data_6PEK # _model_server_result.job_id XgZRXjEQIc3Sn5UcZTpMRQ _model_server_result.datetime_utc '2024-10-19 12:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":703}' # _entry.id 6PEK # _exptl.entry_id 6PEK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PEK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N ? 5 O N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 271 A THR 389 1_555 I MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A OD2 ASP 323 A ASP 441 1_555 I MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc3 G O3B ADP . A ADP 701 1_555 H BE BEF . A BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? metalc ? metalc4 G O1B ADP . A ADP 701 1_555 I MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc5 G O2B ADP . A ADP 701 1_555 I MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 H F1 BEF . A BEF 702 1_555 I MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 B OG1 THR 271 B THR 389 1_555 L MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc8 B OD2 ASP 323 B ASP 441 1_555 L MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc9 J O3B ADP . B ADP 701 1_555 K BE BEF . B BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc10 J O1B ADP . B ADP 701 1_555 L MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc11 J O2B ADP . B ADP 701 1_555 L MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 K F1 BEF . B BEF 702 1_555 L MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc13 C OG1 THR 271 C THR 389 1_555 O MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc14 M O3B ADP . C ADP 701 1_555 N BE BEF . C BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? metalc ? metalc15 M O1B ADP . C ADP 701 1_555 O MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc16 M O2B ADP . C ADP 701 1_555 O MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc17 N F1 BEF . C BEF 702 1_555 O MG MG . C MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc18 D OG1 THR 271 D THR 389 1_555 R MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc19 P O3B ADP . D ADP 701 1_555 Q BE BEF . D BEF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.58 ? metalc ? metalc20 P O1B ADP . D ADP 701 1_555 R MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc21 P O2B ADP . D ADP 701 1_555 R MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc22 Q F1 BEF . D BEF 702 1_555 R MG MG . D MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PEK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP A 1 701 711 ADP ADP . H 4 BEF A 1 702 712 BEF BEF . I 5 MG A 1 703 713 MG MG . J 3 ADP B 1 701 711 ADP ADP . K 4 BEF B 1 702 712 BEF BEF . L 5 MG B 1 703 713 MG MG . M 3 ADP C 1 701 711 ADP ADP . N 4 BEF C 1 702 712 BEF BEF . O 5 MG C 1 703 713 MG MG . P 3 ADP D 1 701 711 ADP ADP . Q 4 BEF D 1 702 712 BEF BEF . R 5 MG D 1 703 713 MG MG . S 3 ADP E 1 701 711 ADP ADP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 5 _atom_site.Cartn_x 151.679 _atom_site.Cartn_y 111.893 _atom_site.Cartn_z 134.362 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #