data_6PFE
#
_model_server_result.job_id            kQ1ypsQ63j1f-EC-3ozFNQ 
_model_server_result.datetime_utc      '2024-11-25 16:53:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":601}' 
#
_entry.id    6PFE 
#
_exptl.entry_id    6PFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95 
_cell.angle_gamma         90 
_cell.entry_id            6PFE 
_cell.length_a            212.859 
_cell.length_b            115.641 
_cell.length_c            219.899 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 
C,E,N,O,P,Q,V,W,X,Y,BA,DA 2 1 
D,R,S,T,U,CA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -57.496382 0 657.186654 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
? 2 V N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 294 n n 
PA O2A NDP sing 295 n n 
PA O5B NDP sing 296 n n 
PA O3 NDP sing 297 n n 
O2A HOA2 NDP sing 298 n n 
O5B C5B NDP sing 299 n n 
C5B C4B NDP sing 300 n n 
C5B H51A NDP sing 301 n n 
C5B H52A NDP sing 302 n n 
C4B O4B NDP sing 303 n n 
C4B C3B NDP sing 304 n n 
C4B H4B NDP sing 305 n n 
O4B C1B NDP sing 306 n n 
C3B O3B NDP sing 307 n n 
C3B C2B NDP sing 308 n n 
C3B H3B NDP sing 309 n n 
O3B HO3A NDP sing 310 n n 
C2B O2B NDP sing 311 n n 
C2B C1B NDP sing 312 n n 
C2B H2B NDP sing 313 n n 
O2B P2B NDP sing 314 n n 
C1B N9A NDP sing 315 n n 
C1B H1B NDP sing 316 n n 
N9A C8A NDP sing 317 n y 
N9A C4A NDP sing 318 n y 
C8A N7A NDP doub 319 n y 
C8A H8A NDP sing 320 n n 
N7A C5A NDP sing 321 n y 
C5A C6A NDP sing 322 n y 
C5A C4A NDP doub 323 n y 
C6A N6A NDP sing 324 n n 
C6A N1A NDP doub 325 n y 
N6A H61A NDP sing 326 n n 
N6A H62A NDP sing 327 n n 
N1A C2A NDP sing 328 n y 
C2A N3A NDP doub 329 n y 
C2A H2A NDP sing 330 n n 
N3A C4A NDP sing 331 n y 
O3 PN NDP sing 332 n n 
PN O1N NDP doub 333 n n 
PN O2N NDP sing 334 n n 
PN O5D NDP sing 335 n n 
O2N H21N NDP sing 336 n n 
O5D C5D NDP sing 337 n n 
C5D C4D NDP sing 338 n n 
C5D H51N NDP sing 339 n n 
C5D H52N NDP sing 340 n n 
C4D O4D NDP sing 341 n n 
C4D C3D NDP sing 342 n n 
C4D H4D NDP sing 343 n n 
O4D C1D NDP sing 344 n n 
C3D O3D NDP sing 345 n n 
C3D C2D NDP sing 346 n n 
C3D H3D NDP sing 347 n n 
O3D HO3N NDP sing 348 n n 
C2D O2D NDP sing 349 n n 
C2D C1D NDP sing 350 n n 
C2D H2D NDP sing 351 n n 
O2D HO2N NDP sing 352 n n 
C1D N1N NDP sing 353 n n 
C1D H1D NDP sing 354 n n 
N1N C2N NDP sing 355 n n 
N1N C6N NDP sing 356 n n 
C2N C3N NDP doub 357 n n 
C2N H2N NDP sing 358 n n 
C3N C7N NDP sing 359 n n 
C3N C4N NDP sing 360 n n 
C7N O7N NDP doub 361 n n 
C7N N7N NDP sing 362 n n 
N7N H71N NDP sing 363 n n 
N7N H72N NDP sing 364 n n 
C4N C5N NDP sing 365 n n 
C4N H41N NDP sing 366 n n 
C4N H42N NDP sing 367 n n 
C5N C6N NDP doub 368 n n 
C5N H5N NDP sing 369 n n 
C6N H6N NDP sing 370 n n 
P2B O1X NDP doub 371 n n 
P2B O2X NDP sing 372 n n 
P2B O3X NDP sing 373 n n 
O2X HOP2 NDP sing 374 n n 
O3X HOP3 NDP sing 375 n n 
#
_atom_sites.entry_id                     6PFE 
_atom_sites.fract_transf_matrix[1][1]    0.004698 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000411 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OEA A 1 603 603 OEA T12 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OEA B 1 603 603 OEA T12 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OEA C 1 603 603 OEA T12 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OEA D 1 603 603 OEA T12 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OEA E 1 603 603 OEA T12 . 
Y 5 MTX E 1 604 604 MTX MTX . 
Z 6 HOH A 1 701 29 HOH HOH . 
Z 6 HOH A 2 702 21 HOH HOH . 
Z 6 HOH A 3 703 40 HOH HOH . 
Z 6 HOH A 4 704 17 HOH HOH . 
Z 6 HOH A 5 705 15 HOH HOH . 
Z 6 HOH A 6 706 2 HOH HOH . 
Z 6 HOH A 7 707 20 HOH HOH . 
Z 6 HOH A 8 708 25 HOH HOH . 
Z 6 HOH A 9 709 3 HOH HOH . 
AA 6 HOH B 1 701 18 HOH HOH . 
AA 6 HOH B 2 702 31 HOH HOH . 
AA 6 HOH B 3 703 23 HOH HOH . 
AA 6 HOH B 4 704 16 HOH HOH . 
AA 6 HOH B 5 705 19 HOH HOH . 
AA 6 HOH B 6 706 8 HOH HOH . 
AA 6 HOH B 7 707 27 HOH HOH . 
AA 6 HOH B 8 708 4 HOH HOH . 
AA 6 HOH B 9 709 11 HOH HOH . 
AA 6 HOH B 10 710 30 HOH HOH . 
AA 6 HOH B 11 711 13 HOH HOH . 
AA 6 HOH B 12 712 1 HOH HOH . 
AA 6 HOH B 13 713 14 HOH HOH . 
AA 6 HOH B 14 714 34 HOH HOH . 
BA 6 HOH C 1 701 33 HOH HOH . 
BA 6 HOH C 2 702 43 HOH HOH . 
BA 6 HOH C 3 703 35 HOH HOH . 
BA 6 HOH C 4 704 39 HOH HOH . 
BA 6 HOH C 5 705 9 HOH HOH . 
CA 6 HOH D 1 701 22 HOH HOH . 
CA 6 HOH D 2 702 42 HOH HOH . 
CA 6 HOH D 3 703 5 HOH HOH . 
DA 6 HOH E 1 701 26 HOH HOH . 
DA 6 HOH E 2 702 32 HOH HOH . 
DA 6 HOH E 3 703 28 HOH HOH . 
DA 6 HOH E 4 704 36 HOH HOH . 
DA 6 HOH E 5 705 12 HOH HOH . 
DA 6 HOH E 6 706 10 HOH HOH . 
DA 6 HOH E 7 707 41 HOH HOH . 
DA 6 HOH E 8 708 24 HOH HOH . 
DA 6 HOH E 9 709 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . R 2 -21.322 139.64 291.185 1 69.08 ? PA NDP 601 D 1 
HETATM 2 O O1A NDP . . . R 2 -20.424 139.829 292.391 1 77.64 ? O1A NDP 601 D 1 
HETATM 3 O O2A NDP . . . R 2 -22.622 139.042 291.631 1 64.47 ? O2A NDP 601 D 1 
HETATM 4 O O5B NDP . . . R 2 -21.601 140.996 290.523 1 73.95 ? O5B NDP 601 D 1 
HETATM 5 C C5B NDP . . . R 2 -20.544 141.752 289.998 1 71.55 ? C5B NDP 601 D 1 
HETATM 6 C C4B NDP . . . R 2 -20.881 143.008 289.313 1 73.39 ? C4B NDP 601 D 1 
HETATM 7 O O4B NDP . . . R 2 -21.197 144.017 290.248 1 77.38 ? O4B NDP 601 D 1 
HETATM 8 C C3B NDP . . . R 2 -19.749 143.545 288.56 1 71.76 ? C3B NDP 601 D 1 
HETATM 9 O O3B NDP . . . R 2 -19.653 142.963 287.309 1 79.26 ? O3B NDP 601 D 1 
HETATM 10 C C2B NDP . . . R 2 -20.089 144.941 288.468 1 73.09 ? C2B NDP 601 D 1 
HETATM 11 O O2B NDP . . . R 2 -21.108 145.142 287.532 1 78.87 ? O2B NDP 601 D 1 
HETATM 12 C C1B NDP . . . R 2 -20.624 145.228 289.785 1 80.11 ? C1B NDP 601 D 1 
HETATM 13 N N9A NDP . . . R 2 -19.582 145.662 290.652 1 95.76 ? N9A NDP 601 D 1 
HETATM 14 C C8A NDP . . . R 2 -18.814 144.871 291.442 1 91.87 ? C8A NDP 601 D 1 
HETATM 15 N N7A NDP . . . R 2 -17.938 145.637 292.123 1 96.91 ? N7A NDP 601 D 1 
HETATM 16 C C5A NDP . . . R 2 -18.143 146.95 291.769 1 93.45 ? C5A NDP 601 D 1 
HETATM 17 C C6A NDP . . . R 2 -17.552 148.187 292.134 1 95.87 ? C6A NDP 601 D 1 
HETATM 18 N N6A NDP . . . R 2 -16.441 148.211 293.119 1 101.45 ? N6A NDP 601 D 1 
HETATM 19 N N1A NDP . . . R 2 -17.998 149.349 291.586 1 95.56 ? N1A NDP 601 D 1 
HETATM 20 C C2A NDP . . . R 2 -19.015 149.306 290.685 1 97.19 ? C2A NDP 601 D 1 
HETATM 21 N N3A NDP . . . R 2 -19.605 148.169 290.311 1 95.78 ? N3A NDP 601 D 1 
HETATM 22 C C4A NDP . . . R 2 -19.187 146.962 290.84 1 93.03 ? C4A NDP 601 D 1 
HETATM 23 O O3 NDP . . . R 2 -20.649 138.662 290.125 1 63.49 ? O3 NDP 601 D 1 
HETATM 24 P PN NDP . . . R 2 -20.047 137.257 290.563 1 77.03 ? PN NDP 601 D 1 
HETATM 25 O O1N NDP . . . R 2 -19.397 136.562 289.358 1 65.8 ? O1N NDP 601 D 1 
HETATM 26 O O2N NDP . . . R 2 -18.987 137.479 291.618 1 90.24 ? O2N NDP 601 D 1 
HETATM 27 O O5D NDP . . . R 2 -21.23 136.326 291.164 1 72.04 ? O5D NDP 601 D 1 
HETATM 28 C C5D NDP . . . R 2 -22.042 135.577 290.297 1 78.15 ? C5D NDP 601 D 1 
HETATM 29 C C4D NDP . . . R 2 -22.104 134.141 290.523 1 78.91 ? C4D NDP 601 D 1 
HETATM 30 O O4D NDP . . . R 2 -22.177 133.882 291.923 1 82.82 ? O4D NDP 601 D 1 
HETATM 31 C C3D NDP . . . R 2 -23.306 133.54 289.935 1 69.74 ? C3D NDP 601 D 1 
HETATM 32 O O3D NDP . . . R 2 -23.023 132.223 289.59 1 62.15 ? O3D NDP 601 D 1 
HETATM 33 C C2D NDP . . . R 2 -24.241 133.556 291.007 1 72.73 ? C2D NDP 601 D 1 
HETATM 34 O O2D NDP . . . R 2 -25.236 132.597 290.807 1 69.16 ? O2D NDP 601 D 1 
HETATM 35 C C1D NDP . . . R 2 -23.376 133.221 292.159 1 76.02 ? C1D NDP 601 D 1 
HETATM 36 N N1N NDP . . . R 2 -23.953 133.626 293.406 1 68.9 ? N1N NDP 601 D 1 
HETATM 37 C C2N NDP . . . R 2 -24.037 132.717 294.393 1 61.74 ? C2N NDP 601 D 1 
HETATM 38 C C3N NDP . . . R 2 -24.585 133.054 295.639 1 69.01 ? C3N NDP 601 D 1 
HETATM 39 C C7N NDP . . . R 2 -24.66 131.992 296.722 1 77.77 ? C7N NDP 601 D 1 
HETATM 40 O O7N NDP . . . R 2 -25.019 132.318 297.865 1 77.37 ? O7N NDP 601 D 1 
HETATM 41 N N7N NDP . . . R 2 -24.323 130.622 296.452 1 75.38 ? N7N NDP 601 D 1 
HETATM 42 C C4N NDP . . . R 2 -25.053 134.361 295.866 1 68.25 ? C4N NDP 601 D 1 
HETATM 43 C C5N NDP . . . R 2 -24.947 135.283 294.817 1 72.88 ? C5N NDP 601 D 1 
HETATM 44 C C6N NDP . . . R 2 -24.396 134.908 293.593 1 75.91 ? C6N NDP 601 D 1 
HETATM 45 P P2B NDP . . . R 2 -20.921 146.11 286.323 1 86.29 ? P2B NDP 601 D 1 
HETATM 46 O O1X NDP . . . R 2 -20.281 145.322 285.162 1 80.15 ? O1X NDP 601 D 1 
HETATM 47 O O2X NDP . . . R 2 -22.237 146.642 285.924 1 72.64 ? O2X NDP 601 D 1 
HETATM 48 O O3X NDP . . . R 2 -20.041 147.259 286.698 1 89.96 ? O3X NDP 601 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#