data_6PFB # _model_server_result.job_id oAhxqFadQXaujwzxtHNJlw _model_server_result.datetime_utc '2024-11-25 08:48:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 6PFB # _exptl.entry_id 6PFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.75 _cell.angle_gamma 90 _cell.entry_id 6PFB _cell.length_a 213.994 _cell.length_b 116.238 _cell.length_c 221.672 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 158.925217 0 662.732004 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 292 n n PA O2A NDP sing 293 n n PA O5B NDP sing 294 n n PA O3 NDP sing 295 n n O2A HOA2 NDP sing 296 n n O5B C5B NDP sing 297 n n C5B C4B NDP sing 298 n n C5B H51A NDP sing 299 n n C5B H52A NDP sing 300 n n C4B O4B NDP sing 301 n n C4B C3B NDP sing 302 n n C4B H4B NDP sing 303 n n O4B C1B NDP sing 304 n n C3B O3B NDP sing 305 n n C3B C2B NDP sing 306 n n C3B H3B NDP sing 307 n n O3B HO3A NDP sing 308 n n C2B O2B NDP sing 309 n n C2B C1B NDP sing 310 n n C2B H2B NDP sing 311 n n O2B P2B NDP sing 312 n n C1B N9A NDP sing 313 n n C1B H1B NDP sing 314 n n N9A C8A NDP sing 315 n y N9A C4A NDP sing 316 n y C8A N7A NDP doub 317 n y C8A H8A NDP sing 318 n n N7A C5A NDP sing 319 n y C5A C6A NDP sing 320 n y C5A C4A NDP doub 321 n y C6A N6A NDP sing 322 n n C6A N1A NDP doub 323 n y N6A H61A NDP sing 324 n n N6A H62A NDP sing 325 n n N1A C2A NDP sing 326 n y C2A N3A NDP doub 327 n y C2A H2A NDP sing 328 n n N3A C4A NDP sing 329 n y O3 PN NDP sing 330 n n PN O1N NDP doub 331 n n PN O2N NDP sing 332 n n PN O5D NDP sing 333 n n O2N H21N NDP sing 334 n n O5D C5D NDP sing 335 n n C5D C4D NDP sing 336 n n C5D H51N NDP sing 337 n n C5D H52N NDP sing 338 n n C4D O4D NDP sing 339 n n C4D C3D NDP sing 340 n n C4D H4D NDP sing 341 n n O4D C1D NDP sing 342 n n C3D O3D NDP sing 343 n n C3D C2D NDP sing 344 n n C3D H3D NDP sing 345 n n O3D HO3N NDP sing 346 n n C2D O2D NDP sing 347 n n C2D C1D NDP sing 348 n n C2D H2D NDP sing 349 n n O2D HO2N NDP sing 350 n n C1D N1N NDP sing 351 n n C1D H1D NDP sing 352 n n N1N C2N NDP sing 353 n n N1N C6N NDP sing 354 n n C2N C3N NDP doub 355 n n C2N H2N NDP sing 356 n n C3N C7N NDP sing 357 n n C3N C4N NDP sing 358 n n C7N O7N NDP doub 359 n n C7N N7N NDP sing 360 n n N7N H71N NDP sing 361 n n N7N H72N NDP sing 362 n n C4N C5N NDP sing 363 n n C4N H41N NDP sing 364 n n C4N H42N NDP sing 365 n n C5N C6N NDP doub 366 n n C5N H5N NDP sing 367 n n C6N H6N NDP sing 368 n n P2B O1X NDP doub 369 n n P2B O2X NDP sing 370 n n P2B O3X NDP sing 371 n n O2X HOP2 NDP sing 372 n n O3X HOP3 NDP sing 373 n n # _atom_sites.entry_id 6PFB _atom_sites.fract_transf_matrix[1][1] 0.004673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OG4 A 1 603 603 OG4 TS7 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OG4 B 1 603 603 OG4 TS7 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OG4 C 1 603 603 OG4 TS7 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OG4 D 1 603 603 OG4 TS7 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OG4 E 1 603 603 OG4 TS7 . Y 5 MTX E 1 604 604 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 86.772 82.339 293.577 1 103.52 ? PA NDP 601 E 1 HETATM 2 O O1A NDP . . . V 2 87.708 82.642 294.728 1 103.75 ? O1A NDP 601 E 1 HETATM 3 O O2A NDP . . . V 2 85.497 81.741 294.097 1 92.56 ? O2A NDP 601 E 1 HETATM 4 O O5B NDP . . . V 2 86.438 83.643 292.846 1 105.04 ? O5B NDP 601 E 1 HETATM 5 C C5B NDP . . . V 2 87.485 84.436 292.36 1 109.76 ? C5B NDP 601 E 1 HETATM 6 C C4B NDP . . . V 2 87.135 85.618 291.56 1 111.12 ? C4B NDP 601 E 1 HETATM 7 O O4B NDP . . . V 2 86.782 86.692 292.404 1 117.32 ? O4B NDP 601 E 1 HETATM 8 C C3B NDP . . . V 2 88.281 86.089 290.779 1 113.67 ? C3B NDP 601 E 1 HETATM 9 O O3B NDP . . . V 2 88.329 85.486 289.534 1 121.66 ? O3B NDP 601 E 1 HETATM 10 C C2B NDP . . . V 2 88.03 87.502 290.669 1 119.2 ? C2B NDP 601 E 1 HETATM 11 O O2B NDP . . . V 2 87.044 87.744 289.706 1 117.18 ? O2B NDP 601 E 1 HETATM 12 C C1B NDP . . . V 2 87.499 87.836 291.975 1 118.58 ? C1B NDP 601 E 1 HETATM 13 N N9A NDP . . . V 2 88.55 88.136 292.888 1 137.27 ? N9A NDP 601 E 1 HETATM 14 C C8A NDP . . . V 2 89.31 87.239 293.563 1 132.73 ? C8A NDP 601 E 1 HETATM 15 N N7A NDP . . . V 2 90.196 87.894 294.338 1 121.58 ? N7A NDP 601 E 1 HETATM 16 C C5A NDP . . . V 2 90.002 89.245 294.166 1 121.13 ? C5A NDP 601 E 1 HETATM 17 C C6A NDP . . . V 2 90.606 90.413 294.695 1 122.06 ? C6A NDP 601 E 1 HETATM 18 N N6A NDP . . . V 2 91.719 90.288 295.671 1 128.36 ? N6A NDP 601 E 1 HETATM 19 N N1A NDP . . . V 2 90.17 91.643 294.312 1 119.44 ? N1A NDP 601 E 1 HETATM 20 C C2A NDP . . . V 2 89.15 91.738 293.417 1 114.01 ? C2A NDP 601 E 1 HETATM 21 N N3A NDP . . . V 2 88.549 90.667 292.891 1 121.48 ? N3A NDP 601 E 1 HETATM 22 C C4A NDP . . . V 2 88.957 89.394 293.25 1 130.36 ? C4A NDP 601 E 1 HETATM 23 O O3 NDP . . . V 2 87.457 81.328 292.552 1 120.74 ? O3 NDP 601 E 1 HETATM 24 P PN NDP . . . V 2 87.933 79.87 292.975 1 114.75 ? PN NDP 601 E 1 HETATM 25 O O1N NDP . . . V 2 88.481 79.124 291.75 1 99.31 ? O1N NDP 601 E 1 HETATM 26 O O2N NDP . . . V 2 89.025 79.979 294.016 1 120.54 ? O2N NDP 601 E 1 HETATM 27 O O5D NDP . . . V 2 86.674 79.036 293.564 1 101.05 ? O5D NDP 601 E 1 HETATM 28 C C5D NDP . . . V 2 85.886 78.273 292.687 1 101.64 ? C5D NDP 601 E 1 HETATM 29 C C4D NDP . . . V 2 85.905 76.828 292.847 1 113.77 ? C4D NDP 601 E 1 HETATM 30 O O4D NDP . . . V 2 85.856 76.501 294.234 1 124.19 ? O4D NDP 601 E 1 HETATM 31 C C3D NDP . . . V 2 84.725 76.208 292.233 1 115.92 ? C3D NDP 601 E 1 HETATM 32 O O3D NDP . . . V 2 85.037 74.925 291.799 1 113.04 ? O3D NDP 601 E 1 HETATM 33 C C2D NDP . . . V 2 83.795 76.119 293.304 1 114.26 ? C2D NDP 601 E 1 HETATM 34 O O2D NDP . . . V 2 82.889 75.087 293.066 1 93.58 ? O2D NDP 601 E 1 HETATM 35 C C1D NDP . . . V 2 84.667 75.821 294.46 1 121.53 ? C1D NDP 601 E 1 HETATM 36 N N1N NDP . . . V 2 84.052 76.232 295.685 1 117.43 ? N1N NDP 601 E 1 HETATM 37 C C2N NDP . . . V 2 84.072 75.378 296.722 1 111.82 ? C2N NDP 601 E 1 HETATM 38 C C3N NDP . . . V 2 83.489 75.725 297.949 1 108.84 ? C3N NDP 601 E 1 HETATM 39 C C7N NDP . . . V 2 83.536 74.725 299.092 1 106.86 ? C7N NDP 601 E 1 HETATM 40 O O7N NDP . . . V 2 83.193 75.086 300.229 1 108.46 ? O7N NDP 601 E 1 HETATM 41 N N7N NDP . . . V 2 83.962 73.37 298.88 1 104.5 ? N7N NDP 601 E 1 HETATM 42 C C4N NDP . . . V 2 82.873 76.981 298.099 1 106.44 ? C4N NDP 601 E 1 HETATM 43 C C5N NDP . . . V 2 82.871 77.845 296.997 1 108.09 ? C5N NDP 601 E 1 HETATM 44 C C6N NDP . . . V 2 83.463 77.463 295.794 1 110.49 ? C6N NDP 601 E 1 HETATM 45 P P2B NDP . . . V 2 87.267 88.794 288.574 1 110.96 ? P2B NDP 601 E 1 HETATM 46 O O1X NDP . . . V 2 87.587 88.045 287.267 1 105.51 ? O1X NDP 601 E 1 HETATM 47 O O2X NDP . . . V 2 86.041 89.59 288.399 1 109.28 ? O2X NDP 601 E 1 HETATM 48 O O3X NDP . . . V 2 88.39 89.719 288.919 1 119.76 ? O3X NDP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #