data_6PE6 # _model_server_result.job_id akIzIR8YFMIsNatwu_macQ _model_server_result.datetime_utc '2024-10-11 19:26:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pe6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6PE6 # _exptl.entry_id 6PE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{4-[(4-cyclopropylphenyl)acetyl]piperazin-1-yl}pyridazine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PE6 _cell.length_a 97.8 _cell.length_b 97.8 _cell.length_c 69.284 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.094667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 C O1B ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 D MG MG . A MG 403 1_555 E O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 D MG MG . A MG 403 1_555 E O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 D MG MG . A MG 403 1_555 E O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc6 D MG MG . A MG 403 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'C20 H21 N5 O' _chem_comp.formula_weight 347.414 _chem_comp.id ODG _chem_comp.mon_nstd_flag . _chem_comp.name 6-{4-[(4-cyclopropylphenyl)acetyl]piperazin-1-yl}pyridazine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N19 C18 ODG trip 287 n n C18 C17 ODG sing 288 n n C17 C20 ODG sing 289 n y C17 N16 ODG doub 290 n y C20 C21 ODG doub 291 n y N16 N15 ODG sing 292 n y C21 C14 ODG sing 293 n y N15 C14 ODG doub 294 n y C14 N13 ODG sing 295 n n N13 C12 ODG sing 296 n n N13 C02 ODG sing 297 n n C12 C11 ODG sing 298 n n C02 C01 ODG sing 299 n n C11 N10 ODG sing 300 n n C01 N10 ODG sing 301 n n N10 C09 ODG sing 302 n n C09 C08 ODG sing 303 n n C09 O24 ODG doub 304 n n C08 C07 ODG sing 305 n n C25 C07 ODG doub 306 n y C25 C26 ODG sing 307 n y C07 C06 ODG sing 308 n y C26 C04 ODG doub 309 n y C06 C05 ODG doub 310 n y C04 C05 ODG sing 311 n y C04 C22 ODG sing 312 n n C22 C23 ODG sing 313 n n C22 C24 ODG sing 314 n n C23 C24 ODG sing 315 n n C20 H1 ODG sing 316 n n C21 H2 ODG sing 317 n n C22 H3 ODG sing 318 n n C24 H4 ODG sing 319 n n C24 H5 ODG sing 320 n n C26 H6 ODG sing 321 n n C01 H7 ODG sing 322 n n C01 H8 ODG sing 323 n n C02 H9 ODG sing 324 n n C02 H10 ODG sing 325 n n C05 H11 ODG sing 326 n n C06 H12 ODG sing 327 n n C08 H13 ODG sing 328 n n C08 H14 ODG sing 329 n n C11 H15 ODG sing 330 n n C11 H16 ODG sing 331 n n C12 H17 ODG sing 332 n n C12 H18 ODG sing 333 n n C23 H19 ODG sing 334 n n C23 H20 ODG sing 335 n n C25 H21 ODG sing 336 n n # _atom_sites.entry_id 6PE6 _atom_sites.fract_transf_matrix[1][1] 0.010225 _atom_sites.fract_transf_matrix[1][2] 0.005903 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ODG A 1 401 1 ODG LIG . C 3 ANP A 1 402 501 ANP ANP . D 4 MG A 1 403 1 MG MG . E 5 HOH A 1 501 240 HOH HOH . E 5 HOH A 2 502 179 HOH HOH . E 5 HOH A 3 503 54 HOH HOH . E 5 HOH A 4 504 115 HOH HOH . E 5 HOH A 5 505 19 HOH HOH . E 5 HOH A 6 506 98 HOH HOH . E 5 HOH A 7 507 166 HOH HOH . E 5 HOH A 8 508 110 HOH HOH . E 5 HOH A 9 509 208 HOH HOH . E 5 HOH A 10 510 207 HOH HOH . E 5 HOH A 11 511 134 HOH HOH . E 5 HOH A 12 512 70 HOH HOH . E 5 HOH A 13 513 228 HOH HOH . E 5 HOH A 14 514 72 HOH HOH . E 5 HOH A 15 515 13 HOH HOH . E 5 HOH A 16 516 44 HOH HOH . E 5 HOH A 17 517 233 HOH HOH . E 5 HOH A 18 518 229 HOH HOH . E 5 HOH A 19 519 39 HOH HOH . E 5 HOH A 20 520 239 HOH HOH . E 5 HOH A 21 521 73 HOH HOH . E 5 HOH A 22 522 32 HOH HOH . E 5 HOH A 23 523 200 HOH HOH . E 5 HOH A 24 524 15 HOH HOH . E 5 HOH A 25 525 57 HOH HOH . E 5 HOH A 26 526 43 HOH HOH . E 5 HOH A 27 527 78 HOH HOH . E 5 HOH A 28 528 46 HOH HOH . E 5 HOH A 29 529 59 HOH HOH . E 5 HOH A 30 530 80 HOH HOH . E 5 HOH A 31 531 136 HOH HOH . E 5 HOH A 32 532 132 HOH HOH . E 5 HOH A 33 533 63 HOH HOH . E 5 HOH A 34 534 50 HOH HOH . E 5 HOH A 35 535 4 HOH HOH . E 5 HOH A 36 536 129 HOH HOH . E 5 HOH A 37 537 171 HOH HOH . E 5 HOH A 38 538 41 HOH HOH . E 5 HOH A 39 539 26 HOH HOH . E 5 HOH A 40 540 74 HOH HOH . E 5 HOH A 41 541 148 HOH HOH . E 5 HOH A 42 542 8 HOH HOH . E 5 HOH A 43 543 62 HOH HOH . E 5 HOH A 44 544 106 HOH HOH . E 5 HOH A 45 545 56 HOH HOH . E 5 HOH A 46 546 5 HOH HOH . E 5 HOH A 47 547 31 HOH HOH . E 5 HOH A 48 548 222 HOH HOH . E 5 HOH A 49 549 84 HOH HOH . E 5 HOH A 50 550 14 HOH HOH . E 5 HOH A 51 551 191 HOH HOH . E 5 HOH A 52 552 205 HOH HOH . E 5 HOH A 53 553 6 HOH HOH . E 5 HOH A 54 554 123 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 85 HOH HOH . E 5 HOH A 57 557 11 HOH HOH . E 5 HOH A 58 558 97 HOH HOH . E 5 HOH A 59 559 93 HOH HOH . E 5 HOH A 60 560 7 HOH HOH . E 5 HOH A 61 561 102 HOH HOH . E 5 HOH A 62 562 69 HOH HOH . E 5 HOH A 63 563 10 HOH HOH . E 5 HOH A 64 564 45 HOH HOH . E 5 HOH A 65 565 20 HOH HOH . E 5 HOH A 66 566 201 HOH HOH . E 5 HOH A 67 567 22 HOH HOH . E 5 HOH A 68 568 112 HOH HOH . E 5 HOH A 69 569 231 HOH HOH . E 5 HOH A 70 570 145 HOH HOH . E 5 HOH A 71 571 76 HOH HOH . E 5 HOH A 72 572 111 HOH HOH . E 5 HOH A 73 573 232 HOH HOH . E 5 HOH A 74 574 88 HOH HOH . E 5 HOH A 75 575 92 HOH HOH . E 5 HOH A 76 576 40 HOH HOH . E 5 HOH A 77 577 177 HOH HOH . E 5 HOH A 78 578 67 HOH HOH . E 5 HOH A 79 579 36 HOH HOH . E 5 HOH A 80 580 198 HOH HOH . E 5 HOH A 81 581 25 HOH HOH . E 5 HOH A 82 582 141 HOH HOH . E 5 HOH A 83 583 2 HOH HOH . E 5 HOH A 84 584 100 HOH HOH . E 5 HOH A 85 585 21 HOH HOH . E 5 HOH A 86 586 12 HOH HOH . E 5 HOH A 87 587 206 HOH HOH . E 5 HOH A 88 588 18 HOH HOH . E 5 HOH A 89 589 245 HOH HOH . E 5 HOH A 90 590 75 HOH HOH . E 5 HOH A 91 591 186 HOH HOH . E 5 HOH A 92 592 94 HOH HOH . E 5 HOH A 93 593 65 HOH HOH . E 5 HOH A 94 594 27 HOH HOH . E 5 HOH A 95 595 23 HOH HOH . E 5 HOH A 96 596 211 HOH HOH . E 5 HOH A 97 597 135 HOH HOH . E 5 HOH A 98 598 237 HOH HOH . E 5 HOH A 99 599 42 HOH HOH . E 5 HOH A 100 600 160 HOH HOH . E 5 HOH A 101 601 178 HOH HOH . E 5 HOH A 102 602 215 HOH HOH . E 5 HOH A 103 603 52 HOH HOH . E 5 HOH A 104 604 48 HOH HOH . E 5 HOH A 105 605 241 HOH HOH . E 5 HOH A 106 606 246 HOH HOH . E 5 HOH A 107 607 216 HOH HOH . E 5 HOH A 108 608 16 HOH HOH . E 5 HOH A 109 609 66 HOH HOH . E 5 HOH A 110 610 224 HOH HOH . E 5 HOH A 111 611 187 HOH HOH . E 5 HOH A 112 612 64 HOH HOH . E 5 HOH A 113 613 227 HOH HOH . E 5 HOH A 114 614 190 HOH HOH . E 5 HOH A 115 615 95 HOH HOH . E 5 HOH A 116 616 51 HOH HOH . E 5 HOH A 117 617 71 HOH HOH . E 5 HOH A 118 618 34 HOH HOH . E 5 HOH A 119 619 194 HOH HOH . E 5 HOH A 120 620 47 HOH HOH . E 5 HOH A 121 621 152 HOH HOH . E 5 HOH A 122 622 140 HOH HOH . E 5 HOH A 123 623 226 HOH HOH . E 5 HOH A 124 624 155 HOH HOH . E 5 HOH A 125 625 230 HOH HOH . E 5 HOH A 126 626 35 HOH HOH . E 5 HOH A 127 627 161 HOH HOH . E 5 HOH A 128 628 242 HOH HOH . E 5 HOH A 129 629 49 HOH HOH . E 5 HOH A 130 630 223 HOH HOH . E 5 HOH A 131 631 38 HOH HOH . E 5 HOH A 132 632 139 HOH HOH . E 5 HOH A 133 633 103 HOH HOH . E 5 HOH A 134 634 79 HOH HOH . E 5 HOH A 135 635 89 HOH HOH . E 5 HOH A 136 636 28 HOH HOH . E 5 HOH A 137 637 82 HOH HOH . E 5 HOH A 138 638 234 HOH HOH . E 5 HOH A 139 639 60 HOH HOH . E 5 HOH A 140 640 218 HOH HOH . E 5 HOH A 141 641 37 HOH HOH . E 5 HOH A 142 642 29 HOH HOH . E 5 HOH A 143 643 33 HOH HOH . E 5 HOH A 144 644 147 HOH HOH . E 5 HOH A 145 645 77 HOH HOH . E 5 HOH A 146 646 124 HOH HOH . E 5 HOH A 147 647 53 HOH HOH . E 5 HOH A 148 648 184 HOH HOH . E 5 HOH A 149 649 149 HOH HOH . E 5 HOH A 150 650 189 HOH HOH . E 5 HOH A 151 651 61 HOH HOH . E 5 HOH A 152 652 244 HOH HOH . E 5 HOH A 153 653 118 HOH HOH . E 5 HOH A 154 654 196 HOH HOH . E 5 HOH A 155 655 238 HOH HOH . E 5 HOH A 156 656 221 HOH HOH . E 5 HOH A 157 657 17 HOH HOH . E 5 HOH A 158 658 192 HOH HOH . E 5 HOH A 159 659 213 HOH HOH . E 5 HOH A 160 660 214 HOH HOH . E 5 HOH A 161 661 151 HOH HOH . E 5 HOH A 162 662 162 HOH HOH . E 5 HOH A 163 663 9 HOH HOH . E 5 HOH A 164 664 197 HOH HOH . E 5 HOH A 165 665 236 HOH HOH . E 5 HOH A 166 666 225 HOH HOH . E 5 HOH A 167 667 220 HOH HOH . E 5 HOH A 168 668 170 HOH HOH . E 5 HOH A 169 669 122 HOH HOH . E 5 HOH A 170 670 243 HOH HOH . E 5 HOH A 171 671 58 HOH HOH . E 5 HOH A 172 672 217 HOH HOH . E 5 HOH A 173 673 235 HOH HOH . E 5 HOH A 174 674 181 HOH HOH . E 5 HOH A 175 675 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 ODG . . . B 2 -35.408 -6.849 -17.872 1 16.1 ? C17 ODG 401 A 1 HETATM 2 C C20 ODG . . . B 2 -34.073 -7.235 -17.687 1 13.73 ? C20 ODG 401 A 1 HETATM 3 C C21 ODG . . . B 2 -33.745 -7.895 -16.476 1 18.07 ? C21 ODG 401 A 1 HETATM 4 C C22 ODG . . . B 2 -31.635 -14.159 -5.59 1 20.31 ? C22 ODG 401 A 1 HETATM 5 C C24 ODG . . . B 2 -32.484 -15.391 -5.267 1 20.67 ? C24 ODG 401 A 1 HETATM 6 C C26 ODG . . . B 2 -31.992 -13.906 -8.07 1 12.42 ? C26 ODG 401 A 1 HETATM 7 C C01 ODG . . . B 2 -35.335 -10.453 -12.733 1 22.71 ? C01 ODG 401 A 1 HETATM 8 C C02 ODG . . . B 2 -35.571 -9.054 -13.282 1 23.05 ? C02 ODG 401 A 1 HETATM 9 C C04 ODG . . . B 2 -31.807 -13.282 -6.833 1 17.42 ? C04 ODG 401 A 1 HETATM 10 C C05 ODG . . . B 2 -31.778 -11.884 -6.737 1 20.35 ? C05 ODG 401 A 1 HETATM 11 C C06 ODG . . . B 2 -31.943 -11.108 -7.882 1 18.41 ? C06 ODG 401 A 1 HETATM 12 C C07 ODG . . . B 2 -32.123 -11.735 -9.109 1 13.55 ? C07 ODG 401 A 1 HETATM 13 C C08 ODG . . . B 2 -32.296 -10.882 -10.37 1 19.19 ? C08 ODG 401 A 1 HETATM 14 C C09 ODG . . . B 2 -33.772 -10.859 -10.796 1 18.34 ? C09 ODG 401 A 1 HETATM 15 C C11 ODG . . . B 2 -32.961 -10.218 -13.076 1 24.83 ? C11 ODG 401 A 1 HETATM 16 C C12 ODG . . . B 2 -33.15 -8.85 -13.722 1 23.13 ? C12 ODG 401 A 1 HETATM 17 C C14 ODG . . . B 2 -34.797 -8.101 -15.57 1 18.36 ? C14 ODG 401 A 1 HETATM 18 C C18 ODG . . . B 2 -35.795 -6.148 -19.161 1 15.24 ? C18 ODG 401 A 1 HETATM 19 C C23 ODG . . . B 2 -30.965 -15.517 -5.38 1 20.31 ? C23 ODG 401 A 1 HETATM 20 C C25 ODG . . . B 2 -32.159 -13.123 -9.211 1 11.81 ? C25 ODG 401 A 1 HETATM 21 N N10 ODG . . . B 2 -34.031 -10.511 -12.182 1 28.77 ? N10 ODG 401 A 1 HETATM 22 N N13 ODG . . . B 2 -34.523 -8.779 -14.32 1 24.37 ? N13 ODG 401 A 1 HETATM 23 N N15 ODG . . . B 2 -36.01 -7.703 -15.826 1 18.46 ? N15 ODG 401 A 1 HETATM 24 N N16 ODG . . . B 2 -36.326 -7.082 -16.971 1 19.68 ? N16 ODG 401 A 1 HETATM 25 N N19 ODG . . . B 2 -36.058 -5.62 -20.123 1 16.29 ? N19 ODG 401 A 1 HETATM 26 O O24 ODG . . . B 2 -34.663 -11.117 -10.056 1 19.71 ? O24 ODG 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #