data_6PF5 # _model_server_result.job_id efngtcPdg9RkDc9LXAzDEw _model_server_result.datetime_utc '2024-11-24 15:03:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6PF5 # _exptl.entry_id 6PF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.443 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.93 _cell.angle_gamma 90 _cell.entry_id 6PF5 _cell.length_a 85.155 _cell.length_b 85.134 _cell.length_c 175.744 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 D,K,L,P 1 4 B,G,H,N 2 1,2 C,I,J,O 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -85.155 0 0 3 'crystal symmetry operation' 2_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -84.940288 0 175.743869 4 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -42.5775 -42.567 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C23 H21 N5 O5' _chem_comp.formula_weight 447.443 _chem_comp.id OED _chem_comp.mon_nstd_flag . _chem_comp.name '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C23 OED doub 237 n n C23 O5 OED sing 238 n n C23 C22 OED sing 239 n n C17 C18 OED doub 240 n y C17 C16 OED sing 241 n y N4 C4 OED sing 242 n n C21 O3 OED sing 243 n n C18 C19 OED sing 244 n y C22 C16 OED sing 245 n n C16 C15 OED doub 246 n y C19 O3 OED sing 247 n n C19 C20 OED doub 248 n y C4 N1 OED doub 249 n n C4 N2 OED sing 250 n n N1 C1 OED sing 251 n n C15 C20 OED sing 252 n y C15 N5 OED sing 253 n n N5 C14 OED sing 254 n n N2 C3 OED sing 255 n n C1 N3 OED sing 256 n y C1 C2 OED doub 257 n y N3 C6 OED sing 258 n y C10 C9 OED doub 259 n y C10 C11 OED sing 260 n y C3 C2 OED sing 261 n n C3 O1 OED doub 262 n n C9 C8 OED sing 263 n y C14 C11 OED sing 264 n n C14 O2 OED doub 265 n n C2 C5 OED sing 266 n y C11 C12 OED doub 267 n y C6 C5 OED doub 268 n y C5 C7 OED sing 269 n n C8 C7 OED sing 270 n n C8 C13 OED doub 271 n y C12 C13 OED sing 272 n y C6 H1 OED sing 273 n n C7 H2 OED sing 274 n n C7 H3 OED sing 275 n n C9 H4 OED sing 276 n n C10 H5 OED sing 277 n n C12 H6 OED sing 278 n n C13 H7 OED sing 279 n n C18 H8 OED sing 280 n n C20 H9 OED sing 281 n n C21 H10 OED sing 282 n n C21 H11 OED sing 283 n n C21 H12 OED sing 284 n n C22 H13 OED sing 285 n n C22 H14 OED sing 286 n n C17 H15 OED sing 287 n n N2 H16 OED sing 288 n n N3 H17 OED sing 289 n n N4 H18 OED sing 290 n n N4 H19 OED sing 291 n n N5 H20 OED sing 292 n n O5 H21 OED sing 293 n n # _atom_sites.entry_id 6PF5 _atom_sites.fract_transf_matrix[1][1] 0.011743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UMP A 1 600 600 UMP UMP . F 3 OED A 1 601 601 OED T10 . G 2 UMP B 1 600 600 UMP UMP . H 3 OED B 1 601 601 OED T10 . I 2 UMP C 1 600 600 UMP UMP . J 3 OED C 1 601 601 OED T10 . K 2 UMP D 1 600 600 UMP UMP . L 3 OED D 1 601 601 OED T10 . M 4 HOH A 1 701 22 HOH HOH . M 4 HOH A 2 702 83 HOH HOH . M 4 HOH A 3 703 55 HOH HOH . M 4 HOH A 4 704 20 HOH HOH . M 4 HOH A 5 705 14 HOH HOH . M 4 HOH A 6 706 45 HOH HOH . M 4 HOH A 7 707 8 HOH HOH . M 4 HOH A 8 708 24 HOH HOH . M 4 HOH A 9 709 114 HOH HOH . M 4 HOH A 10 710 49 HOH HOH . M 4 HOH A 11 711 52 HOH HOH . M 4 HOH A 12 712 79 HOH HOH . M 4 HOH A 13 713 101 HOH HOH . M 4 HOH A 14 714 5 HOH HOH . M 4 HOH A 15 715 69 HOH HOH . M 4 HOH A 16 716 34 HOH HOH . M 4 HOH A 17 717 73 HOH HOH . M 4 HOH A 18 718 123 HOH HOH . M 4 HOH A 19 719 11 HOH HOH . M 4 HOH A 20 720 90 HOH HOH . M 4 HOH A 21 721 47 HOH HOH . M 4 HOH A 22 722 41 HOH HOH . M 4 HOH A 23 723 9 HOH HOH . M 4 HOH A 24 724 112 HOH HOH . M 4 HOH A 25 725 128 HOH HOH . M 4 HOH A 26 726 109 HOH HOH . M 4 HOH A 27 727 42 HOH HOH . M 4 HOH A 28 728 40 HOH HOH . N 4 HOH B 1 701 127 HOH HOH . N 4 HOH B 2 702 75 HOH HOH . N 4 HOH B 3 703 29 HOH HOH . N 4 HOH B 4 704 33 HOH HOH . N 4 HOH B 5 705 12 HOH HOH . N 4 HOH B 6 706 98 HOH HOH . N 4 HOH B 7 707 10 HOH HOH . N 4 HOH B 8 708 96 HOH HOH . N 4 HOH B 9 709 56 HOH HOH . N 4 HOH B 10 710 119 HOH HOH . N 4 HOH B 11 711 36 HOH HOH . N 4 HOH B 12 712 43 HOH HOH . N 4 HOH B 13 713 64 HOH HOH . N 4 HOH B 14 714 113 HOH HOH . N 4 HOH B 15 715 60 HOH HOH . N 4 HOH B 16 716 28 HOH HOH . N 4 HOH B 17 717 7 HOH HOH . N 4 HOH B 18 718 103 HOH HOH . N 4 HOH B 19 719 26 HOH HOH . N 4 HOH B 20 720 63 HOH HOH . N 4 HOH B 21 721 97 HOH HOH . N 4 HOH B 22 722 80 HOH HOH . N 4 HOH B 23 723 19 HOH HOH . N 4 HOH B 24 724 81 HOH HOH . N 4 HOH B 25 725 95 HOH HOH . N 4 HOH B 26 726 68 HOH HOH . N 4 HOH B 27 727 116 HOH HOH . N 4 HOH B 28 728 21 HOH HOH . N 4 HOH B 29 729 72 HOH HOH . N 4 HOH B 30 730 89 HOH HOH . N 4 HOH B 31 731 108 HOH HOH . N 4 HOH B 32 732 126 HOH HOH . N 4 HOH B 33 733 99 HOH HOH . N 4 HOH B 34 734 88 HOH HOH . O 4 HOH C 1 701 35 HOH HOH . O 4 HOH C 2 702 91 HOH HOH . O 4 HOH C 3 703 107 HOH HOH . O 4 HOH C 4 704 17 HOH HOH . O 4 HOH C 5 705 15 HOH HOH . O 4 HOH C 6 706 44 HOH HOH . O 4 HOH C 7 707 48 HOH HOH . O 4 HOH C 8 708 66 HOH HOH . O 4 HOH C 9 709 86 HOH HOH . O 4 HOH C 10 710 4 HOH HOH . O 4 HOH C 11 711 105 HOH HOH . O 4 HOH C 12 712 61 HOH HOH . O 4 HOH C 13 713 54 HOH HOH . O 4 HOH C 14 714 62 HOH HOH . O 4 HOH C 15 715 87 HOH HOH . O 4 HOH C 16 716 3 HOH HOH . O 4 HOH C 17 717 78 HOH HOH . O 4 HOH C 18 718 106 HOH HOH . O 4 HOH C 19 719 94 HOH HOH . O 4 HOH C 20 720 39 HOH HOH . O 4 HOH C 21 721 118 HOH HOH . O 4 HOH C 22 722 84 HOH HOH . O 4 HOH C 23 723 37 HOH HOH . O 4 HOH C 24 724 57 HOH HOH . O 4 HOH C 25 725 18 HOH HOH . O 4 HOH C 26 726 82 HOH HOH . O 4 HOH C 27 727 65 HOH HOH . O 4 HOH C 28 728 50 HOH HOH . O 4 HOH C 29 729 32 HOH HOH . O 4 HOH C 30 730 53 HOH HOH . O 4 HOH C 31 731 85 HOH HOH . O 4 HOH C 32 732 102 HOH HOH . O 4 HOH C 33 733 117 HOH HOH . P 4 HOH D 1 701 31 HOH HOH . P 4 HOH D 2 702 93 HOH HOH . P 4 HOH D 3 703 115 HOH HOH . P 4 HOH D 4 704 13 HOH HOH . P 4 HOH D 5 705 121 HOH HOH . P 4 HOH D 6 706 27 HOH HOH . P 4 HOH D 7 707 23 HOH HOH . P 4 HOH D 8 708 67 HOH HOH . P 4 HOH D 9 709 70 HOH HOH . P 4 HOH D 10 710 111 HOH HOH . P 4 HOH D 11 711 104 HOH HOH . P 4 HOH D 12 712 92 HOH HOH . P 4 HOH D 13 713 100 HOH HOH . P 4 HOH D 14 714 58 HOH HOH . P 4 HOH D 15 715 77 HOH HOH . P 4 HOH D 16 716 110 HOH HOH . P 4 HOH D 17 717 1 HOH HOH . P 4 HOH D 18 718 46 HOH HOH . P 4 HOH D 19 719 2 HOH HOH . P 4 HOH D 20 720 38 HOH HOH . P 4 HOH D 21 721 16 HOH HOH . P 4 HOH D 22 722 30 HOH HOH . P 4 HOH D 23 723 51 HOH HOH . P 4 HOH D 24 724 71 HOH HOH . P 4 HOH D 25 725 76 HOH HOH . P 4 HOH D 26 726 6 HOH HOH . P 4 HOH D 27 727 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OED . . . F 3 -36.195 -5.827 27.419 1 46.18 ? O1 OED 601 A 1 HETATM 2 C C6 OED . . . F 3 -40.567 -5.222 27.192 1 50.81 ? C6 OED 601 A 1 HETATM 3 C C7 OED . . . F 3 -38.746 -4.142 28.644 1 46.96 ? C7 OED 601 A 1 HETATM 4 C C9 OED . . . F 3 -38.126 -2.553 26.739 1 51.46 ? C9 OED 601 A 1 HETATM 5 C C10 OED . . . F 3 -37.461 -1.403 26.265 1 48.32 ? C10 OED 601 A 1 HETATM 6 C C11 OED . . . F 3 -36.706 -0.613 27.166 1 51.53 ? C11 OED 601 A 1 HETATM 7 C C12 OED . . . F 3 -36.63 -0.984 28.524 1 42.71 ? C12 OED 601 A 1 HETATM 8 C C13 OED . . . F 3 -37.291 -2.127 28.993 1 44.25 ? C13 OED 601 A 1 HETATM 9 C C14 OED . . . F 3 -35.961 0.626 26.775 1 53.65 ? C14 OED 601 A 1 HETATM 10 C C15 OED . . . F 3 -35.507 2.313 25.077 1 56.19 ? C15 OED 601 A 1 HETATM 11 C C16 OED . . . F 3 -36.24 3.371 24.47 1 60.1 ? C16 OED 601 A 1 HETATM 12 C C18 OED . . . F 3 -34.153 4.635 24.216 1 52.03 ? C18 OED 601 A 1 HETATM 13 C C20 OED . . . F 3 -34.11 2.447 25.25 1 53.01 ? C20 OED 601 A 1 HETATM 14 C C21 OED . . . F 3 -31.409 4.718 24.161 1 59.62 ? C21 OED 601 A 1 HETATM 15 C C22 OED . . . F 3 -37.751 3.318 24.25 1 58.42 ? C22 OED 601 A 1 HETATM 16 C C23 OED . . . F 3 -38.133 2.418 23.073 1 67.89 ? C23 OED 601 A 1 HETATM 17 C C1 OED . . . F 3 -39.35 -6.657 25.972 1 48.3 ? C1 OED 601 A 1 HETATM 18 C C17 OED . . . F 3 -35.545 4.523 24.042 1 55.94 ? C17 OED 601 A 1 HETATM 19 C C19 OED . . . F 3 -33.421 3.598 24.822 1 53.84 ? C19 OED 601 A 1 HETATM 20 C C2 OED . . . F 3 -38.487 -5.999 26.805 1 45.97 ? C2 OED 601 A 1 HETATM 21 C C3 OED . . . F 3 -37.055 -6.354 26.716 1 47.22 ? C3 OED 601 A 1 HETATM 22 C C4 OED . . . F 3 -37.738 -7.915 25.004 1 48.73 ? C4 OED 601 A 1 HETATM 23 C C5 OED . . . F 3 -39.256 -5.078 27.582 1 48.24 ? C5 OED 601 A 1 HETATM 24 C C8 OED . . . F 3 -38.043 -2.915 28.102 1 47.74 ? C8 OED 601 A 1 HETATM 25 N N1 OED . . . F 3 -39.009 -7.631 25.048 1 49.13 ? N1 OED 601 A 1 HETATM 26 N N2 OED . . . F 3 -36.759 -7.306 25.809 1 48.29 ? N2 OED 601 A 1 HETATM 27 N N3 OED . . . F 3 -40.618 -6.186 26.205 1 50.9 ? N3 OED 601 A 1 HETATM 28 N N4 OED . . . F 3 -37.189 -8.855 24.158 1 52.27 ? N4 OED 601 A 1 HETATM 29 N N5 OED . . . F 3 -36.161 1.14 25.545 1 55.4 ? N5 OED 601 A 1 HETATM 30 O O2 OED . . . F 3 -35.211 1.125 27.614 1 51.99 ? O2 OED 601 A 1 HETATM 31 O O3 OED . . . F 3 -32.062 3.757 24.97 1 56.13 ? O3 OED 601 A 1 HETATM 32 O O4 OED . . . F 3 -38.696 2.844 22.063 1 66.52 ? O4 OED 601 A 1 HETATM 33 O O5 OED . . . F 3 -37.777 1.117 23.285 1 67.15 -1 O5 OED 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #