data_6PF3 # _model_server_result.job_id AVnVkYDX76ZJ4wKlqMRnjA _model_server_result.datetime_utc '2024-11-27 02:14:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6PF3 # _exptl.entry_id 6PF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.836 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-chlorobenzoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 6PF3 _cell.length_a 89.144 _cell.length_b 89.322 _cell.length_c 163.48 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,O 1 1 B,G,H,N 2 1,2 D,K,L,P 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.144 0 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 89.115467 0 163.479998 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H16 Cl N5 O4' _chem_comp.formula_weight 437.836 _chem_comp.id OE7 _chem_comp.mon_nstd_flag . _chem_comp.name '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-chlorobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C21 OE7 doub 237 n n C19 C18 OE7 doub 238 n y C19 C20 OE7 sing 239 n y C21 O3 OE7 sing 240 n n C21 C20 OE7 sing 241 n n C18 C17 OE7 sing 242 n y C20 C15 OE7 doub 243 n y N4 C4 OE7 sing 244 n n C17 CL1 OE7 sing 245 n n C17 C16 OE7 doub 246 n y C4 N1 OE7 doub 247 n n C4 N2 OE7 sing 248 n n N1 C1 OE7 sing 249 n n C15 C16 OE7 sing 250 n y C15 N5 OE7 sing 251 n n N2 C3 OE7 sing 252 n n N5 C14 OE7 sing 253 n n C1 N3 OE7 sing 254 n y C1 C2 OE7 doub 255 n y N3 C6 OE7 sing 256 n y C12 C13 OE7 doub 257 n y C12 C11 OE7 sing 258 n y C3 C2 OE7 sing 259 n n C3 O1 OE7 doub 260 n n C2 C5 OE7 sing 261 n y C14 C11 OE7 sing 262 n n C14 O2 OE7 doub 263 n n C13 C8 OE7 sing 264 n y C6 C5 OE7 doub 265 n y C11 C10 OE7 doub 266 n y C5 C7 OE7 sing 267 n n C8 C7 OE7 sing 268 n n C8 C9 OE7 doub 269 n y C10 C9 OE7 sing 270 n y N2 H1 OE7 sing 271 n n N3 H2 OE7 sing 272 n n O3 H3 OE7 sing 273 n n N4 H4 OE7 sing 274 n n N4 H5 OE7 sing 275 n n N5 H6 OE7 sing 276 n n C6 H7 OE7 sing 277 n n C10 H8 OE7 sing 278 n n C12 H9 OE7 sing 279 n n C13 H10 OE7 sing 280 n n C16 H11 OE7 sing 281 n n C18 H12 OE7 sing 282 n n C19 H13 OE7 sing 283 n n C7 H14 OE7 sing 284 n n C7 H15 OE7 sing 285 n n C9 H16 OE7 sing 286 n n # _atom_sites.entry_id 6PF3 _atom_sites.fract_transf_matrix[1][1] 0.011218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UMP A 1 600 600 UMP UMP . F 3 OE7 A 1 601 601 OE7 TS4 . G 2 UMP B 1 600 600 UMP UMP . H 3 OE7 B 1 601 601 OE7 TS4 . I 2 UMP C 1 600 600 UMP UMP . J 3 OE7 C 1 601 601 OE7 TS4 . K 2 UMP D 1 600 600 UMP UMP . L 3 OE7 D 1 601 601 OE7 TS4 . M 4 HOH A 1 701 45 HOH HOH . M 4 HOH A 2 702 36 HOH HOH . M 4 HOH A 3 703 47 HOH HOH . M 4 HOH A 4 704 15 HOH HOH . M 4 HOH A 5 705 6 HOH HOH . M 4 HOH A 6 706 17 HOH HOH . M 4 HOH A 7 707 32 HOH HOH . M 4 HOH A 8 708 24 HOH HOH . M 4 HOH A 9 709 20 HOH HOH . M 4 HOH A 10 710 43 HOH HOH . M 4 HOH A 11 711 50 HOH HOH . N 4 HOH B 1 701 19 HOH HOH . N 4 HOH B 2 702 8 HOH HOH . N 4 HOH B 3 703 40 HOH HOH . N 4 HOH B 4 704 44 HOH HOH . N 4 HOH B 5 705 23 HOH HOH . N 4 HOH B 6 706 29 HOH HOH . N 4 HOH B 7 707 48 HOH HOH . N 4 HOH B 8 708 14 HOH HOH . N 4 HOH B 9 709 41 HOH HOH . N 4 HOH B 10 710 52 HOH HOH . O 4 HOH C 1 701 13 HOH HOH . O 4 HOH C 2 702 27 HOH HOH . O 4 HOH C 3 703 46 HOH HOH . O 4 HOH C 4 704 9 HOH HOH . O 4 HOH C 5 705 5 HOH HOH . O 4 HOH C 6 706 2 HOH HOH . O 4 HOH C 7 707 38 HOH HOH . O 4 HOH C 8 708 18 HOH HOH . O 4 HOH C 9 709 21 HOH HOH . O 4 HOH C 10 710 37 HOH HOH . O 4 HOH C 11 711 22 HOH HOH . O 4 HOH C 12 712 42 HOH HOH . P 4 HOH D 1 701 12 HOH HOH . P 4 HOH D 2 702 7 HOH HOH . P 4 HOH D 3 703 51 HOH HOH . P 4 HOH D 4 704 11 HOH HOH . P 4 HOH D 5 705 39 HOH HOH . P 4 HOH D 6 706 1 HOH HOH . P 4 HOH D 7 707 10 HOH HOH . P 4 HOH D 8 708 28 HOH HOH . P 4 HOH D 9 709 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OE7 . . . F 3 -3.401 10.251 22.517 1 62.52 ? N1 OE7 601 A 1 HETATM 2 C C1 OE7 . . . F 3 -3.027 9.319 23.473 1 66.99 ? C1 OE7 601 A 1 HETATM 3 O O1 OE7 . . . F 3 -6.158 8.392 24.904 1 62.31 ? O1 OE7 601 A 1 HETATM 4 N N2 OE7 . . . F 3 -5.642 9.846 23.265 1 62.25 ? N2 OE7 601 A 1 HETATM 5 C C2 OE7 . . . F 3 -3.867 8.644 24.319 1 67.03 ? C2 OE7 601 A 1 HETATM 6 O O2 OE7 . . . F 3 -7.507 1.778 25.095 1 66.16 ? O2 OE7 601 A 1 HETATM 7 N N3 OE7 . . . F 3 -1.742 8.914 23.738 1 71.27 ? N3 OE7 601 A 1 HETATM 8 C C3 OE7 . . . F 3 -5.313 8.936 24.2 1 63.8 ? C3 OE7 601 A 1 HETATM 9 O O3 OE7 . . . F 3 -4.456 1.85 21.131 1 73.33 -1 O3 OE7 601 A 1 HETATM 10 N N4 OE7 . . . F 3 -5.273 11.362 21.576 1 65.03 ? N4 OE7 601 A 1 HETATM 11 C C4 OE7 . . . F 3 -4.684 10.475 22.453 1 62.51 ? C4 OE7 601 A 1 HETATM 12 O O4 OE7 . . . F 3 -3.568 -0.204 20.692 1 80.07 ? O4 OE7 601 A 1 HETATM 13 C C5 OE7 . . . F 3 -3.065 7.778 25.135 1 65.82 ? C5 OE7 601 A 1 HETATM 14 N N5 OE7 . . . F 3 -6.107 1.585 23.289 1 69.43 ? N5 OE7 601 A 1 HETATM 15 C C6 OE7 . . . F 3 -1.759 7.976 24.75 1 65.23 ? C6 OE7 601 A 1 HETATM 16 C C10 OE7 . . . F 3 -6.01 3.939 26.134 1 64.3 ? C10 OE7 601 A 1 HETATM 17 C C11 OE7 . . . F 3 -5.765 3.365 24.866 1 65.86 ? C11 OE7 601 A 1 HETATM 18 C C12 OE7 . . . F 3 -4.783 3.943 24.03 1 67.16 ? C12 OE7 601 A 1 HETATM 19 C C13 OE7 . . . F 3 -4.055 5.071 24.458 1 65.67 ? C13 OE7 601 A 1 HETATM 20 C C14 OE7 . . . F 3 -6.552 2.166 24.419 1 66.85 ? C14 OE7 601 A 1 HETATM 21 C C15 OE7 . . . F 3 -6.601 0.448 22.58 1 70.87 ? C15 OE7 601 A 1 HETATM 22 C C16 OE7 . . . F 3 -7.84 -0.154 22.921 1 70.37 ? C16 OE7 601 A 1 HETATM 23 C C17 OE7 . . . F 3 -8.322 -1.27 22.22 1 70.72 ? C17 OE7 601 A 1 HETATM 24 C C18 OE7 . . . F 3 -7.576 -1.803 21.159 1 74.63 ? C18 OE7 601 A 1 HETATM 25 C C19 OE7 . . . F 3 -6.347 -1.22 20.802 1 74.64 ? C19 OE7 601 A 1 HETATM 26 C C20 OE7 . . . F 3 -5.842 -0.094 21.498 1 74.19 ? C20 OE7 601 A 1 HETATM 27 C C21 OE7 . . . F 3 -4.516 0.488 21.066 1 76.69 ? C21 OE7 601 A 1 HETATM 28 C C7 OE7 . . . F 3 -3.535 6.844 26.222 1 63.78 ? C7 OE7 601 A 1 HETATM 29 C C8 OE7 . . . F 3 -4.302 5.633 25.727 1 65.22 ? C8 OE7 601 A 1 HETATM 30 C C9 OE7 . . . F 3 -5.281 5.062 26.564 1 63.97 ? C9 OE7 601 A 1 HETATM 31 CL CL1 OE7 . . . F 3 -9.83 -1.979 22.662 1 75.83 ? CL1 OE7 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #