data_6PFA # _model_server_result.job_id cB5m7ezwz1OuSCzmg9QvAA _model_server_result.datetime_utc '2024-11-13 02:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":601}' # _entry.id 6PFA # _exptl.entry_id 6PFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.72 _cell.angle_gamma 90 _cell.entry_id 6PFA _cell.length_a 213.21 _cell.length_b 117.294 _cell.length_c 222.817 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,EA,FA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,GA,HA 2 1 E,Z,AA,BA,CA,DA,IA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.21 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 K N N ? 2 P N N ? 2 U N N ? 2 Z N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 6PFA _atom_sites.fract_transf_matrix[1][1] 0.00469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OF4 A 1 603 603 OF4 M85 . I 5 MTX A 1 604 604 MTX MTX . J 6 SO4 A 1 605 2 SO4 SO4 . K 2 NDP B 1 601 601 NDP NDP . L 3 UFP B 1 602 602 UFP UFP . M 4 OF4 B 1 603 603 OF4 M85 . N 5 MTX B 1 604 604 MTX MTX . O 6 SO4 B 1 605 1 SO4 SO4 . P 2 NDP C 1 601 601 NDP NDP . Q 3 UFP C 1 602 602 UFP UFP . R 4 OF4 C 1 603 603 OF4 M85 . S 5 MTX C 1 604 604 MTX MTX . T 6 SO4 C 1 605 3 SO4 SO4 . U 2 NDP D 1 601 601 NDP NDP . V 3 UFP D 1 602 602 UFP UFP . W 4 OF4 D 1 603 603 OF4 M85 . X 5 MTX D 1 604 604 MTX MTX . Y 6 SO4 D 1 605 4 SO4 SO4 . Z 2 NDP E 1 601 601 NDP NDP . AA 3 UFP E 1 602 602 UFP UFP . BA 4 OF4 E 1 603 603 OF4 M85 . CA 5 MTX E 1 604 604 MTX MTX . DA 6 SO4 E 1 605 5 SO4 SO4 . EA 7 HOH A 1 701 98 HOH HOH . EA 7 HOH A 2 702 59 HOH HOH . EA 7 HOH A 3 703 95 HOH HOH . EA 7 HOH A 4 704 63 HOH HOH . EA 7 HOH A 5 705 54 HOH HOH . EA 7 HOH A 6 706 4 HOH HOH . EA 7 HOH A 7 707 65 HOH HOH . EA 7 HOH A 8 708 100 HOH HOH . EA 7 HOH A 9 709 23 HOH HOH . EA 7 HOH A 10 710 6 HOH HOH . EA 7 HOH A 11 711 36 HOH HOH . EA 7 HOH A 12 712 45 HOH HOH . EA 7 HOH A 13 713 19 HOH HOH . EA 7 HOH A 14 714 72 HOH HOH . EA 7 HOH A 15 715 81 HOH HOH . EA 7 HOH A 16 716 62 HOH HOH . EA 7 HOH A 17 717 28 HOH HOH . EA 7 HOH A 18 718 70 HOH HOH . EA 7 HOH A 19 719 33 HOH HOH . EA 7 HOH A 20 720 110 HOH HOH . EA 7 HOH A 21 721 76 HOH HOH . EA 7 HOH A 22 722 96 HOH HOH . EA 7 HOH A 23 723 109 HOH HOH . EA 7 HOH A 24 724 69 HOH HOH . FA 7 HOH B 1 701 44 HOH HOH . FA 7 HOH B 2 702 1 HOH HOH . FA 7 HOH B 3 703 73 HOH HOH . FA 7 HOH B 4 704 3 HOH HOH . FA 7 HOH B 5 705 56 HOH HOH . FA 7 HOH B 6 706 67 HOH HOH . FA 7 HOH B 7 707 22 HOH HOH . FA 7 HOH B 8 708 13 HOH HOH . FA 7 HOH B 9 709 16 HOH HOH . FA 7 HOH B 10 710 55 HOH HOH . FA 7 HOH B 11 711 41 HOH HOH . FA 7 HOH B 12 712 99 HOH HOH . FA 7 HOH B 13 713 71 HOH HOH . FA 7 HOH B 14 714 27 HOH HOH . FA 7 HOH B 15 715 25 HOH HOH . FA 7 HOH B 16 716 2 HOH HOH . FA 7 HOH B 17 717 86 HOH HOH . FA 7 HOH B 18 718 50 HOH HOH . FA 7 HOH B 19 719 8 HOH HOH . FA 7 HOH B 20 720 12 HOH HOH . FA 7 HOH B 21 721 35 HOH HOH . FA 7 HOH B 22 722 11 HOH HOH . FA 7 HOH B 23 723 39 HOH HOH . FA 7 HOH B 24 724 32 HOH HOH . FA 7 HOH B 25 725 88 HOH HOH . FA 7 HOH B 26 726 40 HOH HOH . FA 7 HOH B 27 727 66 HOH HOH . FA 7 HOH B 28 728 101 HOH HOH . FA 7 HOH B 29 729 9 HOH HOH . FA 7 HOH B 30 730 43 HOH HOH . FA 7 HOH B 31 731 14 HOH HOH . FA 7 HOH B 32 732 105 HOH HOH . FA 7 HOH B 33 733 10 HOH HOH . FA 7 HOH B 34 734 18 HOH HOH . FA 7 HOH B 35 735 38 HOH HOH . FA 7 HOH B 36 736 57 HOH HOH . FA 7 HOH B 37 737 107 HOH HOH . GA 7 HOH C 1 701 15 HOH HOH . GA 7 HOH C 2 702 104 HOH HOH . GA 7 HOH C 3 703 48 HOH HOH . GA 7 HOH C 4 704 68 HOH HOH . GA 7 HOH C 5 705 29 HOH HOH . GA 7 HOH C 6 706 58 HOH HOH . GA 7 HOH C 7 707 30 HOH HOH . GA 7 HOH C 8 708 80 HOH HOH . GA 7 HOH C 9 709 78 HOH HOH . GA 7 HOH C 10 710 20 HOH HOH . GA 7 HOH C 11 711 90 HOH HOH . GA 7 HOH C 12 712 97 HOH HOH . GA 7 HOH C 13 713 24 HOH HOH . GA 7 HOH C 14 714 17 HOH HOH . GA 7 HOH C 15 715 64 HOH HOH . HA 7 HOH D 1 701 51 HOH HOH . HA 7 HOH D 2 702 77 HOH HOH . HA 7 HOH D 3 703 74 HOH HOH . HA 7 HOH D 4 704 42 HOH HOH . HA 7 HOH D 5 705 5 HOH HOH . HA 7 HOH D 6 706 83 HOH HOH . HA 7 HOH D 7 707 37 HOH HOH . HA 7 HOH D 8 708 92 HOH HOH . HA 7 HOH D 9 709 52 HOH HOH . HA 7 HOH D 10 710 61 HOH HOH . HA 7 HOH D 11 711 85 HOH HOH . HA 7 HOH D 12 712 94 HOH HOH . HA 7 HOH D 13 713 79 HOH HOH . HA 7 HOH D 14 714 26 HOH HOH . HA 7 HOH D 15 715 106 HOH HOH . HA 7 HOH D 16 716 102 HOH HOH . HA 7 HOH D 17 717 47 HOH HOH . HA 7 HOH D 18 718 82 HOH HOH . IA 7 HOH E 1 701 31 HOH HOH . IA 7 HOH E 2 702 7 HOH HOH . IA 7 HOH E 3 703 21 HOH HOH . IA 7 HOH E 4 704 84 HOH HOH . IA 7 HOH E 5 705 111 HOH HOH . IA 7 HOH E 6 706 46 HOH HOH . IA 7 HOH E 7 707 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . Z 2 -115.145 -53.844 37.51 1 85.05 ? PA NDP 601 E 1 HETATM 2 O O1A NDP . . . Z 2 -116.07 -53.528 36.353 1 94.56 ? O1A NDP 601 E 1 HETATM 3 O O2A NDP . . . Z 2 -113.838 -54.363 36.982 1 79.22 ? O2A NDP 601 E 1 HETATM 4 O O5B NDP . . . Z 2 -114.871 -52.568 38.316 1 92.42 ? O5B NDP 601 E 1 HETATM 5 C C5B NDP . . . Z 2 -115.93 -51.801 38.826 1 86.95 ? C5B NDP 601 E 1 HETATM 6 C C4B NDP . . . Z 2 -115.592 -50.506 39.439 1 90.47 ? C4B NDP 601 E 1 HETATM 7 O O4B NDP . . . Z 2 -115.253 -49.564 38.444 1 95.67 ? O4B NDP 601 E 1 HETATM 8 C C3B NDP . . . Z 2 -116.722 -49.913 40.159 1 89.68 ? C3B NDP 601 E 1 HETATM 9 O O3B NDP . . . Z 2 -116.814 -50.378 41.46 1 78.14 ? O3B NDP 601 E 1 HETATM 10 C C2B NDP . . . Z 2 -116.403 -48.507 40.125 1 95.48 ? C2B NDP 601 E 1 HETATM 11 O O2B NDP . . . Z 2 -115.406 -48.194 41.057 1 98.34 ? O2B NDP 601 E 1 HETATM 12 C C1B NDP . . . Z 2 -115.852 -48.328 38.794 1 99.33 ? C1B NDP 601 E 1 HETATM 13 N N9A NDP . . . Z 2 -116.874 -47.976 37.867 1 109.87 ? N9A NDP 601 E 1 HETATM 14 C C8A NDP . . . Z 2 -117.525 -48.822 37.029 1 105.37 ? C8A NDP 601 E 1 HETATM 15 N N7A NDP . . . Z 2 -118.419 -48.128 36.298 1 115.94 ? N7A NDP 601 E 1 HETATM 16 C C5A NDP . . . Z 2 -118.342 -46.804 36.667 1 116.36 ? C5A NDP 601 E 1 HETATM 17 C C6A NDP . . . Z 2 -119.011 -45.62 36.267 1 117.56 ? C6A NDP 601 E 1 HETATM 18 N N6A NDP . . . Z 2 -120.058 -45.69 35.215 1 117.59 ? N6A NDP 601 E 1 HETATM 19 N N1A NDP . . . Z 2 -118.698 -44.426 36.842 1 113.11 ? N1A NDP 601 E 1 HETATM 20 C C2A NDP . . . Z 2 -117.737 -44.386 37.804 1 109.58 ? C2A NDP 601 E 1 HETATM 21 N N3A NDP . . . Z 2 -117.079 -45.475 38.214 1 109.24 ? N3A NDP 601 E 1 HETATM 22 C C4A NDP . . . Z 2 -117.362 -46.711 37.659 1 107.19 ? C4A NDP 601 E 1 HETATM 23 O O3 NDP . . . Z 2 -115.801 -54.928 38.482 1 83.34 ? O3 NDP 601 E 1 HETATM 24 P PN NDP . . . Z 2 -116.304 -56.355 37.986 1 93.15 ? PN NDP 601 E 1 HETATM 25 O O1N NDP . . . Z 2 -116.96 -57.119 39.145 1 88.28 ? O1N NDP 601 E 1 HETATM 26 O O2N NDP . . . Z 2 -117.324 -56.181 36.881 1 98.06 ? O2N NDP 601 E 1 HETATM 27 O O5D NDP . . . Z 2 -115.037 -57.218 37.462 1 94.63 ? O5D NDP 601 E 1 HETATM 28 C C5D NDP . . . Z 2 -114.331 -58.026 38.369 1 90.97 ? C5D NDP 601 E 1 HETATM 29 C C4D NDP . . . Z 2 -114.34 -59.459 38.124 1 96.94 ? C4D NDP 601 E 1 HETATM 30 O O4D NDP . . . Z 2 -114.266 -59.701 36.72 1 109.52 ? O4D NDP 601 E 1 HETATM 31 C C3D NDP . . . Z 2 -113.174 -60.122 38.719 1 99.16 ? C3D NDP 601 E 1 HETATM 32 O O3D NDP . . . Z 2 -113.513 -61.428 39.059 1 90.72 ? O3D NDP 601 E 1 HETATM 33 C C2D NDP . . . Z 2 -112.228 -60.135 37.655 1 99.18 ? C2D NDP 601 E 1 HETATM 34 O O2D NDP . . . Z 2 -111.277 -61.139 37.846 1 84.4 ? O2D NDP 601 E 1 HETATM 35 C C1D NDP . . . Z 2 -113.09 -60.4 36.483 1 101.03 ? C1D NDP 601 E 1 HETATM 36 N N1N NDP . . . Z 2 -112.457 -59.972 35.273 1 93.27 ? N1N NDP 601 E 1 HETATM 37 C C2N NDP . . . Z 2 -112.376 -60.843 34.252 1 85.87 ? C2N NDP 601 E 1 HETATM 38 C C3N NDP . . . Z 2 -111.764 -60.478 33.044 1 91.39 ? C3N NDP 601 E 1 HETATM 39 C C7N NDP . . . Z 2 -111.693 -61.493 31.915 1 85.04 ? C7N NDP 601 E 1 HETATM 40 O O7N NDP . . . Z 2 -111.216 -61.148 30.822 1 86.89 ? O7N NDP 601 E 1 HETATM 41 N N7N NDP . . . Z 2 -112.166 -62.838 32.086 1 79.94 ? N7N NDP 601 E 1 HETATM 42 C C4N NDP . . . Z 2 -111.232 -59.183 32.894 1 92.34 ? C4N NDP 601 E 1 HETATM 43 C C5N NDP . . . Z 2 -111.337 -58.301 33.978 1 86.51 ? C5N NDP 601 E 1 HETATM 44 C C6N NDP . . . Z 2 -111.951 -58.705 35.162 1 93.25 ? C6N NDP 601 E 1 HETATM 45 P P2B NDP . . . Z 2 -115.731 -47.392 42.356 1 95.73 ? P2B NDP 601 E 1 HETATM 46 O O1X NDP . . . Z 2 -116.681 -48.234 43.229 1 80.91 ? O1X NDP 601 E 1 HETATM 47 O O2X NDP . . . Z 2 -114.479 -47.125 43.086 1 90.93 ? O2X NDP 601 E 1 HETATM 48 O O3X NDP . . . Z 2 -116.371 -46.082 42.022 1 94.81 ? O3X NDP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #