data_6PF9
#
_model_server_result.job_id            B1tbVouyiSItS-mirnwxcQ 
_model_server_result.datetime_utc      '2024-11-13 11:41:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":603}' 
#
_entry.id    6PF9 
#
_exptl.entry_id    6PF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.417 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]acetic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.87 
_cell.angle_gamma         90 
_cell.entry_id            6PF9 
_cell.length_a            214.201 
_cell.length_b            116.51 
_cell.length_c            221.439 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,H,I,J 1 1,2 
B,C,K,L,M,N,O,P,Q,R,S,T,EA,FA 2 1 
D,U,V,W,X,Y,GA 3 1 
E,Z,AA,BA,CA,DA,HA 3 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 107.1005 58.255 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 R N N 
? 4 W N N 
? 4 BA N N 
#
_chem_comp.formula           'C22 H19 N5 O4' 
_chem_comp.formula_weight    417.417 
_chem_comp.id                OF7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N3 OF7 sing 376 n y 
C6 C5 OF7 doub 377 n y 
C7 C5 OF7 sing 378 n n 
C7 C8 OF7 sing 379 n n 
N3 C1 OF7 sing 380 n y 
C5 C2 OF7 sing 381 n y 
C1 C2 OF7 doub 382 n y 
C1 N1 OF7 sing 383 n n 
C2 C3 OF7 sing 384 n n 
C8 C9 OF7 doub 385 n y 
C8 C13 OF7 sing 386 n y 
N1 C4 OF7 doub 387 n n 
C9 C10 OF7 sing 388 n y 
C3 O1 OF7 doub 389 n n 
C3 N2 OF7 sing 390 n n 
C4 N2 OF7 sing 391 n n 
C4 N4 OF7 sing 392 n n 
C13 C12 OF7 doub 393 n y 
C10 C11 OF7 doub 394 n y 
C12 C11 OF7 sing 395 n y 
C11 C14 OF7 sing 396 n n 
C14 O2 OF7 doub 397 n n 
C14 N5 OF7 sing 398 n n 
N5 C15 OF7 sing 399 n n 
O3 C22 OF7 doub 400 n n 
C22 O4 OF7 sing 401 n n 
C22 C21 OF7 sing 402 n n 
C15 C20 OF7 doub 403 n y 
C15 C16 OF7 sing 404 n y 
C20 C19 OF7 sing 405 n y 
C21 C16 OF7 sing 406 n n 
C16 C17 OF7 doub 407 n y 
C19 C18 OF7 doub 408 n y 
C17 C18 OF7 sing 409 n y 
N2 H1 OF7 sing 410 n n 
N3 H2 OF7 sing 411 n n 
C10 H3 OF7 sing 412 n n 
C12 H4 OF7 sing 413 n n 
C13 H5 OF7 sing 414 n n 
C17 H6 OF7 sing 415 n n 
C18 H7 OF7 sing 416 n n 
C19 H8 OF7 sing 417 n n 
C20 H9 OF7 sing 418 n n 
C21 H10 OF7 sing 419 n n 
C21 H11 OF7 sing 420 n n 
C6 H12 OF7 sing 421 n n 
C7 H13 OF7 sing 422 n n 
C7 H14 OF7 sing 423 n n 
C9 H15 OF7 sing 424 n n 
N4 H16 OF7 sing 425 n n 
N4 H17 OF7 sing 426 n n 
N5 H18 OF7 sing 427 n n 
O4 H19 OF7 sing 428 n n 
#
_atom_sites.entry_id                     6PF9 
_atom_sites.fract_transf_matrix[1][1]    0.004669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000398 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OF7 A 1 603 603 OF7 M80 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 6 SO4 A 1 605 5 SO4 SO4 . 
K 2 NDP B 1 601 601 NDP NDP . 
L 3 UFP B 1 602 602 UFP UFP . 
M 4 OF7 B 1 603 603 OF7 M80 . 
N 5 MTX B 1 604 604 MTX MTX . 
O 6 SO4 B 1 605 1 SO4 SO4 . 
P 2 NDP C 1 601 601 NDP NDP . 
Q 3 UFP C 1 602 602 UFP UFP . 
R 4 OF7 C 1 603 603 OF7 M80 . 
S 5 MTX C 1 604 604 MTX MTX . 
T 6 SO4 C 1 605 4 SO4 SO4 . 
U 2 NDP D 1 601 601 NDP NDP . 
V 3 UFP D 1 602 602 UFP UFP . 
W 4 OF7 D 1 603 603 OF7 M80 . 
X 5 MTX D 1 604 604 MTX MTX . 
Y 6 SO4 D 1 605 2 SO4 SO4 . 
Z 2 NDP E 1 601 601 NDP NDP . 
AA 3 UFP E 1 602 602 UFP UFP . 
BA 4 OF7 E 1 603 603 OF7 M80 . 
CA 5 MTX E 1 604 604 MTX MTX . 
DA 6 SO4 E 1 605 3 SO4 SO4 . 
EA 7 HOH B 1 701 3 HOH HOH . 
FA 7 HOH C 1 701 9 HOH HOH . 
FA 7 HOH C 2 702 7 HOH HOH . 
FA 7 HOH C 3 703 6 HOH HOH . 
FA 7 HOH C 4 704 12 HOH HOH . 
GA 7 HOH D 1 701 5 HOH HOH . 
GA 7 HOH D 2 702 10 HOH HOH . 
GA 7 HOH D 3 703 4 HOH HOH . 
GA 7 HOH D 4 704 1 HOH HOH . 
GA 7 HOH D 5 705 11 HOH HOH . 
HA 7 HOH E 1 701 8 HOH HOH . 
HA 7 HOH E 2 702 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OF7 . . . M 4 3.358 15.044 65.833 1 116.23 ? N1 OF7 603 B 1 
HETATM 2 C C1 OF7 . . . M 4 4.11 15.225 66.981 1 104.27 ? C1 OF7 603 B 1 
HETATM 3 O O1 OF7 . . . M 4 7.141 16.609 65.695 1 108.97 ? O1 OF7 603 B 1 
HETATM 4 N N2 OF7 . . . M 4 5.249 15.948 64.669 1 102.07 ? N2 OF7 603 B 1 
HETATM 5 C C2 OF7 . . . M 4 5.379 15.74 67.046 1 122.35 ? C2 OF7 603 B 1 
HETATM 6 O O2 OF7 . . . M 4 7.053 22.674 67.834 1 101.86 ? O2 OF7 603 B 1 
HETATM 7 N N3 OF7 . . . M 4 3.705 14.917 68.256 1 105.11 ? N3 OF7 603 B 1 
HETATM 8 C C3 OF7 . . . M 4 6.008 16.137 65.765 1 110.53 ? C3 OF7 603 B 1 
HETATM 9 O O3 OF7 . . . M 4 9.882 25.949 71.389 1 119.12 ? O3 OF7 603 B 1 
HETATM 10 C C10 OF7 . . . M 4 8.884 19.558 68.367 1 88.13 ? C10 OF7 603 B 1 
HETATM 11 C C11 OF7 . . . M 4 7.798 20.457 68.237 1 104.31 ? C11 OF7 603 B 1 
HETATM 12 C C12 OF7 . . . M 4 6.482 19.959 68.368 1 97.46 ? C12 OF7 603 B 1 
HETATM 13 C C13 OF7 . . . M 4 6.255 18.592 68.618 1 98.68 ? C13 OF7 603 B 1 
HETATM 14 C C14 OF7 . . . M 4 8.019 21.923 67.976 1 111.13 ? C14 OF7 603 B 1 
HETATM 15 C C15 OF7 . . . M 4 9.891 23.598 67.708 1 120.51 ? C15 OF7 603 B 1 
HETATM 16 C C16 OF7 . . . M 4 9.6 24.711 68.554 1 124.01 ? C16 OF7 603 B 1 
HETATM 17 C C17 OF7 . . . M 4 10.205 25.96 68.283 1 125.7 ? C17 OF7 603 B 1 
HETATM 18 C C18 OF7 . . . M 4 11.093 26.123 67.205 1 129.24 ? C18 OF7 603 B 1 
HETATM 19 C C19 OF7 . . . M 4 11.388 25.031 66.373 1 113.06 ? C19 OF7 603 B 1 
HETATM 20 C C20 OF7 . . . M 4 10.795 23.78 66.628 1 108.75 ? C20 OF7 603 B 1 
HETATM 21 C C21 OF7 . . . M 4 8.645 24.637 69.75 1 123.94 ? C21 OF7 603 B 1 
HETATM 22 C C22 OF7 . . . M 4 9.348 24.882 71.089 1 128.37 ? C22 OF7 603 B 1 
HETATM 23 C C4 OF7 . . . M 4 3.952 15.411 64.729 1 114.39 ? C4 OF7 603 B 1 
HETATM 24 C C5 OF7 . . . M 4 5.777 15.746 68.425 1 119.18 ? C5 OF7 603 B 1 
HETATM 25 C C6 OF7 . . . M 4 4.716 15.235 69.14 1 110.44 ? C6 OF7 603 B 1 
HETATM 26 C C7 OF7 . . . M 4 7.085 16.224 69.009 1 96.01 ? C7 OF7 603 B 1 
HETATM 27 C C8 OF7 . . . M 4 7.339 17.698 68.738 1 91.98 ? C8 OF7 603 B 1 
HETATM 28 C C9 OF7 . . . M 4 8.655 18.189 68.613 1 84.55 ? C9 OF7 603 B 1 
HETATM 29 N N4 OF7 . . . M 4 3.386 15.316 63.475 1 99.59 ? N4 OF7 603 B 1 
HETATM 30 N N5 OF7 . . . M 4 9.312 22.311 67.934 1 113.12 ? N5 OF7 603 B 1 
HETATM 31 O O4 OF7 . . . M 4 9.294 23.783 71.897 1 104 -1 O4 OF7 603 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#