data_6PE6 # _model_server_result.job_id 6yLax0Y2sMScet75JfD13g _model_server_result.datetime_utc '2024-10-11 19:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pe6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6PE6 # _exptl.entry_id 6PE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PE6 _cell.length_a 97.8 _cell.length_b 97.8 _cell.length_c 69.284 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.094667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 C O1B ANP . A ANP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 D MG MG . A MG 403 1_555 E O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 D MG MG . A MG 403 1_555 E O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 D MG MG . A MG 403 1_555 E O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc6 D MG MG . A MG 403 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6PE6 _atom_sites.fract_transf_matrix[1][1] 0.010225 _atom_sites.fract_transf_matrix[1][2] 0.005903 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ODG A 1 401 1 ODG LIG . C 3 ANP A 1 402 501 ANP ANP . D 4 MG A 1 403 1 MG MG . E 5 HOH A 1 501 240 HOH HOH . E 5 HOH A 2 502 179 HOH HOH . E 5 HOH A 3 503 54 HOH HOH . E 5 HOH A 4 504 115 HOH HOH . E 5 HOH A 5 505 19 HOH HOH . E 5 HOH A 6 506 98 HOH HOH . E 5 HOH A 7 507 166 HOH HOH . E 5 HOH A 8 508 110 HOH HOH . E 5 HOH A 9 509 208 HOH HOH . E 5 HOH A 10 510 207 HOH HOH . E 5 HOH A 11 511 134 HOH HOH . E 5 HOH A 12 512 70 HOH HOH . E 5 HOH A 13 513 228 HOH HOH . E 5 HOH A 14 514 72 HOH HOH . E 5 HOH A 15 515 13 HOH HOH . E 5 HOH A 16 516 44 HOH HOH . E 5 HOH A 17 517 233 HOH HOH . E 5 HOH A 18 518 229 HOH HOH . E 5 HOH A 19 519 39 HOH HOH . E 5 HOH A 20 520 239 HOH HOH . E 5 HOH A 21 521 73 HOH HOH . E 5 HOH A 22 522 32 HOH HOH . E 5 HOH A 23 523 200 HOH HOH . E 5 HOH A 24 524 15 HOH HOH . E 5 HOH A 25 525 57 HOH HOH . E 5 HOH A 26 526 43 HOH HOH . E 5 HOH A 27 527 78 HOH HOH . E 5 HOH A 28 528 46 HOH HOH . E 5 HOH A 29 529 59 HOH HOH . E 5 HOH A 30 530 80 HOH HOH . E 5 HOH A 31 531 136 HOH HOH . E 5 HOH A 32 532 132 HOH HOH . E 5 HOH A 33 533 63 HOH HOH . E 5 HOH A 34 534 50 HOH HOH . E 5 HOH A 35 535 4 HOH HOH . E 5 HOH A 36 536 129 HOH HOH . E 5 HOH A 37 537 171 HOH HOH . E 5 HOH A 38 538 41 HOH HOH . E 5 HOH A 39 539 26 HOH HOH . E 5 HOH A 40 540 74 HOH HOH . E 5 HOH A 41 541 148 HOH HOH . E 5 HOH A 42 542 8 HOH HOH . E 5 HOH A 43 543 62 HOH HOH . E 5 HOH A 44 544 106 HOH HOH . E 5 HOH A 45 545 56 HOH HOH . E 5 HOH A 46 546 5 HOH HOH . E 5 HOH A 47 547 31 HOH HOH . E 5 HOH A 48 548 222 HOH HOH . E 5 HOH A 49 549 84 HOH HOH . E 5 HOH A 50 550 14 HOH HOH . E 5 HOH A 51 551 191 HOH HOH . E 5 HOH A 52 552 205 HOH HOH . E 5 HOH A 53 553 6 HOH HOH . E 5 HOH A 54 554 123 HOH HOH . E 5 HOH A 55 555 55 HOH HOH . E 5 HOH A 56 556 85 HOH HOH . E 5 HOH A 57 557 11 HOH HOH . E 5 HOH A 58 558 97 HOH HOH . E 5 HOH A 59 559 93 HOH HOH . E 5 HOH A 60 560 7 HOH HOH . E 5 HOH A 61 561 102 HOH HOH . E 5 HOH A 62 562 69 HOH HOH . E 5 HOH A 63 563 10 HOH HOH . E 5 HOH A 64 564 45 HOH HOH . E 5 HOH A 65 565 20 HOH HOH . E 5 HOH A 66 566 201 HOH HOH . E 5 HOH A 67 567 22 HOH HOH . E 5 HOH A 68 568 112 HOH HOH . E 5 HOH A 69 569 231 HOH HOH . E 5 HOH A 70 570 145 HOH HOH . E 5 HOH A 71 571 76 HOH HOH . E 5 HOH A 72 572 111 HOH HOH . E 5 HOH A 73 573 232 HOH HOH . E 5 HOH A 74 574 88 HOH HOH . E 5 HOH A 75 575 92 HOH HOH . E 5 HOH A 76 576 40 HOH HOH . E 5 HOH A 77 577 177 HOH HOH . E 5 HOH A 78 578 67 HOH HOH . E 5 HOH A 79 579 36 HOH HOH . E 5 HOH A 80 580 198 HOH HOH . E 5 HOH A 81 581 25 HOH HOH . E 5 HOH A 82 582 141 HOH HOH . E 5 HOH A 83 583 2 HOH HOH . E 5 HOH A 84 584 100 HOH HOH . E 5 HOH A 85 585 21 HOH HOH . E 5 HOH A 86 586 12 HOH HOH . E 5 HOH A 87 587 206 HOH HOH . E 5 HOH A 88 588 18 HOH HOH . E 5 HOH A 89 589 245 HOH HOH . E 5 HOH A 90 590 75 HOH HOH . E 5 HOH A 91 591 186 HOH HOH . E 5 HOH A 92 592 94 HOH HOH . E 5 HOH A 93 593 65 HOH HOH . E 5 HOH A 94 594 27 HOH HOH . E 5 HOH A 95 595 23 HOH HOH . E 5 HOH A 96 596 211 HOH HOH . E 5 HOH A 97 597 135 HOH HOH . E 5 HOH A 98 598 237 HOH HOH . E 5 HOH A 99 599 42 HOH HOH . E 5 HOH A 100 600 160 HOH HOH . E 5 HOH A 101 601 178 HOH HOH . E 5 HOH A 102 602 215 HOH HOH . E 5 HOH A 103 603 52 HOH HOH . E 5 HOH A 104 604 48 HOH HOH . E 5 HOH A 105 605 241 HOH HOH . E 5 HOH A 106 606 246 HOH HOH . E 5 HOH A 107 607 216 HOH HOH . E 5 HOH A 108 608 16 HOH HOH . E 5 HOH A 109 609 66 HOH HOH . E 5 HOH A 110 610 224 HOH HOH . E 5 HOH A 111 611 187 HOH HOH . E 5 HOH A 112 612 64 HOH HOH . E 5 HOH A 113 613 227 HOH HOH . E 5 HOH A 114 614 190 HOH HOH . E 5 HOH A 115 615 95 HOH HOH . E 5 HOH A 116 616 51 HOH HOH . E 5 HOH A 117 617 71 HOH HOH . E 5 HOH A 118 618 34 HOH HOH . E 5 HOH A 119 619 194 HOH HOH . E 5 HOH A 120 620 47 HOH HOH . E 5 HOH A 121 621 152 HOH HOH . E 5 HOH A 122 622 140 HOH HOH . E 5 HOH A 123 623 226 HOH HOH . E 5 HOH A 124 624 155 HOH HOH . E 5 HOH A 125 625 230 HOH HOH . E 5 HOH A 126 626 35 HOH HOH . E 5 HOH A 127 627 161 HOH HOH . E 5 HOH A 128 628 242 HOH HOH . E 5 HOH A 129 629 49 HOH HOH . E 5 HOH A 130 630 223 HOH HOH . E 5 HOH A 131 631 38 HOH HOH . E 5 HOH A 132 632 139 HOH HOH . E 5 HOH A 133 633 103 HOH HOH . E 5 HOH A 134 634 79 HOH HOH . E 5 HOH A 135 635 89 HOH HOH . E 5 HOH A 136 636 28 HOH HOH . E 5 HOH A 137 637 82 HOH HOH . E 5 HOH A 138 638 234 HOH HOH . E 5 HOH A 139 639 60 HOH HOH . E 5 HOH A 140 640 218 HOH HOH . E 5 HOH A 141 641 37 HOH HOH . E 5 HOH A 142 642 29 HOH HOH . E 5 HOH A 143 643 33 HOH HOH . E 5 HOH A 144 644 147 HOH HOH . E 5 HOH A 145 645 77 HOH HOH . E 5 HOH A 146 646 124 HOH HOH . E 5 HOH A 147 647 53 HOH HOH . E 5 HOH A 148 648 184 HOH HOH . E 5 HOH A 149 649 149 HOH HOH . E 5 HOH A 150 650 189 HOH HOH . E 5 HOH A 151 651 61 HOH HOH . E 5 HOH A 152 652 244 HOH HOH . E 5 HOH A 153 653 118 HOH HOH . E 5 HOH A 154 654 196 HOH HOH . E 5 HOH A 155 655 238 HOH HOH . E 5 HOH A 156 656 221 HOH HOH . E 5 HOH A 157 657 17 HOH HOH . E 5 HOH A 158 658 192 HOH HOH . E 5 HOH A 159 659 213 HOH HOH . E 5 HOH A 160 660 214 HOH HOH . E 5 HOH A 161 661 151 HOH HOH . E 5 HOH A 162 662 162 HOH HOH . E 5 HOH A 163 663 9 HOH HOH . E 5 HOH A 164 664 197 HOH HOH . E 5 HOH A 165 665 236 HOH HOH . E 5 HOH A 166 666 225 HOH HOH . E 5 HOH A 167 667 220 HOH HOH . E 5 HOH A 168 668 170 HOH HOH . E 5 HOH A 169 669 122 HOH HOH . E 5 HOH A 170 670 243 HOH HOH . E 5 HOH A 171 671 58 HOH HOH . E 5 HOH A 172 672 217 HOH HOH . E 5 HOH A 173 673 235 HOH HOH . E 5 HOH A 174 674 181 HOH HOH . E 5 HOH A 175 675 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -28.47 -14.166 -1.817 1 9.74 ? PG ANP 402 A 1 HETATM 2 O O1G ANP . . . C 3 -28.574 -13.278 -3.036 1 13.81 ? O1G ANP 402 A 1 HETATM 3 O O2G ANP . . . C 3 -28.198 -15.617 -2.281 1 12.22 ? O2G ANP 402 A 1 HETATM 4 O O3G ANP . . . C 3 -29.778 -14.098 -0.96 1 11.36 ? O3G ANP 402 A 1 HETATM 5 P PB ANP . . . C 3 -26.886 -13.649 0.659 1 8.53 ? PB ANP 402 A 1 HETATM 6 O O1B ANP . . . C 3 -28.035 -14.312 1.37 1 8.09 ? O1B ANP 402 A 1 HETATM 7 O O2B ANP . . . C 3 -25.565 -14.321 1.049 1 7.26 ? O2B ANP 402 A 1 HETATM 8 N N3B ANP . . . C 3 -27.124 -13.611 -0.977 1 9.85 ? N3B ANP 402 A 1 HETATM 9 P PA ANP . . . C 3 -27.002 -11.42 2.508 1 5.88 ? PA ANP 402 A 1 HETATM 10 O O1A ANP . . . C 3 -26.312 -12.21 3.543 1 5.35 ? O1A ANP 402 A 1 HETATM 11 O O2A ANP . . . C 3 -28.441 -11.001 2.836 1 6.55 ? O2A ANP 402 A 1 HETATM 12 O O3A ANP . . . C 3 -26.978 -12.138 1.09 1 5.79 ? O3A ANP 402 A 1 HETATM 13 O O5' ANP . . . C 3 -26.212 -10.091 2.174 1 5.11 ? O5' ANP 402 A 1 HETATM 14 C C5' ANP . . . C 3 -24.925 -10.144 1.54 1 8.78 ? C5' ANP 402 A 1 HETATM 15 C C4' ANP . . . C 3 -24.418 -8.734 1.406 1 7.97 ? C4' ANP 402 A 1 HETATM 16 O O4' ANP . . . C 3 -24.175 -8.2 2.721 1 8.25 ? O4' ANP 402 A 1 HETATM 17 C C3' ANP . . . C 3 -23.089 -8.609 0.677 1 7.45 ? C3' ANP 402 A 1 HETATM 18 O O3' ANP . . . C 3 -23.322 -8.493 -0.723 1 7.76 ? O3' ANP 402 A 1 HETATM 19 C C2' ANP . . . C 3 -22.498 -7.321 1.27 1 7.81 ? C2' ANP 402 A 1 HETATM 20 O O2' ANP . . . C 3 -22.955 -6.161 0.58 1 8.18 ? O2' ANP 402 A 1 HETATM 21 C C1' ANP . . . C 3 -23.069 -7.31 2.694 1 6.16 ? C1' ANP 402 A 1 HETATM 22 N N9 ANP . . . C 3 -22.175 -7.725 3.773 1 7.74 ? N9 ANP 402 A 1 HETATM 23 C C8 ANP . . . C 3 -22.331 -7.341 5.078 1 10.73 ? C8 ANP 402 A 1 HETATM 24 N N7 ANP . . . C 3 -21.465 -7.881 5.9 1 11.29 ? N7 ANP 402 A 1 HETATM 25 C C5 ANP . . . C 3 -20.691 -8.688 5.082 1 8.88 ? C5 ANP 402 A 1 HETATM 26 C C6 ANP . . . C 3 -19.59 -9.521 5.344 1 13.12 ? C6 ANP 402 A 1 HETATM 27 N N6 ANP . . . C 3 -19.07 -9.693 6.564 1 18.32 ? N6 ANP 402 A 1 HETATM 28 N N1 ANP . . . C 3 -19.05 -10.196 4.3 1 13.28 ? N1 ANP 402 A 1 HETATM 29 C C2 ANP . . . C 3 -19.572 -10.023 3.083 1 10.57 ? C2 ANP 402 A 1 HETATM 30 N N3 ANP . . . C 3 -20.603 -9.255 2.718 1 9.61 ? N3 ANP 402 A 1 HETATM 31 C C4 ANP . . . C 3 -21.12 -8.604 3.766 1 6.88 ? C4 ANP 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #