data_6PFD
#
_model_server_result.job_id            A3CKL_6wDGyDYe9I-ohGmQ 
_model_server_result.datetime_utc      '2024-11-28 15:32:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":603}' 
#
_entry.id    6PFD 
#
_exptl.entry_id    6PFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              447.4 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzene-1,4-dicarboxylic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.05 
_cell.angle_gamma         90 
_cell.entry_id            6PFD 
_cell.length_a            213.033 
_cell.length_b            115.887 
_cell.length_c            220.808 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,D,N,O,P,Q,R,S,T,U 2 1 
E,V,W,X,Y 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_858 -x+3,y,-z+3 -1 0 0 0 1 0 0 0 -1 580.789092 0 659.852643 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C22 H17 N5 O6' 
_chem_comp.formula_weight    447.4 
_chem_comp.id                OEJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)benzene-1,4-dicarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C4 OEJ sing 374 n n 
N1 C4 OEJ doub 375 n n 
N1 C1 OEJ sing 376 n n 
C4 N2 OEJ sing 377 n n 
N3 C1 OEJ sing 378 n y 
N3 C6 OEJ sing 379 n y 
C1 C2 OEJ doub 380 n y 
O2 C14 OEJ doub 381 n n 
N2 C3 OEJ sing 382 n n 
C6 C5 OEJ doub 383 n y 
C12 C13 OEJ doub 384 n y 
C12 C11 OEJ sing 385 n y 
C2 C3 OEJ sing 386 n n 
C2 C5 OEJ sing 387 n y 
C13 C8 OEJ sing 388 n y 
O4 C21 OEJ doub 389 n n 
C3 O1 OEJ doub 390 n n 
C14 C11 OEJ sing 391 n n 
C14 N5 OEJ sing 392 n n 
C5 C7 OEJ sing 393 n n 
C11 C10 OEJ doub 394 n y 
C21 O3 OEJ sing 395 n n 
C21 C20 OEJ sing 396 n n 
C8 C7 OEJ sing 397 n n 
C8 C9 OEJ doub 398 n y 
C20 C19 OEJ doub 399 n y 
C20 C15 OEJ sing 400 n y 
N5 C15 OEJ sing 401 n n 
C19 C18 OEJ sing 402 n y 
C15 C16 OEJ doub 403 n y 
C10 C9 OEJ sing 404 n y 
C18 C17 OEJ doub 405 n y 
C16 C17 OEJ sing 406 n y 
C17 C22 OEJ sing 407 n n 
O5 C22 OEJ doub 408 n n 
C22 O6 OEJ sing 409 n n 
C13 H1 OEJ sing 410 n n 
C6 H2 OEJ sing 411 n n 
C7 H3 OEJ sing 412 n n 
C7 H4 OEJ sing 413 n n 
C10 H5 OEJ sing 414 n n 
C12 H6 OEJ sing 415 n n 
C16 H7 OEJ sing 416 n n 
C18 H8 OEJ sing 417 n n 
C19 H9 OEJ sing 418 n n 
C9 H10 OEJ sing 419 n n 
N2 H11 OEJ sing 420 n n 
N3 H12 OEJ sing 421 n n 
N4 H13 OEJ sing 422 n n 
N4 H14 OEJ sing 423 n n 
N5 H15 OEJ sing 424 n n 
O3 H16 OEJ sing 425 n n 
O6 H17 OEJ sing 426 n n 
#
_atom_sites.entry_id                     6PFD 
_atom_sites.fract_transf_matrix[1][1]    0.004694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OEJ A 1 603 603 OEJ T11 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OEJ B 1 603 603 OEJ T11 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OEJ C 1 603 603 OEJ T11 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OEJ D 1 603 603 OEJ T11 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OEJ E 1 603 603 OEJ T11 . 
Y 5 MTX E 1 604 604 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 OEJ . . . P 4 267.591 42.843 267.958 1 79.68 ? C14 OEJ 603 C 1 
HETATM 2 C C13 OEJ . . . P 4 269.685 44.166 265.049 1 88.91 ? C13 OEJ 603 C 1 
HETATM 3 C C1 OEJ . . . P 4 269.496 46.313 261.427 1 113.13 ? C1 OEJ 603 C 1 
HETATM 4 C C6 OEJ . . . P 4 271.464 45.64 262.272 1 75.51 ? C6 OEJ 603 C 1 
HETATM 5 C C5 OEJ . . . P 4 270.728 46.133 263.323 1 79.38 ? C5 OEJ 603 C 1 
HETATM 6 C C4 OEJ . . . P 4 267.412 47.116 261.04 1 90.89 ? C4 OEJ 603 C 1 
HETATM 7 C C3 OEJ . . . P 4 268.233 47.179 263.312 1 97.43 ? C3 OEJ 603 C 1 
HETATM 8 C C2 OEJ . . . P 4 269.472 46.568 262.774 1 100.18 ? C2 OEJ 603 C 1 
HETATM 9 C C7 OEJ . . . P 4 271.181 46.196 264.762 1 76.97 ? C7 OEJ 603 C 1 
HETATM 10 C C10 OEJ . . . P 4 269.101 44.871 267.7 1 83.63 ? C10 OEJ 603 C 1 
HETATM 11 C C11 OEJ . . . P 4 268.521 43.702 267.148 1 71.58 ? C11 OEJ 603 C 1 
HETATM 12 C C12 OEJ . . . P 4 268.818 43.359 265.811 1 70.41 ? C12 OEJ 603 C 1 
HETATM 13 C C15 OEJ . . . P 4 266.876 42.539 270.371 1 89.87 ? C15 OEJ 603 C 1 
HETATM 14 C C16 OEJ . . . P 4 265.863 43.323 270.98 1 86.61 ? C16 OEJ 603 C 1 
HETATM 15 C C17 OEJ . . . P 4 265.106 42.847 272.072 1 130.71 ? C17 OEJ 603 C 1 
HETATM 16 C C18 OEJ . . . P 4 265.381 41.56 272.573 1 133.38 ? C18 OEJ 603 C 1 
HETATM 17 C C19 OEJ . . . P 4 266.389 40.772 271.991 1 121.31 ? C19 OEJ 603 C 1 
HETATM 18 C C20 OEJ . . . P 4 267.158 41.238 270.9 1 106.84 ? C20 OEJ 603 C 1 
HETATM 19 C C21 OEJ . . . P 4 268.212 40.303 270.351 1 108.71 ? C21 OEJ 603 C 1 
HETATM 20 C C22 OEJ . . . P 4 264.024 43.682 272.706 1 135.2 ? C22 OEJ 603 C 1 
HETATM 21 C C8 OEJ . . . P 4 270.264 45.328 265.604 1 87.99 ? C8 OEJ 603 C 1 
HETATM 22 C C9 OEJ . . . P 4 269.966 45.681 266.935 1 79.73 ? C9 OEJ 603 C 1 
HETATM 23 N N1 OEJ . . . P 4 268.48 46.576 260.519 1 109.63 ? N1 OEJ 603 C 1 
HETATM 24 N N2 OEJ . . . P 4 267.265 47.422 262.404 1 82.56 ? N2 OEJ 603 C 1 
HETATM 25 N N3 OEJ . . . P 4 270.71 45.75 261.122 1 103.42 ? N3 OEJ 603 C 1 
HETATM 26 N N4 OEJ . . . P 4 266.291 47.457 260.315 1 85.53 ? N4 OEJ 603 C 1 
HETATM 27 N N5 OEJ . . . P 4 267.612 43.096 269.281 1 86.69 ? N5 OEJ 603 C 1 
HETATM 28 O O1 OEJ . . . P 4 268.086 47.455 264.501 1 99.01 ? O1 OEJ 603 C 1 
HETATM 29 O O2 OEJ . . . P 4 266.898 41.985 267.409 1 82.91 ? O2 OEJ 603 C 1 
HETATM 30 O O3 OEJ . . . P 4 268.778 39.501 271.3 1 96.87 -1 O3 OEJ 603 C 1 
HETATM 31 O O4 OEJ . . . P 4 268.525 40.25 269.163 1 113.06 ? O4 OEJ 603 C 1 
HETATM 32 O O5 OEJ . . . P 4 263.284 43.226 273.579 1 124.38 ? O5 OEJ 603 C 1 
HETATM 33 O O6 OEJ . . . P 4 263.939 44.966 272.246 1 120.27 -1 O6 OEJ 603 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#