A 94 694 17 HOH HOH . C 3 HOH A 95 695 161 HOH HOH . C 3 HOH A 96 696 113 HOH HOH . C 3 HOH A 97 697 67 HOH HOH . C 3 HOH A 98 698 20 HOH HOH . C 3 HOH A 99 699 54 HOH HOH . C 3 HOH A 100 700 26 HOH HOH . C 3 HOH A 101 701 59 HOH HOH . C 3 HOH A 102 702 35 HOH HOH . C 3 HOH A 103 703 38 HOH HOH . C 3 HOH A 104 704 87 HOH HOH . C 3 HOH A 105 705 111 HOH HOH . C 3 HOH A 106 706 122 HOH HOH . C 3 HOH A 107 707 32 HOH HOH . C 3 HOH A 108 708 23 HOH HOH . C 3 HOH A 109 709 65 HOH HOH . C 3 HOH A 110 710 172 HOH HOH . C 3 HOH A 111 711 151 HOH HOH . C 3 HOH A 112 712 16 HOH HOH . C 3 HOH A 113 713 120 HOH HOH . C 3 HOH A 114 714 53 HOH HOH . C 3 HOH A 115 715 22 HOH HOH . C 3 HOH A 116 716 40 HOH HOH . C 3 HOH A 117 717 168 HOH HOH . C 3 HOH A 118 718 51 HOH HOH . C 3 HOH A 119 719 75 HOH HOH . C 3 HOH A 120 720 69 HOH HOH . C 3 HOH A 121 721 42 HOH HOH . C 3 HOH A 122 722 57 HOH HOH . C 3 HOH A 123 723 116 HOH HOH . C 3 HOH A 124 724 149 HOH HOH . C 3 HOH A 125 725 34 HOH HOH . C 3 HOH A 126 726 74 HOH HOH . C 3 HOH A 127 727 114 HOH HOH . C 3 HOH A 128 728 117 HOH HOH . C 3 HOH A 129 729 99 HOH HOH . C 3 HOH A 130 730 124 HOH HOH . C 3 HOH A 131 731 37 HOH HOH . C 3 HOH A 132 732 91 HOH HOH . C 3 HOH A 133 733 29 HOH HOH . C 3 HOH A 134 734 134 HOH HOH . C 3 HOH A 135 735 135 HOH HOH . C 3 HOH A 136 736 105 HOH HOH . C 3 HOH A 137 737 115 HOH HOH . C 3 HOH A 138 738 154 HOH HOH . C 3 HOH A 139 739 12 HOH HOH . C 3 HOH A 140 740 156 HOH HOH . C 3 HOH A 141 741 92 HOH HOH . C 3 HOH A 142 742 76 HOH HOH . C 3 HOH A 143 743 107 HOH HOH . C 3 HOH A 144 744 27 HOH HOH . C 3 HOH A 145 745 103 HOH HOH . C 3 HOH A 146 746 36 HOH HOH . C 3 HOH A 147 747 21 HOH HOH . C 3 HOH A 148 748 165 HOH HOH . C 3 HOH A 149 749 150 HOH HOH . C 3 HOH A 150 750 64 HOH HOH . C 3 HOH A 151 751 33 HOH HOH . C 3 HOH A 152 752 48 HOH HOH . C 3 HOH A 153 753 158 HOH HOH . C 3 HOH A 154 754 160 HOH HOH . C 3 HOH A 155 755 66 HOH HOH . C 3 HOH A 156 756 56 HOH HOH . C 3 HOH A 157 757 1 HOH HOH . C 3 HOH A 158 758 68 HOH HOH . C 3 HOH A 159 759 138 HOH HOH . C 3 HOH A 160 760 88 HOH HOH . C 3 HOH A 161 761 163 HOH HOH . C 3 HOH A 162 762 83 HOH HOH . C 3 HOH A 163 763 106 HOH HOH . C 3 HOH A 164 764 152 HOH HOH . C 3 HOH A 165 765 130 HOH HOH . C 3 HOH A 166 766 147 HOH HOH . C 3 HOH A 167 767 46 HOH HOH . C 3 HOH A 168 768 126 HOH HOH . C 3 HOH A 169 769 159 HOH HOH . C 3 HOH A 170 770 153 HOH HOH . C 3 HOH A 171 771 145 HOH HOH . C 3 HOH A 172 772 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 69.623 6.03 23.758 1 100.94 ? PG ATP 500 A 1 HETATM 2 O O1G ATP . . . B 2 69.919 5.421 25.103 1 102.11 ? O1G ATP 500 A 1 HETATM 3 O O2G ATP . . . B 2 70.734 5.767 22.751 1 104.81 ? O2G ATP 500 A 1 HETATM 4 O O3G ATP . . . B 2 69.083 7.447 23.82 1 95.07 ? O3G ATP 500 A 1 HETATM 5 P PB ATP . . . B 2 68.348 4.215 21.964 1 64.91 ? PB ATP 500 A 1 HETATM 6 O O1B ATP . . . B 2 66.926 3.743 21.87 1 74.94 ? O1B ATP 500 A 1 HETATM 7 O O2B ATP . . . B 2 69.03 4.79 20.764 1 70.77 ? O2B ATP 500 A 1 HETATM 8 O O3B ATP . . . B 2 68.332 5.238 23.206 1 88.97 ? O3B ATP 500 A 1 HETATM 9 P PA ATP . . . B 2 68.936 1.485 22.689 1 67.46 ? PA ATP 500 A 1 HETATM 10 O O1A ATP . . . B 2 67.473 1.168 22.888 1 62.58 ? O1A ATP 500 A 1 HETATM 11 O O2A ATP . . . B 2 69.867 1.016 23.753 1 73.76 ? O2A ATP 500 A 1 HETATM 12 O O3A ATP . . . B 2 69.286 3.062 22.579 1 72.39 ? O3A ATP 500 A 1 HETATM 13 O O5' ATP . . . B 2 69.463 1.04 21.238 1 62.5 ? O5' ATP 500 A 1 HETATM 14 C C5' ATP . . . B 2 70.641 1.583 20.61 1 60.2 ? C5' ATP 500 A 1 HETATM 15 C C4' ATP . . . B 2 70.71 1.099 19.147 1 67.58 ? C4' ATP 500 A 1 HETATM 16 O O4' ATP . . . B 2 70.963 -0.319 19.097 1 63.77 ? O4' ATP 500 A 1 HETATM 17 C C3' ATP . . . B 2 69.402 1.313 18.38 1 61.03 ? C3' ATP 500 A 1 HETATM 18 O O3' ATP . . . B 2 69.74 1.585 17.033 1 58.24 ? O3' ATP 500 A 1 HETATM 19 C C2' ATP . . . B 2 68.703 -0.025 18.487 1 57.78 ? C2' ATP 500 A 1 HETATM 20 O O2' ATP . . . B 2 67.739 -0.292 17.473 1 60.73 ? O2' ATP 500 A 1 HETATM 21 C C1' ATP . . . B 2 69.855 -1.018 18.515 1 60.38 ? C1' ATP 500 A 1 HETATM 22 N N9 ATP . . . B 2 69.454 -2.162 19.349 1 64.06 ? N9 ATP 500 A 1 HETATM 23 C C8 ATP . . . B 2 69.245 -2.137 20.677 1 65.64 ? C8 ATP 500 A 1 HETATM 24 N N7 ATP . . . B 2 68.845 -3.339 21.141 1 65.8 ? N7 ATP 500 A 1 HETATM 25 C C5 ATP . . . B 2 68.789 -4.166 20.092 1 67.73 ? C5 ATP 500 A 1 HETATM 26 C C6 ATP . . . B 2 68.444 -5.59 19.871 1 66.56 ? C6 ATP 500 A 1 HETATM 27 N N6 ATP . . . B 2 68.075 -6.38 20.903 1 62 ? N6 ATP 500 A 1 HETATM 28 N N1 ATP . . . B 2 68.514 -6.075 18.603 1 69.51 ? N1 ATP 500 A 1 HETATM 29 C C2 ATP . . . B 2 68.879 -5.305 17.561 1 68.67 ? C2 ATP 500 A 1 HETATM 30 N N3 ATP . . . B 2 69.203 -4 17.702 1 72.58 ? N3 ATP 500 A 1 HETATM 31 C C4 ATP . . . B 2 69.184 -3.385 18.91 1 67.44 ? C4 ATP 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #