data_6PF4
#
_model_server_result.job_id            6dHx39lmnMS1cXRMtjxKlg 
_model_server_result.datetime_utc      '2024-11-22 21:15:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6PF4 
#
_exptl.entry_id    6PF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.417 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]acetic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PF4 
_cell.length_a            92.19 
_cell.length_b            96.437 
_cell.length_c            135.719 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,M,P 1 1 
B,G,H,N 2 1 
C,I,J,O 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_544 -x+1/2,-y-1,z-1/2 -1 0 0 0 -1 0 0 0 1 46.095 -96.437 -67.8595 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H19 N5 O4' 
_chem_comp.formula_weight    417.417 
_chem_comp.id                OF7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N3 OF7 sing 237 n y 
C6 C5 OF7 doub 238 n y 
C7 C5 OF7 sing 239 n n 
C7 C8 OF7 sing 240 n n 
N3 C1 OF7 sing 241 n y 
C5 C2 OF7 sing 242 n y 
C1 C2 OF7 doub 243 n y 
C1 N1 OF7 sing 244 n n 
C2 C3 OF7 sing 245 n n 
C8 C9 OF7 doub 246 n y 
C8 C13 OF7 sing 247 n y 
N1 C4 OF7 doub 248 n n 
C9 C10 OF7 sing 249 n y 
C3 O1 OF7 doub 250 n n 
C3 N2 OF7 sing 251 n n 
C4 N2 OF7 sing 252 n n 
C4 N4 OF7 sing 253 n n 
C13 C12 OF7 doub 254 n y 
C10 C11 OF7 doub 255 n y 
C12 C11 OF7 sing 256 n y 
C11 C14 OF7 sing 257 n n 
C14 O2 OF7 doub 258 n n 
C14 N5 OF7 sing 259 n n 
N5 C15 OF7 sing 260 n n 
O3 C22 OF7 doub 261 n n 
C22 O4 OF7 sing 262 n n 
C22 C21 OF7 sing 263 n n 
C15 C20 OF7 doub 264 n y 
C15 C16 OF7 sing 265 n y 
C20 C19 OF7 sing 266 n y 
C21 C16 OF7 sing 267 n n 
C16 C17 OF7 doub 268 n y 
C19 C18 OF7 doub 269 n y 
C17 C18 OF7 sing 270 n y 
N2 H1 OF7 sing 271 n n 
N3 H2 OF7 sing 272 n n 
C10 H3 OF7 sing 273 n n 
C12 H4 OF7 sing 274 n n 
C13 H5 OF7 sing 275 n n 
C17 H6 OF7 sing 276 n n 
C18 H7 OF7 sing 277 n n 
C19 H8 OF7 sing 278 n n 
C20 H9 OF7 sing 279 n n 
C21 H10 OF7 sing 280 n n 
C21 H11 OF7 sing 281 n n 
C6 H12 OF7 sing 282 n n 
C7 H13 OF7 sing 283 n n 
C7 H14 OF7 sing 284 n n 
C9 H15 OF7 sing 285 n n 
N4 H16 OF7 sing 286 n n 
N4 H17 OF7 sing 287 n n 
N5 H18 OF7 sing 288 n n 
O4 H19 OF7 sing 289 n n 
#
_atom_sites.entry_id                     6PF4 
_atom_sites.fract_transf_matrix[1][1]    0.010847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007368 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP B 1 600 600 UMP UMP . 
F 3 OF7 B 1 601 601 OF7 TS5 . 
G 2 UMP A 1 600 600 UMP UMP . 
H 3 OF7 A 1 601 601 OF7 TS5 . 
I 2 UMP C 1 600 600 UMP UMP . 
J 3 OF7 C 1 601 601 OF7 TS5 . 
K 2 UMP D 1 600 600 UMP UMP . 
L 3 OF7 D 1 601 601 OF7 TS5 . 
M 4 HOH B 1 701 16 HOH HOH . 
M 4 HOH B 2 702 5 HOH HOH . 
M 4 HOH B 3 703 18 HOH HOH . 
M 4 HOH B 4 704 7 HOH HOH . 
M 4 HOH B 5 705 21 HOH HOH . 
M 4 HOH B 6 706 1 HOH HOH . 
N 4 HOH A 1 701 11 HOH HOH . 
N 4 HOH A 2 702 27 HOH HOH . 
N 4 HOH A 3 703 26 HOH HOH . 
N 4 HOH A 4 704 15 HOH HOH . 
N 4 HOH A 5 705 28 HOH HOH . 
N 4 HOH A 6 706 23 HOH HOH . 
N 4 HOH A 7 707 8 HOH HOH . 
N 4 HOH A 8 708 4 HOH HOH . 
N 4 HOH A 9 709 22 HOH HOH . 
N 4 HOH A 10 710 14 HOH HOH . 
O 4 HOH C 1 701 25 HOH HOH . 
O 4 HOH C 2 702 29 HOH HOH . 
O 4 HOH C 3 703 17 HOH HOH . 
O 4 HOH C 4 704 6 HOH HOH . 
O 4 HOH C 5 705 3 HOH HOH . 
O 4 HOH C 6 706 13 HOH HOH . 
P 4 HOH D 1 701 10 HOH HOH . 
P 4 HOH D 2 702 9 HOH HOH . 
P 4 HOH D 3 703 12 HOH HOH . 
P 4 HOH D 4 704 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OF7 . . . F 3 31.922 -5.882 -8.086 1 39.39 ? N1 OF7 601 B 1 
HETATM 2 C C1 OF7 . . . F 3 30.957 -6.708 -7.535 1 39.07 ? C1 OF7 601 B 1 
HETATM 3 O O1 OF7 . . . F 3 27.92 -5.254 -8.669 1 37.59 ? O1 OF7 601 B 1 
HETATM 4 N N2 OF7 . . . F 3 30.079 -4.667 -9.014 1 38.31 ? N2 OF7 601 B 1 
HETATM 5 C C2 OF7 . . . F 3 29.602 -6.58 -7.675 1 38.63 ? C2 OF7 601 B 1 
HETATM 6 O O2 OF7 . . . F 3 24.037 -10.215 -11.927 1 39.09 ? O2 OF7 601 B 1 
HETATM 7 N N3 OF7 . . . F 3 31.199 -7.805 -6.75 1 39.43 ? N3 OF7 601 B 1 
HETATM 8 C C3 OF7 . . . F 3 29.117 -5.453 -8.491 1 37.99 ? C3 OF7 601 B 1 
HETATM 9 O O3 OF7 . . . F 3 30.787 -11.04 -13.368 1 45.39 ? O3 OF7 601 B 1 
HETATM 10 C C10 OF7 . . . F 3 24.955 -9.137 -9.397 1 37.93 ? C10 OF7 601 B 1 
HETATM 11 C C11 OF7 . . . F 3 25.792 -9.674 -10.402 1 39.23 ? C11 OF7 601 B 1 
HETATM 12 C C12 OF7 . . . F 3 27.191 -9.638 -10.212 1 39.52 ? C12 OF7 601 B 1 
HETATM 13 C C13 OF7 . . . F 3 27.742 -9.073 -9.046 1 38.7 ? C13 OF7 601 B 1 
HETATM 14 C C14 OF7 . . . F 3 25.238 -10.29 -11.656 1 40 ? C14 OF7 601 B 1 
HETATM 15 C C15 OF7 . . . F 3 26.143 -11.557 -13.657 1 43.45 ? C15 OF7 601 B 1 
HETATM 16 C C16 OF7 . . . F 3 27.347 -12.17 -14.085 1 46.36 ? C16 OF7 601 B 1 
HETATM 17 C C17 OF7 . . . F 3 27.383 -12.861 -15.317 1 45.86 ? C17 OF7 601 B 1 
HETATM 18 C C18 OF7 . . . F 3 26.231 -12.942 -16.119 1 45.95 ? C18 OF7 601 B 1 
HETATM 19 C C19 OF7 . . . F 3 25.035 -12.334 -15.698 1 44.43 ? C19 OF7 601 B 1 
HETATM 20 C C20 OF7 . . . F 3 24.987 -11.643 -14.473 1 43.8 ? C20 OF7 601 B 1 
HETATM 21 C C21 OF7 . . . F 3 28.606 -12.09 -13.218 1 44.63 ? C21 OF7 601 B 1 
HETATM 22 C C22 OF7 . . . F 3 29.64 -11.126 -13.805 1 47.94 ? C22 OF7 601 B 1 
HETATM 23 C C4 OF7 . . . F 3 31.449 -4.9 -8.801 1 38.92 ? C4 OF7 601 B 1 
HETATM 24 C C5 OF7 . . . F 3 28.978 -7.639 -6.943 1 38.11 ? C5 OF7 601 B 1 
HETATM 25 C C6 OF7 . . . F 3 29.997 -8.376 -6.386 1 38.87 ? C6 OF7 601 B 1 
HETATM 26 C C7 OF7 . . . F 3 27.503 -7.925 -6.797 1 37.49 ? C7 OF7 601 B 1 
HETATM 27 C C8 OF7 . . . F 3 26.904 -8.524 -8.056 1 37.98 ? C8 OF7 601 B 1 
HETATM 28 C C9 OF7 . . . F 3 25.506 -8.565 -8.233 1 37.51 ? C9 OF7 601 B 1 
HETATM 29 N N4 OF7 . . . F 3 32.237 -3.965 -9.438 1 39.5 ? N4 OF7 601 B 1 
HETATM 30 N N5 OF7 . . . F 3 26.187 -10.876 -12.408 1 41.44 ? N5 OF7 601 B 1 
HETATM 31 O O4 OF7 . . . F 3 29.139 -10.404 -14.854 1 46.43 -1 O4 OF7 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#