data_6PFA # _model_server_result.job_id ENQqa7LjmsQO_GwdoeZ12g _model_server_result.datetime_utc '2024-12-01 00:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6PFA # _exptl.entry_id 6PFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.417 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)methyl]benzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.72 _cell.angle_gamma 90 _cell.entry_id 6PFA _cell.length_a 213.21 _cell.length_b 117.294 _cell.length_c 222.817 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,EA,FA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,GA,HA 2 1 E,Z,AA,BA,CA,DA,IA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.21 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 R N N ? 4 W N N ? 4 BA N N # _chem_comp.formula 'C22 H19 N5 O4' _chem_comp.formula_weight 417.417 _chem_comp.id OF4 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)methyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 OF4 doub 376 n y C20 C19 OF4 sing 377 n y C21 C16 OF4 sing 378 n y O2 C14 OF4 doub 379 n n C19 C18 OF4 doub 380 n y C16 C15 OF4 sing 381 n n C16 C17 OF4 doub 382 n y C15 N5 OF4 sing 383 n n O4 C22 OF4 doub 384 n n N4 C4 OF4 sing 385 n n C18 C17 OF4 sing 386 n y C17 C22 OF4 sing 387 n n C22 O3 OF4 sing 388 n n C14 N5 OF4 sing 389 n n C14 C11 OF4 sing 390 n n C4 N2 OF4 sing 391 n n C4 N1 OF4 doub 392 n n N2 C3 OF4 sing 393 n n C11 C12 OF4 doub 394 n y C11 C10 OF4 sing 395 n y C12 C13 OF4 sing 396 n y N1 C1 OF4 sing 397 n n C3 O1 OF4 doub 398 n n C3 C2 OF4 sing 399 n n C10 C9 OF4 doub 400 n y C13 C8 OF4 doub 401 n y C1 C2 OF4 doub 402 n y C1 N3 OF4 sing 403 n y C2 C5 OF4 sing 404 n y C9 C8 OF4 sing 405 n y C8 C7 OF4 sing 406 n n N3 C6 OF4 sing 407 n y C5 C6 OF4 doub 408 n y C5 C7 OF4 sing 409 n n C10 H1 OF4 sing 410 n n C21 H2 OF4 sing 411 n n C12 H3 OF4 sing 412 n n C13 H4 OF4 sing 413 n n C15 H5 OF4 sing 414 n n C15 H6 OF4 sing 415 n n C18 H7 OF4 sing 416 n n C19 H8 OF4 sing 417 n n C20 H9 OF4 sing 418 n n C6 H10 OF4 sing 419 n n C7 H11 OF4 sing 420 n n C7 H12 OF4 sing 421 n n C9 H13 OF4 sing 422 n n N2 H14 OF4 sing 423 n n N3 H15 OF4 sing 424 n n N4 H16 OF4 sing 425 n n N4 H17 OF4 sing 426 n n N5 H18 OF4 sing 427 n n O3 H19 OF4 sing 428 n n # _atom_sites.entry_id 6PFA _atom_sites.fract_transf_matrix[1][1] 0.00469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OF4 A 1 603 603 OF4 M85 . I 5 MTX A 1 604 604 MTX MTX . J 6 SO4 A 1 605 2 SO4 SO4 . K 2 NDP B 1 601 601 NDP NDP . L 3 UFP B 1 602 602 UFP UFP . M 4 OF4 B 1 603 603 OF4 M85 . N 5 MTX B 1 604 604 MTX MTX . O 6 SO4 B 1 605 1 SO4 SO4 . P 2 NDP C 1 601 601 NDP NDP . Q 3 UFP C 1 602 602 UFP UFP . R 4 OF4 C 1 603 603 OF4 M85 . S 5 MTX C 1 604 604 MTX MTX . T 6 SO4 C 1 605 3 SO4 SO4 . U 2 NDP D 1 601 601 NDP NDP . V 3 UFP D 1 602 602 UFP UFP . W 4 OF4 D 1 603 603 OF4 M85 . X 5 MTX D 1 604 604 MTX MTX . Y 6 SO4 D 1 605 4 SO4 SO4 . Z 2 NDP E 1 601 601 NDP NDP . AA 3 UFP E 1 602 602 UFP UFP . BA 4 OF4 E 1 603 603 OF4 M85 . CA 5 MTX E 1 604 604 MTX MTX . DA 6 SO4 E 1 605 5 SO4 SO4 . EA 7 HOH A 1 701 98 HOH HOH . EA 7 HOH A 2 702 59 HOH HOH . EA 7 HOH A 3 703 95 HOH HOH . EA 7 HOH A 4 704 63 HOH HOH . EA 7 HOH A 5 705 54 HOH HOH . EA 7 HOH A 6 706 4 HOH HOH . EA 7 HOH A 7 707 65 HOH HOH . EA 7 HOH A 8 708 100 HOH HOH . EA 7 HOH A 9 709 23 HOH HOH . EA 7 HOH A 10 710 6 HOH HOH . EA 7 HOH A 11 711 36 HOH HOH . EA 7 HOH A 12 712 45 HOH HOH . EA 7 HOH A 13 713 19 HOH HOH . EA 7 HOH A 14 714 72 HOH HOH . EA 7 HOH A 15 715 81 HOH HOH . EA 7 HOH A 16 716 62 HOH HOH . EA 7 HOH A 17 717 28 HOH HOH . EA 7 HOH A 18 718 70 HOH HOH . EA 7 HOH A 19 719 33 HOH HOH . EA 7 HOH A 20 720 110 HOH HOH . EA 7 HOH A 21 721 76 HOH HOH . EA 7 HOH A 22 722 96 HOH HOH . EA 7 HOH A 23 723 109 HOH HOH . EA 7 HOH A 24 724 69 HOH HOH . FA 7 HOH B 1 701 44 HOH HOH . FA 7 HOH B 2 702 1 HOH HOH . FA 7 HOH B 3 703 73 HOH HOH . FA 7 HOH B 4 704 3 HOH HOH . FA 7 HOH B 5 705 56 HOH HOH . FA 7 HOH B 6 706 67 HOH HOH . FA 7 HOH B 7 707 22 HOH HOH . FA 7 HOH B 8 708 13 HOH HOH . FA 7 HOH B 9 709 16 HOH HOH . FA 7 HOH B 10 710 55 HOH HOH . FA 7 HOH B 11 711 41 HOH HOH . FA 7 HOH B 12 712 99 HOH HOH . FA 7 HOH B 13 713 71 HOH HOH . FA 7 HOH B 14 714 27 HOH HOH . FA 7 HOH B 15 715 25 HOH HOH . FA 7 HOH B 16 716 2 HOH HOH . FA 7 HOH B 17 717 86 HOH HOH . FA 7 HOH B 18 718 50 HOH HOH . FA 7 HOH B 19 719 8 HOH HOH . FA 7 HOH B 20 720 12 HOH HOH . FA 7 HOH B 21 721 35 HOH HOH . FA 7 HOH B 22 722 11 HOH HOH . FA 7 HOH B 23 723 39 HOH HOH . FA 7 HOH B 24 724 32 HOH HOH . FA 7 HOH B 25 725 88 HOH HOH . FA 7 HOH B 26 726 40 HOH HOH . FA 7 HOH B 27 727 66 HOH HOH . FA 7 HOH B 28 728 101 HOH HOH . FA 7 HOH B 29 729 9 HOH HOH . FA 7 HOH B 30 730 43 HOH HOH . FA 7 HOH B 31 731 14 HOH HOH . FA 7 HOH B 32 732 105 HOH HOH . FA 7 HOH B 33 733 10 HOH HOH . FA 7 HOH B 34 734 18 HOH HOH . FA 7 HOH B 35 735 38 HOH HOH . FA 7 HOH B 36 736 57 HOH HOH . FA 7 HOH B 37 737 107 HOH HOH . GA 7 HOH C 1 701 15 HOH HOH . GA 7 HOH C 2 702 104 HOH HOH . GA 7 HOH C 3 703 48 HOH HOH . GA 7 HOH C 4 704 68 HOH HOH . GA 7 HOH C 5 705 29 HOH HOH . GA 7 HOH C 6 706 58 HOH HOH . GA 7 HOH C 7 707 30 HOH HOH . GA 7 HOH C 8 708 80 HOH HOH . GA 7 HOH C 9 709 78 HOH HOH . GA 7 HOH C 10 710 20 HOH HOH . GA 7 HOH C 11 711 90 HOH HOH . GA 7 HOH C 12 712 97 HOH HOH . GA 7 HOH C 13 713 24 HOH HOH . GA 7 HOH C 14 714 17 HOH HOH . GA 7 HOH C 15 715 64 HOH HOH . HA 7 HOH D 1 701 51 HOH HOH . HA 7 HOH D 2 702 77 HOH HOH . HA 7 HOH D 3 703 74 HOH HOH . HA 7 HOH D 4 704 42 HOH HOH . HA 7 HOH D 5 705 5 HOH HOH . HA 7 HOH D 6 706 83 HOH HOH . HA 7 HOH D 7 707 37 HOH HOH . HA 7 HOH D 8 708 92 HOH HOH . HA 7 HOH D 9 709 52 HOH HOH . HA 7 HOH D 10 710 61 HOH HOH . HA 7 HOH D 11 711 85 HOH HOH . HA 7 HOH D 12 712 94 HOH HOH . HA 7 HOH D 13 713 79 HOH HOH . HA 7 HOH D 14 714 26 HOH HOH . HA 7 HOH D 15 715 106 HOH HOH . HA 7 HOH D 16 716 102 HOH HOH . HA 7 HOH D 17 717 47 HOH HOH . HA 7 HOH D 18 718 82 HOH HOH . IA 7 HOH E 1 701 31 HOH HOH . IA 7 HOH E 2 702 7 HOH HOH . IA 7 HOH E 3 703 21 HOH HOH . IA 7 HOH E 4 704 84 HOH HOH . IA 7 HOH E 5 705 111 HOH HOH . IA 7 HOH E 6 706 46 HOH HOH . IA 7 HOH E 7 707 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OF4 . . . H 4 -34.346 -18.589 89.158 1 70.31 ? C10 OF4 603 A 1 HETATM 2 C C11 OF4 . . . H 4 -34.502 -17.562 88.193 1 81.17 ? C11 OF4 603 A 1 HETATM 3 C C21 OF4 . . . H 4 -30.517 -19.721 85.87 1 75.4 ? C21 OF4 603 A 1 HETATM 4 C C22 OF4 . . . H 4 -28.21 -16.853 87.05 1 118.54 ? C22 OF4 603 A 1 HETATM 5 C C1 OF4 . . . H 4 -40.698 -17.825 89.283 1 80.7 ? C1 OF4 603 A 1 HETATM 6 C C12 OF4 . . . H 4 -35.648 -16.741 88.25 1 84.3 ? C12 OF4 603 A 1 HETATM 7 C C13 OF4 . . . H 4 -36.62 -16.929 89.248 1 78.23 ? C13 OF4 603 A 1 HETATM 8 C C14 OF4 . . . H 4 -33.502 -17.306 87.1 1 79.38 ? C14 OF4 603 A 1 HETATM 9 C C15 OF4 . . . H 4 -31.172 -17.348 86.352 1 89.07 ? C15 OF4 603 A 1 HETATM 10 C C16 OF4 . . . H 4 -30.103 -18.434 86.28 1 91.15 ? C16 OF4 603 A 1 HETATM 11 C C17 OF4 . . . H 4 -28.733 -18.201 86.609 1 132.72 ? C17 OF4 603 A 1 HETATM 12 C C18 OF4 . . . H 4 -27.821 -19.283 86.504 1 121.86 ? C18 OF4 603 A 1 HETATM 13 C C19 OF4 . . . H 4 -28.249 -20.561 86.094 1 114.81 ? C19 OF4 603 A 1 HETATM 14 C C2 OF4 . . . H 4 -39.493 -18.438 89.505 1 93.83 ? C2 OF4 603 A 1 HETATM 15 C C20 OF4 . . . H 4 -29.599 -20.781 85.775 1 95.04 ? C20 OF4 603 A 1 HETATM 16 C C3 OF4 . . . H 4 -39.117 -19.533 88.58 1 84.8 ? C3 OF4 603 A 1 HETATM 17 C C4 OF4 . . . H 4 -41.226 -19.106 87.486 1 73.87 ? C4 OF4 603 A 1 HETATM 18 C C5 OF4 . . . H 4 -38.886 -17.807 90.645 1 83.16 ? C5 OF4 603 A 1 HETATM 19 C C6 OF4 . . . H 4 -39.759 -16.832 91.066 1 85.13 ? C6 OF4 603 A 1 HETATM 20 C C7 OF4 . . . H 4 -37.547 -18.13 91.261 1 88.07 ? C7 OF4 603 A 1 HETATM 21 C C8 OF4 . . . H 4 -36.468 -17.947 90.208 1 79 ? C8 OF4 603 A 1 HETATM 22 C C9 OF4 . . . H 4 -35.326 -18.778 90.158 1 76.04 ? C9 OF4 603 A 1 HETATM 23 N N1 OF4 . . . H 4 -41.6 -18.136 88.276 1 89.44 ? N1 OF4 603 A 1 HETATM 24 N N2 OF4 . . . H 4 -40.015 -19.806 87.613 1 74.57 ? N2 OF4 603 A 1 HETATM 25 N N3 OF4 . . . H 4 -40.863 -16.848 90.234 1 85.75 ? N3 OF4 603 A 1 HETATM 26 N N4 OF4 . . . H 4 -41.972 -19.574 86.426 1 70.9 ? N4 OF4 603 A 1 HETATM 27 N N5 OF4 . . . H 4 -32.213 -17.575 87.348 1 93.72 ? N5 OF4 603 A 1 HETATM 28 O O1 OF4 . . . H 4 -38.062 -20.157 88.677 1 74.85 ? O1 OF4 603 A 1 HETATM 29 O O2 OF4 . . . H 4 -33.876 -16.863 86.016 1 84.52 ? O2 OF4 603 A 1 HETATM 30 O O3 OF4 . . . H 4 -28.713 -16.417 88.243 1 111.68 -1 O3 OF4 603 A 1 HETATM 31 O O4 OF4 . . . H 4 -27.394 -16.203 86.398 1 98.81 ? O4 OF4 603 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #