data_6PFD # _model_server_result.job_id wxKZRlppT8weNN4q61Lbyg _model_server_result.datetime_utc '2024-11-28 15:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":603}' # _entry.id 6PFD # _exptl.entry_id 6PFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzene-1,4-dicarboxylic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 6PFD _cell.length_a 213.033 _cell.length_b 115.887 _cell.length_c 220.808 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M 1 1 C,D,N,O,P,Q,R,S,T,U 2 1 E,V,W,X,Y 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_858 -x+3,y,-z+3 -1 0 0 0 1 0 0 0 -1 580.789092 0 659.852643 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N # _chem_comp.formula 'C22 H17 N5 O6' _chem_comp.formula_weight 447.4 _chem_comp.id OEJ _chem_comp.mon_nstd_flag . _chem_comp.name '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzene-1,4-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C4 OEJ sing 374 n n N1 C4 OEJ doub 375 n n N1 C1 OEJ sing 376 n n C4 N2 OEJ sing 377 n n N3 C1 OEJ sing 378 n y N3 C6 OEJ sing 379 n y C1 C2 OEJ doub 380 n y O2 C14 OEJ doub 381 n n N2 C3 OEJ sing 382 n n C6 C5 OEJ doub 383 n y C12 C13 OEJ doub 384 n y C12 C11 OEJ sing 385 n y C2 C3 OEJ sing 386 n n C2 C5 OEJ sing 387 n y C13 C8 OEJ sing 388 n y O4 C21 OEJ doub 389 n n C3 O1 OEJ doub 390 n n C14 C11 OEJ sing 391 n n C14 N5 OEJ sing 392 n n C5 C7 OEJ sing 393 n n C11 C10 OEJ doub 394 n y C21 O3 OEJ sing 395 n n C21 C20 OEJ sing 396 n n C8 C7 OEJ sing 397 n n C8 C9 OEJ doub 398 n y C20 C19 OEJ doub 399 n y C20 C15 OEJ sing 400 n y N5 C15 OEJ sing 401 n n C19 C18 OEJ sing 402 n y C15 C16 OEJ doub 403 n y C10 C9 OEJ sing 404 n y C18 C17 OEJ doub 405 n y C16 C17 OEJ sing 406 n y C17 C22 OEJ sing 407 n n O5 C22 OEJ doub 408 n n C22 O6 OEJ sing 409 n n C13 H1 OEJ sing 410 n n C6 H2 OEJ sing 411 n n C7 H3 OEJ sing 412 n n C7 H4 OEJ sing 413 n n C10 H5 OEJ sing 414 n n C12 H6 OEJ sing 415 n n C16 H7 OEJ sing 416 n n C18 H8 OEJ sing 417 n n C19 H9 OEJ sing 418 n n C9 H10 OEJ sing 419 n n N2 H11 OEJ sing 420 n n N3 H12 OEJ sing 421 n n N4 H13 OEJ sing 422 n n N4 H14 OEJ sing 423 n n N5 H15 OEJ sing 424 n n O3 H16 OEJ sing 425 n n O6 H17 OEJ sing 426 n n # _atom_sites.entry_id 6PFD _atom_sites.fract_transf_matrix[1][1] 0.004694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEJ A 1 603 603 OEJ T11 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEJ B 1 603 603 OEJ T11 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEJ C 1 603 603 OEJ T11 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEJ D 1 603 603 OEJ T11 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEJ E 1 603 603 OEJ T11 . Y 5 MTX E 1 604 604 MTX MTX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 OEJ . . . L 4 215.264 116.312 243.281 1 114.45 ? C14 OEJ 603 B 1 HETATM 2 C C13 OEJ . . . L 4 218.461 117.039 241.278 1 88.31 ? C13 OEJ 603 B 1 HETATM 3 C C1 OEJ . . . L 4 222.683 116.49 241.18 1 121.23 ? C1 OEJ 603 B 1 HETATM 4 C C6 OEJ . . . L 4 221.609 117.442 239.451 1 112.92 ? C6 OEJ 603 B 1 HETATM 5 C C5 OEJ . . . L 4 220.848 116.369 239.857 1 123.77 ? C5 OEJ 603 B 1 HETATM 6 C C4 OEJ . . . L 4 223.372 115.204 242.918 1 96.79 ? C4 OEJ 603 B 1 HETATM 7 C C3 OEJ . . . L 4 221.297 114.606 241.843 1 112.84 ? C3 OEJ 603 B 1 HETATM 8 C C2 OEJ . . . L 4 221.544 115.763 240.954 1 123.12 ? C2 OEJ 603 B 1 HETATM 9 C C7 OEJ . . . L 4 219.538 115.916 239.257 1 104.6 ? C7 OEJ 603 B 1 HETATM 10 C C10 OEJ . . . L 4 216.343 115.202 241.264 1 108.31 ? C10 OEJ 603 B 1 HETATM 11 C C11 OEJ . . . L 4 216.365 116.216 242.254 1 108.9 ? C11 OEJ 603 B 1 HETATM 12 C C12 OEJ . . . L 4 217.439 117.136 242.247 1 92.43 ? C12 OEJ 603 B 1 HETATM 13 C C15 OEJ . . . L 4 212.928 115.366 243.653 1 129.57 ? C15 OEJ 603 B 1 HETATM 14 C C16 OEJ . . . L 4 212.707 114.152 244.353 1 116.71 ? C16 OEJ 603 B 1 HETATM 15 C C17 OEJ . . . L 4 211.494 113.888 245.027 1 131.35 ? C17 OEJ 603 B 1 HETATM 16 C C18 OEJ . . . L 4 210.476 114.861 244.995 1 129.41 ? C18 OEJ 603 B 1 HETATM 17 C C19 OEJ . . . L 4 210.673 116.069 244.304 1 136.07 ? C19 OEJ 603 B 1 HETATM 18 C C20 OEJ . . . L 4 211.884 116.349 243.626 1 147.72 ? C20 OEJ 603 B 1 HETATM 19 C C21 OEJ . . . L 4 211.987 117.68 242.911 1 131.26 ? C21 OEJ 603 B 1 HETATM 20 C C22 OEJ . . . L 4 211.279 112.595 245.768 1 118.78 ? C22 OEJ 603 B 1 HETATM 21 C C8 OEJ . . . L 4 218.432 116.027 240.295 1 95.4 ? C8 OEJ 603 B 1 HETATM 22 C C9 OEJ . . . L 4 217.366 115.106 240.297 1 104.42 ? C9 OEJ 603 B 1 HETATM 23 N N1 OEJ . . . L 4 223.632 116.238 242.161 1 115.59 ? N1 OEJ 603 B 1 HETATM 24 N N2 OEJ . . . L 4 222.237 114.388 242.784 1 94.77 ? N2 OEJ 603 B 1 HETATM 25 N N3 OEJ . . . L 4 222.725 117.512 240.262 1 113.48 ? N3 OEJ 603 B 1 HETATM 26 N N4 OEJ . . . L 4 224.178 114.775 243.951 1 80.74 ? N4 OEJ 603 B 1 HETATM 27 N N5 OEJ . . . L 4 214.175 115.572 242.983 1 122.32 ? N5 OEJ 603 B 1 HETATM 28 O O1 OEJ . . . L 4 220.306 113.885 241.735 1 112.17 ? O1 OEJ 603 B 1 HETATM 29 O O2 OEJ . . . L 4 215.392 117.015 244.285 1 98.87 ? O2 OEJ 603 B 1 HETATM 30 O O3 OEJ . . . L 4 210.794 118.147 242.438 1 97.62 -1 O3 OEJ 603 B 1 HETATM 31 O O4 OEJ . . . L 4 213.04 118.298 242.766 1 138.48 ? O4 OEJ 603 B 1 HETATM 32 O O5 OEJ . . . L 4 212.148 111.723 245.81 1 111.83 ? O5 OEJ 603 B 1 HETATM 33 O O6 OEJ . . . L 4 210.062 112.465 246.373 1 101.61 -1 O6 OEJ 603 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #