data_6PF5
#
_model_server_result.job_id            171JpU4sUbzGP_5zm5LkpQ 
_model_server_result.datetime_utc      '2024-11-24 15:00:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pf5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    6PF5 
#
_exptl.entry_id    6PF5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              447.443 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.93 
_cell.angle_gamma         90 
_cell.entry_id            6PF5 
_cell.length_a            85.155 
_cell.length_b            85.134 
_cell.length_c            175.744 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PF5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
D,K,L,P 1 4 
B,G,H,N 2 1,2 
C,I,J,O 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -85.155 0 0 
3 'crystal symmetry operation' 2_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -84.940288 0 175.743869 
4 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -42.5775 -42.567 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C23 H21 N5 O5' 
_chem_comp.formula_weight    447.443 
_chem_comp.id                OED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C23 OED doub 237 n n 
C23 O5 OED sing 238 n n 
C23 C22 OED sing 239 n n 
C17 C18 OED doub 240 n y 
C17 C16 OED sing 241 n y 
N4 C4 OED sing 242 n n 
C21 O3 OED sing 243 n n 
C18 C19 OED sing 244 n y 
C22 C16 OED sing 245 n n 
C16 C15 OED doub 246 n y 
C19 O3 OED sing 247 n n 
C19 C20 OED doub 248 n y 
C4 N1 OED doub 249 n n 
C4 N2 OED sing 250 n n 
N1 C1 OED sing 251 n n 
C15 C20 OED sing 252 n y 
C15 N5 OED sing 253 n n 
N5 C14 OED sing 254 n n 
N2 C3 OED sing 255 n n 
C1 N3 OED sing 256 n y 
C1 C2 OED doub 257 n y 
N3 C6 OED sing 258 n y 
C10 C9 OED doub 259 n y 
C10 C11 OED sing 260 n y 
C3 C2 OED sing 261 n n 
C3 O1 OED doub 262 n n 
C9 C8 OED sing 263 n y 
C14 C11 OED sing 264 n n 
C14 O2 OED doub 265 n n 
C2 C5 OED sing 266 n y 
C11 C12 OED doub 267 n y 
C6 C5 OED doub 268 n y 
C5 C7 OED sing 269 n n 
C8 C7 OED sing 270 n n 
C8 C13 OED doub 271 n y 
C12 C13 OED sing 272 n y 
C6 H1 OED sing 273 n n 
C7 H2 OED sing 274 n n 
C7 H3 OED sing 275 n n 
C9 H4 OED sing 276 n n 
C10 H5 OED sing 277 n n 
C12 H6 OED sing 278 n n 
C13 H7 OED sing 279 n n 
C18 H8 OED sing 280 n n 
C20 H9 OED sing 281 n n 
C21 H10 OED sing 282 n n 
C21 H11 OED sing 283 n n 
C21 H12 OED sing 284 n n 
C22 H13 OED sing 285 n n 
C22 H14 OED sing 286 n n 
C17 H15 OED sing 287 n n 
N2 H16 OED sing 288 n n 
N3 H17 OED sing 289 n n 
N4 H18 OED sing 290 n n 
N4 H19 OED sing 291 n n 
N5 H20 OED sing 292 n n 
O5 H21 OED sing 293 n n 
#
_atom_sites.entry_id                     6PF5 
_atom_sites.fract_transf_matrix[1][1]    0.011743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000015 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP A 1 600 600 UMP UMP . 
F 3 OED A 1 601 601 OED T10 . 
G 2 UMP B 1 600 600 UMP UMP . 
H 3 OED B 1 601 601 OED T10 . 
I 2 UMP C 1 600 600 UMP UMP . 
J 3 OED C 1 601 601 OED T10 . 
K 2 UMP D 1 600 600 UMP UMP . 
L 3 OED D 1 601 601 OED T10 . 
M 4 HOH A 1 701 22 HOH HOH . 
M 4 HOH A 2 702 83 HOH HOH . 
M 4 HOH A 3 703 55 HOH HOH . 
M 4 HOH A 4 704 20 HOH HOH . 
M 4 HOH A 5 705 14 HOH HOH . 
M 4 HOH A 6 706 45 HOH HOH . 
M 4 HOH A 7 707 8 HOH HOH . 
M 4 HOH A 8 708 24 HOH HOH . 
M 4 HOH A 9 709 114 HOH HOH . 
M 4 HOH A 10 710 49 HOH HOH . 
M 4 HOH A 11 711 52 HOH HOH . 
M 4 HOH A 12 712 79 HOH HOH . 
M 4 HOH A 13 713 101 HOH HOH . 
M 4 HOH A 14 714 5 HOH HOH . 
M 4 HOH A 15 715 69 HOH HOH . 
M 4 HOH A 16 716 34 HOH HOH . 
M 4 HOH A 17 717 73 HOH HOH . 
M 4 HOH A 18 718 123 HOH HOH . 
M 4 HOH A 19 719 11 HOH HOH . 
M 4 HOH A 20 720 90 HOH HOH . 
M 4 HOH A 21 721 47 HOH HOH . 
M 4 HOH A 22 722 41 HOH HOH . 
M 4 HOH A 23 723 9 HOH HOH . 
M 4 HOH A 24 724 112 HOH HOH . 
M 4 HOH A 25 725 128 HOH HOH . 
M 4 HOH A 26 726 109 HOH HOH . 
M 4 HOH A 27 727 42 HOH HOH . 
M 4 HOH A 28 728 40 HOH HOH . 
N 4 HOH B 1 701 127 HOH HOH . 
N 4 HOH B 2 702 75 HOH HOH . 
N 4 HOH B 3 703 29 HOH HOH . 
N 4 HOH B 4 704 33 HOH HOH . 
N 4 HOH B 5 705 12 HOH HOH . 
N 4 HOH B 6 706 98 HOH HOH . 
N 4 HOH B 7 707 10 HOH HOH . 
N 4 HOH B 8 708 96 HOH HOH . 
N 4 HOH B 9 709 56 HOH HOH . 
N 4 HOH B 10 710 119 HOH HOH . 
N 4 HOH B 11 711 36 HOH HOH . 
N 4 HOH B 12 712 43 HOH HOH . 
N 4 HOH B 13 713 64 HOH HOH . 
N 4 HOH B 14 714 113 HOH HOH . 
N 4 HOH B 15 715 60 HOH HOH . 
N 4 HOH B 16 716 28 HOH HOH . 
N 4 HOH B 17 717 7 HOH HOH . 
N 4 HOH B 18 718 103 HOH HOH . 
N 4 HOH B 19 719 26 HOH HOH . 
N 4 HOH B 20 720 63 HOH HOH . 
N 4 HOH B 21 721 97 HOH HOH . 
N 4 HOH B 22 722 80 HOH HOH . 
N 4 HOH B 23 723 19 HOH HOH . 
N 4 HOH B 24 724 81 HOH HOH . 
N 4 HOH B 25 725 95 HOH HOH . 
N 4 HOH B 26 726 68 HOH HOH . 
N 4 HOH B 27 727 116 HOH HOH . 
N 4 HOH B 28 728 21 HOH HOH . 
N 4 HOH B 29 729 72 HOH HOH . 
N 4 HOH B 30 730 89 HOH HOH . 
N 4 HOH B 31 731 108 HOH HOH . 
N 4 HOH B 32 732 126 HOH HOH . 
N 4 HOH B 33 733 99 HOH HOH . 
N 4 HOH B 34 734 88 HOH HOH . 
O 4 HOH C 1 701 35 HOH HOH . 
O 4 HOH C 2 702 91 HOH HOH . 
O 4 HOH C 3 703 107 HOH HOH . 
O 4 HOH C 4 704 17 HOH HOH . 
O 4 HOH C 5 705 15 HOH HOH . 
O 4 HOH C 6 706 44 HOH HOH . 
O 4 HOH C 7 707 48 HOH HOH . 
O 4 HOH C 8 708 66 HOH HOH . 
O 4 HOH C 9 709 86 HOH HOH . 
O 4 HOH C 10 710 4 HOH HOH . 
O 4 HOH C 11 711 105 HOH HOH . 
O 4 HOH C 12 712 61 HOH HOH . 
O 4 HOH C 13 713 54 HOH HOH . 
O 4 HOH C 14 714 62 HOH HOH . 
O 4 HOH C 15 715 87 HOH HOH . 
O 4 HOH C 16 716 3 HOH HOH . 
O 4 HOH C 17 717 78 HOH HOH . 
O 4 HOH C 18 718 106 HOH HOH . 
O 4 HOH C 19 719 94 HOH HOH . 
O 4 HOH C 20 720 39 HOH HOH . 
O 4 HOH C 21 721 118 HOH HOH . 
O 4 HOH C 22 722 84 HOH HOH . 
O 4 HOH C 23 723 37 HOH HOH . 
O 4 HOH C 24 724 57 HOH HOH . 
O 4 HOH C 25 725 18 HOH HOH . 
O 4 HOH C 26 726 82 HOH HOH . 
O 4 HOH C 27 727 65 HOH HOH . 
O 4 HOH C 28 728 50 HOH HOH . 
O 4 HOH C 29 729 32 HOH HOH . 
O 4 HOH C 30 730 53 HOH HOH . 
O 4 HOH C 31 731 85 HOH HOH . 
O 4 HOH C 32 732 102 HOH HOH . 
O 4 HOH C 33 733 117 HOH HOH . 
P 4 HOH D 1 701 31 HOH HOH . 
P 4 HOH D 2 702 93 HOH HOH . 
P 4 HOH D 3 703 115 HOH HOH . 
P 4 HOH D 4 704 13 HOH HOH . 
P 4 HOH D 5 705 121 HOH HOH . 
P 4 HOH D 6 706 27 HOH HOH . 
P 4 HOH D 7 707 23 HOH HOH . 
P 4 HOH D 8 708 67 HOH HOH . 
P 4 HOH D 9 709 70 HOH HOH . 
P 4 HOH D 10 710 111 HOH HOH . 
P 4 HOH D 11 711 104 HOH HOH . 
P 4 HOH D 12 712 92 HOH HOH . 
P 4 HOH D 13 713 100 HOH HOH . 
P 4 HOH D 14 714 58 HOH HOH . 
P 4 HOH D 15 715 77 HOH HOH . 
P 4 HOH D 16 716 110 HOH HOH . 
P 4 HOH D 17 717 1 HOH HOH . 
P 4 HOH D 18 718 46 HOH HOH . 
P 4 HOH D 19 719 2 HOH HOH . 
P 4 HOH D 20 720 38 HOH HOH . 
P 4 HOH D 21 721 16 HOH HOH . 
P 4 HOH D 22 722 30 HOH HOH . 
P 4 HOH D 23 723 51 HOH HOH . 
P 4 HOH D 24 724 71 HOH HOH . 
P 4 HOH D 25 725 76 HOH HOH . 
P 4 HOH D 26 726 6 HOH HOH . 
P 4 HOH D 27 727 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 OED . . . H 3 -33.565 34.143 16.476 1 46.73 ? O1 OED 601 B 1 
HETATM 2 C C6 OED . . . H 3 -33.008 29.783 16.843 1 49.68 ? C6 OED 601 B 1 
HETATM 3 C C7 OED . . . H 3 -31.876 31.562 15.371 1 46.38 ? C7 OED 601 B 1 
HETATM 4 C C9 OED . . . H 3 -30.304 32.253 17.281 1 53.9 ? C9 OED 601 B 1 
HETATM 5 C C10 OED . . . H 3 -29.167 32.95 17.747 1 49.38 ? C10 OED 601 B 1 
HETATM 6 C C11 OED . . . H 3 -28.381 33.704 16.839 1 52.49 ? C11 OED 601 B 1 
HETATM 7 C C12 OED . . . H 3 -28.749 33.736 15.477 1 46.78 ? C12 OED 601 B 1 
HETATM 8 C C13 OED . . . H 3 -29.879 33.044 15.017 1 45.69 ? C13 OED 601 B 1 
HETATM 9 C C14 OED . . . H 3 -27.15 34.479 17.22 1 55.15 ? C14 OED 601 B 1 
HETATM 10 C C15 OED . . . H 3 -25.423 34.9 18.921 1 55.73 ? C15 OED 601 B 1 
HETATM 11 C C16 OED . . . H 3 -24.386 34.108 19.486 1 58.61 ? C16 OED 601 B 1 
HETATM 12 C C18 OED . . . H 3 -23.054 36.128 19.859 1 53.82 ? C18 OED 601 B 1 
HETATM 13 C C20 OED . . . H 3 -25.246 36.304 18.825 1 51.34 ? C20 OED 601 B 1 
HETATM 14 C C21 OED . . . H 3 -24.23 38.976 18.068 1 55.89 ? C21 OED 601 B 1 
HETATM 15 C C22 OED . . . H 3 -24.488 32.591 19.618 1 59.24 ? C22 OED 601 B 1 
HETATM 16 C C23 OED . . . H 3 -25.407 32.177 20.766 1 66.39 ? C23 OED 601 B 1 
HETATM 17 C C1 OED . . . H 3 -34.466 31.045 17.995 1 48.89 ? C1 OED 601 B 1 
HETATM 18 C C17 OED . . . H 3 -23.211 34.735 19.952 1 52.95 ? C17 OED 601 B 1 
HETATM 19 C C19 OED . . . H 3 -24.064 36.926 19.297 1 55.56 ? C19 OED 601 B 1 
HETATM 20 C C2 OED . . . H 3 -33.779 31.876 17.151 1 47.99 ? C2 OED 601 B 1 
HETATM 21 C C3 OED . . . H 3 -34.121 33.313 17.19 1 47.71 ? C3 OED 601 B 1 
HETATM 22 C C4 OED . . . H 3 -35.733 32.699 18.881 1 47.02 ? C4 OED 601 B 1 
HETATM 23 C C5 OED . . . H 3 -32.84 31.081 16.423 1 49.39 ? C5 OED 601 B 1 
HETATM 24 C C8 OED . . . H 3 -30.663 32.295 15.914 1 45.99 ? C8 OED 601 B 1 
HETATM 25 N N1 OED . . . H 3 -35.462 31.423 18.883 1 46.95 ? N1 OED 601 B 1 
HETATM 26 N N2 OED . . . H 3 -35.093 33.646 18.064 1 49.61 ? N2 OED 601 B 1 
HETATM 27 N N3 OED . . . H 3 -33.999 29.768 17.806 1 52.04 ? N3 OED 601 B 1 
HETATM 28 N N4 OED . . . H 3 -36.689 33.289 19.682 1 48.75 ? N4 OED 601 B 1 
HETATM 29 N N5 OED . . . H 3 -26.599 34.259 18.431 1 56.58 ? N5 OED 601 B 1 
HETATM 30 O O2 OED . . . H 3 -26.685 35.268 16.395 1 52.12 ? O2 OED 601 B 1 
HETATM 31 O O3 OED . . . H 3 -23.832 38.283 19.243 1 56.99 ? O3 OED 601 B 1 
HETATM 32 O O4 OED . . . H 3 -25.008 31.548 21.747 1 66.46 ? O4 OED 601 B 1 
HETATM 33 O O5 OED . . . H 3 -26.695 32.581 20.562 1 66.7 -1 O5 OED 601 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           517 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#