data_6PFD
#
_model_server_result.job_id            qxITz44Z79qRSh5pfMDveQ 
_model_server_result.datetime_utc      '2024-11-13 11:20:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":601}' 
#
_entry.id    6PFD 
#
_exptl.entry_id    6PFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.05 
_cell.angle_gamma         90 
_cell.entry_id            6PFD 
_cell.length_a            213.033 
_cell.length_b            115.887 
_cell.length_c            220.808 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_858 -x+3,y,-z+3 -1 0 0 0 1 0 0 0 -1 580.789092 0 659.852643 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 292 n n 
PA O2A NDP sing 293 n n 
PA O5B NDP sing 294 n n 
PA O3 NDP sing 295 n n 
O2A HOA2 NDP sing 296 n n 
O5B C5B NDP sing 297 n n 
C5B C4B NDP sing 298 n n 
C5B H51A NDP sing 299 n n 
C5B H52A NDP sing 300 n n 
C4B O4B NDP sing 301 n n 
C4B C3B NDP sing 302 n n 
C4B H4B NDP sing 303 n n 
O4B C1B NDP sing 304 n n 
C3B O3B NDP sing 305 n n 
C3B C2B NDP sing 306 n n 
C3B H3B NDP sing 307 n n 
O3B HO3A NDP sing 308 n n 
C2B O2B NDP sing 309 n n 
C2B C1B NDP sing 310 n n 
C2B H2B NDP sing 311 n n 
O2B P2B NDP sing 312 n n 
C1B N9A NDP sing 313 n n 
C1B H1B NDP sing 314 n n 
N9A C8A NDP sing 315 n y 
N9A C4A NDP sing 316 n y 
C8A N7A NDP doub 317 n y 
C8A H8A NDP sing 318 n n 
N7A C5A NDP sing 319 n y 
C5A C6A NDP sing 320 n y 
C5A C4A NDP doub 321 n y 
C6A N6A NDP sing 322 n n 
C6A N1A NDP doub 323 n y 
N6A H61A NDP sing 324 n n 
N6A H62A NDP sing 325 n n 
N1A C2A NDP sing 326 n y 
C2A N3A NDP doub 327 n y 
C2A H2A NDP sing 328 n n 
N3A C4A NDP sing 329 n y 
O3 PN NDP sing 330 n n 
PN O1N NDP doub 331 n n 
PN O2N NDP sing 332 n n 
PN O5D NDP sing 333 n n 
O2N H21N NDP sing 334 n n 
O5D C5D NDP sing 335 n n 
C5D C4D NDP sing 336 n n 
C5D H51N NDP sing 337 n n 
C5D H52N NDP sing 338 n n 
C4D O4D NDP sing 339 n n 
C4D C3D NDP sing 340 n n 
C4D H4D NDP sing 341 n n 
O4D C1D NDP sing 342 n n 
C3D O3D NDP sing 343 n n 
C3D C2D NDP sing 344 n n 
C3D H3D NDP sing 345 n n 
O3D HO3N NDP sing 346 n n 
C2D O2D NDP sing 347 n n 
C2D C1D NDP sing 348 n n 
C2D H2D NDP sing 349 n n 
O2D HO2N NDP sing 350 n n 
C1D N1N NDP sing 351 n n 
C1D H1D NDP sing 352 n n 
N1N C2N NDP sing 353 n n 
N1N C6N NDP sing 354 n n 
C2N C3N NDP doub 355 n n 
C2N H2N NDP sing 356 n n 
C3N C7N NDP sing 357 n n 
C3N C4N NDP sing 358 n n 
C7N O7N NDP doub 359 n n 
C7N N7N NDP sing 360 n n 
N7N H71N NDP sing 361 n n 
N7N H72N NDP sing 362 n n 
C4N C5N NDP sing 363 n n 
C4N H41N NDP sing 364 n n 
C4N H42N NDP sing 365 n n 
C5N C6N NDP doub 366 n n 
C5N H5N NDP sing 367 n n 
C6N H6N NDP sing 368 n n 
P2B O1X NDP doub 369 n n 
P2B O2X NDP sing 370 n n 
P2B O3X NDP sing 371 n n 
O2X HOP2 NDP sing 372 n n 
O3X HOP3 NDP sing 373 n n 
#
_atom_sites.entry_id                     6PFD 
_atom_sites.fract_transf_matrix[1][1]    0.004694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OEJ A 1 603 603 OEJ T11 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OEJ B 1 603 603 OEJ T11 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OEJ C 1 603 603 OEJ T11 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OEJ D 1 603 603 OEJ T11 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OEJ E 1 603 603 OEJ T11 . 
Y 5 MTX E 1 604 604 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . V 2 297.954 81.298 292.334 1 102.58 ? PA NDP 601 E 1 
HETATM 2 O O1A NDP . . . V 2 298.927 81.607 293.451 1 102.63 ? O1A NDP 601 E 1 
HETATM 3 O O2A NDP . . . V 2 296.662 80.796 292.916 1 95.2 ? O2A NDP 601 E 1 
HETATM 4 O O5B NDP . . . V 2 297.661 82.573 291.531 1 104.94 ? O5B NDP 601 E 1 
HETATM 5 C C5B NDP . . . V 2 298.718 83.302 290.967 1 113.77 ? C5B NDP 601 E 1 
HETATM 6 C C4B NDP . . . V 2 298.421 84.63 290.407 1 117.55 ? C4B NDP 601 E 1 
HETATM 7 O O4B NDP . . . V 2 298.211 85.569 291.438 1 117.86 ? O4B NDP 601 E 1 
HETATM 8 C C3B NDP . . . V 2 299.541 85.169 289.631 1 124.4 ? C3B NDP 601 E 1 
HETATM 9 O O3B NDP . . . V 2 299.546 84.697 288.329 1 103.81 ? O3B NDP 601 E 1 
HETATM 10 C C2B NDP . . . V 2 299.298 86.591 289.682 1 128.74 ? C2B NDP 601 E 1 
HETATM 11 O O2B NDP . . . V 2 298.286 86.96 288.784 1 112.67 ? O2B NDP 601 E 1 
HETATM 12 C C1B NDP . . . V 2 298.812 86.791 291.038 1 131.7 ? C1B NDP 601 E 1 
HETATM 13 N N9A NDP . . . V 2 299.869 87.148 291.926 1 144.39 ? N9A NDP 601 E 1 
HETATM 14 C C8A NDP . . . V 2 300.593 86.296 292.696 1 132.09 ? C8A NDP 601 E 1 
HETATM 15 N N7A NDP . . . V 2 301.497 86.994 293.412 1 132.14 ? N7A NDP 601 E 1 
HETATM 16 C C5A NDP . . . V 2 301.351 88.328 293.106 1 145.1 ? C5A NDP 601 E 1 
HETATM 17 C C6A NDP . . . V 2 301.994 89.521 293.524 1 130.72 ? C6A NDP 601 E 1 
HETATM 18 N N6A NDP . . . V 2 303.094 89.452 294.518 1 129.7 ? N6A NDP 601 E 1 
HETATM 19 N N1A NDP . . . V 2 301.607 90.724 293.018 1 120.98 ? N1A NDP 601 E 1 
HETATM 20 C C2A NDP . . . V 2 300.598 90.765 292.107 1 130.62 ? C2A NDP 601 E 1 
HETATM 21 N N3A NDP . . . V 2 299.96 89.67 291.682 1 133.29 ? N3A NDP 601 E 1 
HETATM 22 C C4A NDP . . . V 2 300.318 88.423 292.168 1 144.92 ? C4A NDP 601 E 1 
HETATM 23 O O3 NDP . . . V 2 298.56 80.203 291.342 1 120.75 ? O3 NDP 601 E 1 
HETATM 24 P PN NDP . . . V 2 299.167 78.812 291.827 1 131.52 ? PN NDP 601 E 1 
HETATM 25 O O1N NDP . . . V 2 299.785 78.065 290.635 1 116.35 ? O1N NDP 601 E 1 
HETATM 26 O O2N NDP . . . V 2 300.249 79.058 292.856 1 112.99 ? O2N NDP 601 E 1 
HETATM 27 O O5D NDP . . . V 2 297.982 77.893 292.448 1 118.46 ? O5D NDP 601 E 1 
HETATM 28 C C5D NDP . . . V 2 297.192 77.103 291.595 1 112.16 ? C5D NDP 601 E 1 
HETATM 29 C C4D NDP . . . V 2 297.161 75.669 291.84 1 130.66 ? C4D NDP 601 E 1 
HETATM 30 O O4D NDP . . . V 2 297.153 75.427 293.245 1 138.79 ? O4D NDP 601 E 1 
HETATM 31 C C3D NDP . . . V 2 295.942 75.051 291.298 1 130.91 ? C3D NDP 601 E 1 
HETATM 32 O O3D NDP . . . V 2 296.226 73.773 290.827 1 128.48 ? O3D NDP 601 E 1 
HETATM 33 C C2D NDP . . . V 2 295.065 74.947 292.413 1 127.31 ? C2D NDP 601 E 1 
HETATM 34 O O2D NDP . . . V 2 294.202 73.864 292.241 1 115.34 ? O2D NDP 601 E 1 
HETATM 35 C C1D NDP . . . V 2 295.991 74.73 293.547 1 139.58 ? C1D NDP 601 E 1 
HETATM 36 N N1N NDP . . . V 2 295.412 75.183 294.777 1 131.41 ? N1N NDP 601 E 1 
HETATM 37 C C2N NDP . . . V 2 295.378 74.332 295.817 1 115.28 ? C2N NDP 601 E 1 
HETATM 38 C C3N NDP . . . V 2 294.824 74.719 297.046 1 108.25 ? C3N NDP 601 E 1 
HETATM 39 C C7N NDP . . . V 2 294.808 73.72 298.189 1 107.76 ? C7N NDP 601 E 1 
HETATM 40 O O7N NDP . . . V 2 294.469 74.098 299.322 1 105.84 ? O7N NDP 601 E 1 
HETATM 41 N N7N NDP . . . V 2 295.178 72.348 297.981 1 102.1 ? N7N NDP 601 E 1 
HETATM 42 C C4N NDP . . . V 2 294.298 76.014 297.199 1 94.39 ? C4N NDP 601 E 1 
HETATM 43 C C5N NDP . . . V 2 294.352 76.874 296.095 1 102.18 ? C5N NDP 601 E 1 
HETATM 44 C C6N NDP . . . V 2 294.91 76.452 294.889 1 118.35 ? C6N NDP 601 E 1 
HETATM 45 P P2B NDP . . . V 2 298.546 87.959 287.611 1 105.56 ? P2B NDP 601 E 1 
HETATM 46 O O1X NDP . . . V 2 299.617 87.37 286.674 1 103.12 ? O1X NDP 601 E 1 
HETATM 47 O O2X NDP . . . V 2 297.296 88.166 286.86 1 109.81 ? O2X NDP 601 E 1 
HETATM 48 O O3X NDP . . . V 2 299.003 89.283 288.135 1 115.72 ? O3X NDP 601 E 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#