data_6PEL # _model_server_result.job_id NWckk_jFUp440AMhgOSaaQ _model_server_result.datetime_utc '2024-11-12 21:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6PEL # _exptl.entry_id 6PEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.265 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3,7-dimethyloct-6-en-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PEL _cell.length_a 243.412 _cell.length_b 243.412 _cell.length_c 108.44 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 1 NAG 3 n C NAG 2 C 2 NAG D 2 NAG 3 n C BMA 3 C 3 BMA D 3 BMA 3 n C BMA 4 C 4 BMA D 4 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A SG CYS 323 A CYS 323 1_555 F C1 PLM . A PLM 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C10 H20 O' _chem_comp.formula_weight 156.265 _chem_comp.id ODM _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3,7-dimethyloct-6-en-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms citronellol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAK CAJ ODM sing 337 n n CAC CAB ODM doub 338 n n CAC CAF ODM sing 339 n n CAB CAA ODM sing 340 n n CAB CAE ODM sing 341 n n CAF CAG ODM sing 342 n n CAI CAJ ODM sing 343 n n CAI CAH ODM sing 344 n n CAG CAH ODM sing 345 n n CAH CAD ODM sing 346 n n CAA H1 ODM sing 347 n n CAA H2 ODM sing 348 n n CAA H3 ODM sing 349 n n CAE H4 ODM sing 350 n n CAE H5 ODM sing 351 n n CAE H6 ODM sing 352 n n CAC H7 ODM sing 353 n n CAF H8 ODM sing 354 n n CAF H9 ODM sing 355 n n CAG H10 ODM sing 356 n n CAG H11 ODM sing 357 n n CAH H12 ODM sing 358 n n CAD H13 ODM sing 359 n n CAD H14 ODM sing 360 n n CAD H15 ODM sing 361 n n CAI H16 ODM sing 362 n n CAI H17 ODM sing 363 n n CAJ H18 ODM sing 364 n n CAJ H19 ODM sing 365 n n OAK H20 ODM sing 366 n n # _atom_sites.entry_id 6PEL _atom_sites.fract_transf_matrix[1][1] 0.004108 _atom_sites.fract_transf_matrix[1][2] 0.002372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ODM A 1 401 1 ODM COL . E 5 BOG A 1 406 1 BOG BOG . F 6 PLM A 1 407 1 PLM PLY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA ODM . . . D 4 5.978 52.341 33.069 1 197.62 ? CAA ODM 401 A 1 HETATM 2 C CAB ODM . . . D 4 6.742 51.026 33.019 1 196.01 ? CAB ODM 401 A 1 HETATM 3 C CAE ODM . . . D 4 8.276 51.001 33.095 1 204.51 ? CAE ODM 401 A 1 HETATM 4 C CAC ODM . . . D 4 6.042 49.879 32.996 1 180.15 ? CAC ODM 401 A 1 HETATM 5 C CAF ODM . . . D 4 6.881 48.605 33.06 1 161.76 ? CAF ODM 401 A 1 HETATM 6 C CAG ODM . . . D 4 6.017 47.471 33.621 1 149.51 ? CAG ODM 401 A 1 HETATM 7 C CAH ODM . . . D 4 6.922 46.369 34.181 1 134.15 ? CAH ODM 401 A 1 HETATM 8 C CAD ODM . . . D 4 6.326 45.797 35.464 1 124.94 ? CAD ODM 401 A 1 HETATM 9 C CAI ODM . . . D 4 7.059 45.239 33.16 1 120.4 ? CAI ODM 401 A 1 HETATM 10 C CAJ ODM . . . D 4 8.151 44.269 33.617 1 109.25 ? CAJ ODM 401 A 1 HETATM 11 O OAK ODM . . . D 4 8.371 43.294 32.603 1 110.15 ? OAK ODM 401 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #