data_6PFB # _model_server_result.job_id RdD99tuaOPTWnBCP04ZQIw _model_server_result.datetime_utc '2024-11-13 11:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":603}' # _entry.id 6PFB # _exptl.entry_id 6PFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.444 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]propanoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.75 _cell.angle_gamma 90 _cell.entry_id 6PFB _cell.length_a 213.994 _cell.length_b 116.238 _cell.length_c 221.672 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 158.925217 0 662.732004 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N # _chem_comp.formula 'C23 H21 N5 O4' _chem_comp.formula_weight 431.444 _chem_comp.id OG4 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)phenyl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C4 OG4 sing 374 n n N1 C4 OG4 doub 375 n n N1 C1 OG4 sing 376 n n C4 N2 OG4 sing 377 n n N3 C1 OG4 sing 378 n y N3 C6 OG4 sing 379 n y C1 C2 OG4 doub 380 n y O2 C14 OG4 doub 381 n n N2 C3 OG4 sing 382 n n C12 C13 OG4 doub 383 n y C12 C11 OG4 sing 384 n y C6 C5 OG4 doub 385 n y C13 C8 OG4 sing 386 n y C2 C3 OG4 sing 387 n n C2 C5 OG4 sing 388 n y C22 C21 OG4 sing 389 n n C22 C23 OG4 sing 390 n n O3 C23 OG4 doub 391 n n C3 O1 OG4 doub 392 n n C14 C11 OG4 sing 393 n n C14 N5 OG4 sing 394 n n C5 C7 OG4 sing 395 n n C21 C16 OG4 sing 396 n n C11 C10 OG4 doub 397 n y C23 O4 OG4 sing 398 n n C16 C17 OG4 doub 399 n y C16 C15 OG4 sing 400 n y C17 C18 OG4 sing 401 n y C8 C7 OG4 sing 402 n n C8 C9 OG4 doub 403 n y N5 C15 OG4 sing 404 n n C15 C20 OG4 doub 405 n y C18 C19 OG4 doub 406 n y C10 C9 OG4 sing 407 n y C20 C19 OG4 sing 408 n y C10 H1 OG4 sing 409 n n C12 H2 OG4 sing 410 n n C13 H3 OG4 sing 411 n n C17 H4 OG4 sing 412 n n C18 H5 OG4 sing 413 n n C19 H6 OG4 sing 414 n n C20 H7 OG4 sing 415 n n C21 H8 OG4 sing 416 n n C21 H9 OG4 sing 417 n n C22 H10 OG4 sing 418 n n C22 H11 OG4 sing 419 n n C6 H12 OG4 sing 420 n n C7 H13 OG4 sing 421 n n C7 H14 OG4 sing 422 n n C9 H15 OG4 sing 423 n n N2 H16 OG4 sing 424 n n N3 H17 OG4 sing 425 n n N4 H18 OG4 sing 426 n n N4 H19 OG4 sing 427 n n N5 H20 OG4 sing 428 n n O4 H21 OG4 sing 429 n n # _atom_sites.entry_id 6PFB _atom_sites.fract_transf_matrix[1][1] 0.004673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000389 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OG4 A 1 603 603 OG4 TS7 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OG4 B 1 603 603 OG4 TS7 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OG4 C 1 603 603 OG4 TS7 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OG4 D 1 603 603 OG4 TS7 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OG4 E 1 603 603 OG4 TS7 . Y 5 MTX E 1 604 604 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OG4 . . . X 4 97.29 38.911 324.101 1 123.67 ? C1 OG4 603 E 1 HETATM 2 C C10 OG4 . . . X 4 96.831 42.33 318.736 1 107.45 ? C10 OG4 603 E 1 HETATM 3 C C11 OG4 . . . X 4 98.175 41.986 318.662 1 109.78 ? C11 OG4 603 E 1 HETATM 4 C C12 OG4 . . . X 4 98.644 40.865 319.337 1 100.47 ? C12 OG4 603 E 1 HETATM 5 C C13 OG4 . . . X 4 97.765 40.082 320.078 1 103.4 ? C13 OG4 603 E 1 HETATM 6 C C14 OG4 . . . X 4 99.121 42.84 317.87 1 115.27 ? C14 OG4 603 E 1 HETATM 7 C C15 OG4 . . . X 4 99.07 44.916 316.455 1 121.37 ? C15 OG4 603 E 1 HETATM 8 C C16 OG4 . . . X 4 99.706 44.663 315.236 1 124.68 ? C16 OG4 603 E 1 HETATM 9 C C17 OG4 . . . X 4 100.228 45.726 314.505 1 123.15 ? C17 OG4 603 E 1 HETATM 10 C C18 OG4 . . . X 4 100.132 47.028 314.975 1 115.64 ? C18 OG4 603 E 1 HETATM 11 C C19 OG4 . . . X 4 99.503 47.28 316.187 1 97.33 ? C19 OG4 603 E 1 HETATM 12 C C2 OG4 . . . X 4 96.759 39.806 323.179 1 114.96 ? C2 OG4 603 E 1 HETATM 13 C C20 OG4 . . . X 4 98.974 46.225 316.917 1 113.86 ? C20 OG4 603 E 1 HETATM 14 C C21 OG4 . . . X 4 99.83 43.272 314.679 1 131.49 ? C21 OG4 603 E 1 HETATM 15 C C22 OG4 . . . X 4 100.607 43.305 313.394 1 129.82 ? C22 OG4 603 E 1 HETATM 16 C C23 OG4 . . . X 4 99.757 42.841 312.248 1 139.81 ? C23 OG4 603 E 1 HETATM 17 C C3 OG4 . . . X 4 96.917 41.238 323.426 1 117.41 ? C3 OG4 603 E 1 HETATM 18 C C4 OG4 . . . X 4 98.099 40.507 325.469 1 117.47 ? C4 OG4 603 E 1 HETATM 19 C C5 OG4 . . . X 4 96.165 39.046 322.156 1 112.41 ? C5 OG4 603 E 1 HETATM 20 C C6 OG4 . . . X 4 96.34 37.703 322.484 1 117.76 ? C6 OG4 603 E 1 HETATM 21 C C7 OG4 . . . X 4 95.46 39.588 320.947 1 109.41 ? C7 OG4 603 E 1 HETATM 22 C C8 OG4 . . . X 4 96.417 40.42 320.143 1 101.62 ? C8 OG4 603 E 1 HETATM 23 C C9 OG4 . . . X 4 95.952 41.548 319.476 1 100.45 ? C9 OG4 603 E 1 HETATM 24 N N1 OG4 . . . X 4 97.957 39.241 325.243 1 130.89 ? N1 OG4 603 E 1 HETATM 25 N N2 OG4 . . . X 4 97.597 41.449 324.593 1 113.56 ? N2 OG4 603 E 1 HETATM 26 N N3 OG4 . . . X 4 97.03 37.641 323.674 1 119.24 ? N3 OG4 603 E 1 HETATM 27 N N4 OG4 . . . X 4 98.794 41.001 326.654 1 106.72 ? N4 OG4 603 E 1 HETATM 28 N N5 OG4 . . . X 4 98.488 43.863 317.288 1 123.03 ? N5 OG4 603 E 1 HETATM 29 O O1 OG4 . . . X 4 96.528 42.185 322.745 1 126.95 ? O1 OG4 603 E 1 HETATM 30 O O2 OG4 . . . X 4 100.33 42.65 317.768 1 92.08 ? O2 OG4 603 E 1 HETATM 31 O O3 OG4 . . . X 4 100.044 43.589 311.153 1 139.81 -1 O3 OG4 603 E 1 HETATM 32 O O4 OG4 . . . X 4 98.924 41.94 312.244 1 144.35 ? O4 OG4 603 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #