data_6PF7 # _model_server_result.job_id NPlDTZmsf2VOp_z2HTsPDA _model_server_result.datetime_utc '2024-11-13 11:47:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6PF7 # _exptl.entry_id 6PF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.391 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({4-[(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.68 _cell.angle_gamma 90 _cell.entry_id 6PF7 _cell.length_a 214.774 _cell.length_b 115.789 _cell.length_c 220.142 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,DA,EA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,FA,GA 2 1 E,Z,AA,BA,CA,HA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 196.81248 0 219.408031 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 R N N ? 4 W N N ? 4 BA N N # _chem_comp.formula 'C21 H17 N5 O4' _chem_comp.formula_weight 403.391 _chem_comp.id OG7 _chem_comp.mon_nstd_flag . _chem_comp.name '2-({4-[(2-amino-4-oxo-4,7-dihydro-1H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N04 C04 OG7 sing 376 n n N01 C04 OG7 sing 377 n n N01 C01 OG7 sing 378 n n C04 N02 OG7 doub 379 n n N03 C01 OG7 sing 380 n y N03 C06 OG7 sing 381 n y C01 C02 OG7 doub 382 n y O02 C14 OG7 doub 383 n n N02 C03 OG7 sing 384 n n C12 C13 OG7 doub 385 n y C12 C11 OG7 sing 386 n y C06 C05 OG7 doub 387 n y C02 C03 OG7 sing 388 n n C02 C05 OG7 sing 389 n y C13 C08 OG7 sing 390 n y C03 O01 OG7 doub 391 n n C14 C11 OG7 sing 392 n n C14 N05 OG7 sing 393 n n C05 C07 OG7 sing 394 n n C11 C10 OG7 doub 395 n y O03 C21 OG7 doub 396 n n O04 C21 OG7 sing 397 n n C21 C16 OG7 sing 398 n n C08 C07 OG7 sing 399 n n C08 C09 OG7 doub 400 n y C16 C15 OG7 doub 401 n y C16 C17 OG7 sing 402 n y N05 C15 OG7 sing 403 n n C15 C20 OG7 sing 404 n y C17 C18 OG7 doub 405 n y C18 C19 OG7 sing 406 n y C20 C19 OG7 doub 407 n y C10 C09 OG7 sing 408 n y C10 H1 OG7 sing 409 n n C12 H2 OG7 sing 410 n n C13 H3 OG7 sing 411 n n C17 H4 OG7 sing 412 n n C18 H5 OG7 sing 413 n n C06 H6 OG7 sing 414 n n C07 H7 OG7 sing 415 n n C07 H8 OG7 sing 416 n n C09 H9 OG7 sing 417 n n C19 H10 OG7 sing 418 n n C20 H11 OG7 sing 419 n n N01 H12 OG7 sing 420 n n N03 H13 OG7 sing 421 n n N04 H14 OG7 sing 422 n n N04 H15 OG7 sing 423 n n N05 H16 OG7 sing 424 n n O04 H17 OG7 sing 425 n n # _atom_sites.entry_id 6PF7 _atom_sites.fract_transf_matrix[1][1] 0.004656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000381 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OG7 A 1 603 603 OG7 TS1 . I 5 MTX A 1 604 604 MTX MTX . J 6 SO4 A 1 605 2 SO4 SO4 . K 2 NDP B 1 601 601 NDP NDP . L 3 UFP B 1 602 602 UFP UFP . M 4 OG7 B 1 603 603 OG7 TS1 . N 5 MTX B 1 604 604 MTX MTX . O 6 SO4 B 1 605 1 SO4 SO4 . P 2 NDP C 1 601 601 NDP NDP . Q 3 UFP C 1 602 602 UFP UFP . R 4 OG7 C 1 603 603 OG7 TS1 . S 5 MTX C 1 604 604 MTX MTX . T 6 SO4 C 1 605 3 SO4 SO4 . U 2 NDP D 1 601 601 NDP NDP . V 3 UFP D 1 602 602 UFP UFP . W 4 OG7 D 1 603 603 OG7 TS1 . X 5 MTX D 1 604 604 MTX MTX . Y 6 SO4 D 1 605 4 SO4 SO4 . Z 2 NDP E 1 601 601 NDP NDP . AA 3 UFP E 1 602 602 UFP UFP . BA 4 OG7 E 1 603 603 OG7 TS1 . CA 5 MTX E 1 604 604 MTX MTX . DA 7 HOH A 1 701 74 HOH HOH . DA 7 HOH A 2 702 118 HOH HOH . DA 7 HOH A 3 703 51 HOH HOH . DA 7 HOH A 4 704 26 HOH HOH . DA 7 HOH A 5 705 56 HOH HOH . DA 7 HOH A 6 706 59 HOH HOH . DA 7 HOH A 7 707 64 HOH HOH . DA 7 HOH A 8 708 36 HOH HOH . DA 7 HOH A 9 709 32 HOH HOH . DA 7 HOH A 10 710 39 HOH HOH . DA 7 HOH A 11 711 58 HOH HOH . DA 7 HOH A 12 712 68 HOH HOH . DA 7 HOH A 13 713 114 HOH HOH . DA 7 HOH A 14 714 38 HOH HOH . DA 7 HOH A 15 715 53 HOH HOH . DA 7 HOH A 16 716 69 HOH HOH . DA 7 HOH A 17 717 37 HOH HOH . DA 7 HOH A 18 718 78 HOH HOH . DA 7 HOH A 19 719 107 HOH HOH . DA 7 HOH A 20 720 19 HOH HOH . DA 7 HOH A 21 721 132 HOH HOH . DA 7 HOH A 22 722 10 HOH HOH . DA 7 HOH A 23 723 17 HOH HOH . DA 7 HOH A 24 724 57 HOH HOH . DA 7 HOH A 25 725 12 HOH HOH . DA 7 HOH A 26 726 152 HOH HOH . DA 7 HOH A 27 727 3 HOH HOH . DA 7 HOH A 28 728 134 HOH HOH . DA 7 HOH A 29 729 7 HOH HOH . DA 7 HOH A 30 730 96 HOH HOH . DA 7 HOH A 31 731 135 HOH HOH . DA 7 HOH A 32 732 112 HOH HOH . DA 7 HOH A 33 733 133 HOH HOH . DA 7 HOH A 34 734 99 HOH HOH . DA 7 HOH A 35 735 111 HOH HOH . DA 7 HOH A 36 736 43 HOH HOH . DA 7 HOH A 37 737 4 HOH HOH . DA 7 HOH A 38 738 24 HOH HOH . DA 7 HOH A 39 739 66 HOH HOH . DA 7 HOH A 40 740 140 HOH HOH . DA 7 HOH A 41 741 23 HOH HOH . DA 7 HOH A 42 742 13 HOH HOH . DA 7 HOH A 43 743 5 HOH HOH . DA 7 HOH A 44 744 80 HOH HOH . DA 7 HOH A 45 745 142 HOH HOH . DA 7 HOH A 46 746 120 HOH HOH . DA 7 HOH A 47 747 82 HOH HOH . DA 7 HOH A 48 748 73 HOH HOH . DA 7 HOH A 49 749 93 HOH HOH . DA 7 HOH A 50 750 143 HOH HOH . DA 7 HOH A 51 751 117 HOH HOH . DA 7 HOH A 52 752 95 HOH HOH . DA 7 HOH A 53 753 122 HOH HOH . DA 7 HOH A 54 754 92 HOH HOH . DA 7 HOH A 55 755 75 HOH HOH . EA 7 HOH B 1 701 100 HOH HOH . EA 7 HOH B 2 702 89 HOH HOH . EA 7 HOH B 3 703 101 HOH HOH . EA 7 HOH B 4 704 54 HOH HOH . EA 7 HOH B 5 705 110 HOH HOH . EA 7 HOH B 6 706 18 HOH HOH . EA 7 HOH B 7 707 21 HOH HOH . EA 7 HOH B 8 708 87 HOH HOH . EA 7 HOH B 9 709 55 HOH HOH . EA 7 HOH B 10 710 50 HOH HOH . EA 7 HOH B 11 711 145 HOH HOH . EA 7 HOH B 12 712 81 HOH HOH . EA 7 HOH B 13 713 123 HOH HOH . EA 7 HOH B 14 714 14 HOH HOH . EA 7 HOH B 15 715 15 HOH HOH . EA 7 HOH B 16 716 45 HOH HOH . EA 7 HOH B 17 717 79 HOH HOH . EA 7 HOH B 18 718 131 HOH HOH . EA 7 HOH B 19 719 139 HOH HOH . EA 7 HOH B 20 720 128 HOH HOH . EA 7 HOH B 21 721 85 HOH HOH . EA 7 HOH B 22 722 130 HOH HOH . EA 7 HOH B 23 723 9 HOH HOH . EA 7 HOH B 24 724 47 HOH HOH . EA 7 HOH B 25 725 137 HOH HOH . EA 7 HOH B 26 726 91 HOH HOH . EA 7 HOH B 27 727 106 HOH HOH . FA 7 HOH C 1 701 121 HOH HOH . FA 7 HOH C 2 702 42 HOH HOH . FA 7 HOH C 3 703 102 HOH HOH . FA 7 HOH C 4 704 105 HOH HOH . FA 7 HOH C 5 705 94 HOH HOH . FA 7 HOH C 6 706 119 HOH HOH . FA 7 HOH C 7 707 70 HOH HOH . FA 7 HOH C 8 708 6 HOH HOH . FA 7 HOH C 9 709 49 HOH HOH . FA 7 HOH C 10 710 60 HOH HOH . FA 7 HOH C 11 711 46 HOH HOH . FA 7 HOH C 12 712 149 HOH HOH . FA 7 HOH C 13 713 71 HOH HOH . FA 7 HOH C 14 714 41 HOH HOH . FA 7 HOH C 15 715 84 HOH HOH . FA 7 HOH C 16 716 83 HOH HOH . FA 7 HOH C 17 717 76 HOH HOH . FA 7 HOH C 18 718 20 HOH HOH . FA 7 HOH C 19 719 8 HOH HOH . FA 7 HOH C 20 720 124 HOH HOH . FA 7 HOH C 21 721 2 HOH HOH . FA 7 HOH C 22 722 108 HOH HOH . FA 7 HOH C 23 723 138 HOH HOH . FA 7 HOH C 24 724 16 HOH HOH . FA 7 HOH C 25 725 126 HOH HOH . FA 7 HOH C 26 726 144 HOH HOH . FA 7 HOH C 27 727 104 HOH HOH . FA 7 HOH C 28 728 113 HOH HOH . GA 7 HOH D 1 701 125 HOH HOH . GA 7 HOH D 2 702 88 HOH HOH . GA 7 HOH D 3 703 67 HOH HOH . GA 7 HOH D 4 704 34 HOH HOH . GA 7 HOH D 5 705 44 HOH HOH . GA 7 HOH D 6 706 11 HOH HOH . GA 7 HOH D 7 707 115 HOH HOH . GA 7 HOH D 8 708 22 HOH HOH . GA 7 HOH D 9 709 25 HOH HOH . GA 7 HOH D 10 710 97 HOH HOH . GA 7 HOH D 11 711 109 HOH HOH . GA 7 HOH D 12 712 90 HOH HOH . GA 7 HOH D 13 713 147 HOH HOH . GA 7 HOH D 14 714 28 HOH HOH . GA 7 HOH D 15 715 63 HOH HOH . GA 7 HOH D 16 716 141 HOH HOH . GA 7 HOH D 17 717 77 HOH HOH . GA 7 HOH D 18 718 61 HOH HOH . GA 7 HOH D 19 719 86 HOH HOH . GA 7 HOH D 20 720 65 HOH HOH . GA 7 HOH D 21 721 1 HOH HOH . GA 7 HOH D 22 722 127 HOH HOH . GA 7 HOH D 23 723 148 HOH HOH . GA 7 HOH D 24 724 151 HOH HOH . GA 7 HOH D 25 725 72 HOH HOH . HA 7 HOH E 1 701 62 HOH HOH . HA 7 HOH E 2 702 52 HOH HOH . HA 7 HOH E 3 703 103 HOH HOH . HA 7 HOH E 4 704 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OG7 . . . H 4 46.163 -41.626 -4.064 1 56.65 ? C10 OG7 603 A 1 HETATM 2 C C11 OG7 . . . H 4 46.366 -42.04 -5.406 1 62.92 ? C11 OG7 603 A 1 HETATM 3 C C12 OG7 . . . H 4 46.239 -41.066 -6.427 1 62.47 ? C12 OG7 603 A 1 HETATM 4 C C13 OG7 . . . H 4 45.922 -39.727 -6.114 1 56.11 ? C13 OG7 603 A 1 HETATM 5 C C14 OG7 . . . H 4 46.706 -43.471 -5.767 1 70.6 ? C14 OG7 603 A 1 HETATM 6 C C15 OG7 . . . H 4 47.137 -45.723 -4.589 1 57.62 ? C15 OG7 603 A 1 HETATM 7 C C16 OG7 . . . H 4 48.459 -46.276 -4.747 1 87.4 ? C16 OG7 603 A 1 HETATM 8 C C17 OG7 . . . H 4 48.621 -47.676 -4.581 1 101.06 ? C17 OG7 603 A 1 HETATM 9 C C18 OG7 . . . H 4 47.548 -48.527 -4.262 1 104.76 ? C18 OG7 603 A 1 HETATM 10 C C01 OG7 . . . H 4 43.053 -36.744 -7.126 1 72.6 ? C01 OG7 603 A 1 HETATM 11 C C02 OG7 . . . H 4 43.353 -37.621 -6.129 1 86.04 ? C02 OG7 603 A 1 HETATM 12 C C03 OG7 . . . H 4 42.378 -38.726 -5.859 1 78.21 ? C03 OG7 603 A 1 HETATM 13 C C04 OG7 . . . H 4 41.016 -37.93 -7.583 1 70.42 ? C04 OG7 603 A 1 HETATM 14 C C05 OG7 . . . H 4 44.603 -37.195 -5.562 1 70.89 ? C05 OG7 603 A 1 HETATM 15 C C06 OG7 . . . H 4 45.002 -36.083 -6.272 1 72.73 ? C06 OG7 603 A 1 HETATM 16 C C07 OG7 . . . H 4 45.373 -37.861 -4.441 1 66.44 ? C07 OG7 603 A 1 HETATM 17 C C08 OG7 . . . H 4 45.723 -39.316 -4.774 1 61.81 ? C08 OG7 603 A 1 HETATM 18 C C09 OG7 . . . H 4 45.842 -40.285 -3.753 1 61.98 ? C09 OG7 603 A 1 HETATM 19 C C19 OG7 . . . H 4 46.264 -47.989 -4.102 1 77.47 ? C19 OG7 603 A 1 HETATM 20 C C20 OG7 . . . H 4 46.075 -46.607 -4.258 1 69.51 ? C20 OG7 603 A 1 HETATM 21 C C21 OG7 . . . H 4 49.72 -45.498 -5.091 1 96.65 ? C21 OG7 603 A 1 HETATM 22 N N01 OG7 . . . H 4 41.889 -36.885 -7.864 1 72.71 ? N01 OG7 603 A 1 HETATM 23 N N02 OG7 . . . H 4 41.221 -38.805 -6.649 1 66.12 ? N02 OG7 603 A 1 HETATM 24 N N03 OG7 . . . H 4 44.042 -35.8 -7.232 1 82.18 ? N03 OG7 603 A 1 HETATM 25 N N04 OG7 . . . H 4 39.887 -37.995 -8.365 1 61.79 ? N04 OG7 603 A 1 HETATM 26 N N05 OG7 . . . H 4 46.853 -44.321 -4.722 1 69.84 ? N05 OG7 603 A 1 HETATM 27 O O01 OG7 . . . H 4 42.611 -39.535 -4.966 1 81.76 ? O01 OG7 603 A 1 HETATM 28 O O02 OG7 . . . H 4 46.823 -43.779 -6.955 1 58.75 ? O02 OG7 603 A 1 HETATM 29 O O03 OG7 . . . H 4 49.636 -44.279 -5.339 1 108.47 ? O03 OG7 603 A 1 HETATM 30 O O04 OG7 . . . H 4 50.837 -46.069 -5.118 1 66.84 ? O04 OG7 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 94 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #