data_6PFE # _model_server_result.job_id 2KhSZUVLqlN-RmvF4k17ow _model_server_result.datetime_utc '2024-11-25 16:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 6PFE # _exptl.entry_id 6PFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95 _cell.angle_gamma 90 _cell.entry_id 6PFE _cell.length_a 212.859 _cell.length_b 115.641 _cell.length_c 219.899 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 C,E,N,O,P,Q,V,W,X,Y,BA,DA 2 1 D,R,S,T,U,CA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -57.496382 0 657.186654 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 6PFE _atom_sites.fract_transf_matrix[1][1] 0.004698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000411 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEA A 1 603 603 OEA T12 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEA B 1 603 603 OEA T12 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEA C 1 603 603 OEA T12 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEA D 1 603 603 OEA T12 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEA E 1 603 603 OEA T12 . Y 5 MTX E 1 604 604 MTX MTX . Z 6 HOH A 1 701 29 HOH HOH . Z 6 HOH A 2 702 21 HOH HOH . Z 6 HOH A 3 703 40 HOH HOH . Z 6 HOH A 4 704 17 HOH HOH . Z 6 HOH A 5 705 15 HOH HOH . Z 6 HOH A 6 706 2 HOH HOH . Z 6 HOH A 7 707 20 HOH HOH . Z 6 HOH A 8 708 25 HOH HOH . Z 6 HOH A 9 709 3 HOH HOH . AA 6 HOH B 1 701 18 HOH HOH . AA 6 HOH B 2 702 31 HOH HOH . AA 6 HOH B 3 703 23 HOH HOH . AA 6 HOH B 4 704 16 HOH HOH . AA 6 HOH B 5 705 19 HOH HOH . AA 6 HOH B 6 706 8 HOH HOH . AA 6 HOH B 7 707 27 HOH HOH . AA 6 HOH B 8 708 4 HOH HOH . AA 6 HOH B 9 709 11 HOH HOH . AA 6 HOH B 10 710 30 HOH HOH . AA 6 HOH B 11 711 13 HOH HOH . AA 6 HOH B 12 712 1 HOH HOH . AA 6 HOH B 13 713 14 HOH HOH . AA 6 HOH B 14 714 34 HOH HOH . BA 6 HOH C 1 701 33 HOH HOH . BA 6 HOH C 2 702 43 HOH HOH . BA 6 HOH C 3 703 35 HOH HOH . BA 6 HOH C 4 704 39 HOH HOH . BA 6 HOH C 5 705 9 HOH HOH . CA 6 HOH D 1 701 22 HOH HOH . CA 6 HOH D 2 702 42 HOH HOH . CA 6 HOH D 3 703 5 HOH HOH . DA 6 HOH E 1 701 26 HOH HOH . DA 6 HOH E 2 702 32 HOH HOH . DA 6 HOH E 3 703 28 HOH HOH . DA 6 HOH E 4 704 36 HOH HOH . DA 6 HOH E 5 705 12 HOH HOH . DA 6 HOH E 6 706 10 HOH HOH . DA 6 HOH E 7 707 41 HOH HOH . DA 6 HOH E 8 708 24 HOH HOH . DA 6 HOH E 9 709 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 2 26.664 107.031 264.557 1 72.99 ? PA NDP 601 E 1 HETATM 2 O O1A NDP . . . V 2 27.448 106.944 265.849 1 83.52 ? O1A NDP 601 E 1 HETATM 3 O O2A NDP . . . V 2 26.434 105.64 264.047 1 79.99 ? O2A NDP 601 E 1 HETATM 4 O O5B NDP . . . V 2 25.308 107.701 264.808 1 70.07 ? O5B NDP 601 E 1 HETATM 5 C C5B NDP . . . V 2 25.262 109.02 265.28 1 67.6 ? C5B NDP 601 E 1 HETATM 6 C C4B NDP . . . V 2 23.937 109.634 265.443 1 73.6 ? C4B NDP 601 E 1 HETATM 7 O O4B NDP . . . V 2 23.276 109.078 266.559 1 66.61 ? O4B NDP 601 E 1 HETATM 8 C C3B NDP . . . V 2 24.022 111.064 265.74 1 73.41 ? C3B NDP 601 E 1 HETATM 9 O O3B NDP . . . V 2 24.149 111.829 264.593 1 76.5 ? O3B NDP 601 E 1 HETATM 10 C C2B NDP . . . V 2 22.766 111.293 266.408 1 76.43 ? C2B NDP 601 E 1 HETATM 11 O O2B NDP . . . V 2 21.683 111.209 265.525 1 80.17 ? O2B NDP 601 E 1 HETATM 12 C C1B NDP . . . V 2 22.685 110.143 267.284 1 74.79 ? C1B NDP 601 E 1 HETATM 13 N N9A NDP . . . V 2 23.401 110.373 268.489 1 84.67 ? N9A NDP 601 E 1 HETATM 14 C C8A NDP . . . V 2 24.701 110.057 268.708 1 87.25 ? C8A NDP 601 E 1 HETATM 15 N N7A NDP . . . V 2 25.042 110.408 269.963 1 94.02 ? N7A NDP 601 E 1 HETATM 16 C C5A NDP . . . V 2 23.938 110.958 270.571 1 87.1 ? C5A NDP 601 E 1 HETATM 17 C C6A NDP . . . V 2 23.684 111.499 271.856 1 88.42 ? C6A NDP 601 E 1 HETATM 18 N N6A NDP . . . V 2 24.776 111.534 272.862 1 88.52 ? N6A NDP 601 E 1 HETATM 19 N N1A NDP . . . V 2 22.448 111.978 272.163 1 88.81 ? N1A NDP 601 E 1 HETATM 20 C C2A NDP . . . V 2 21.467 111.933 271.222 1 87.19 ? C2A NDP 601 E 1 HETATM 21 N N3A NDP . . . V 2 21.66 111.432 269.998 1 89.41 ? N3A NDP 601 E 1 HETATM 22 C C4A NDP . . . V 2 22.899 110.932 269.638 1 84.5 ? C4A NDP 601 E 1 HETATM 23 O O3 NDP . . . V 2 27.467 107.858 263.459 1 65.12 ? O3 NDP 601 E 1 HETATM 24 P PN NDP . . . V 2 28.977 107.501 263.119 1 74.83 ? PN NDP 601 E 1 HETATM 25 O O1N NDP . . . V 2 29.544 108.494 262.093 1 60.29 ? O1N NDP 601 E 1 HETATM 26 O O2N NDP . . . V 2 29.803 107.573 264.384 1 77.92 ? O2N NDP 601 E 1 HETATM 27 O O5D NDP . . . V 2 29.023 105.998 262.514 1 75.3 ? O5D NDP 601 E 1 HETATM 28 C C5D NDP . . . V 2 28.88 105.807 261.131 1 77.62 ? C5D NDP 601 E 1 HETATM 29 C C4D NDP . . . V 2 29.937 105.084 260.444 1 71.18 ? C4D NDP 601 E 1 HETATM 30 O O4D NDP . . . V 2 30.481 104.098 261.319 1 71.22 ? O4D NDP 601 E 1 HETATM 31 C C3D NDP . . . V 2 29.423 104.365 259.272 1 70.01 ? C3D NDP 601 E 1 HETATM 32 O O3D NDP . . . V 2 30.392 104.363 258.276 1 73.67 ? O3D NDP 601 E 1 HETATM 33 C C2D NDP . . . V 2 29.226 103.036 259.743 1 68.9 ? C2D NDP 601 E 1 HETATM 34 O O2D NDP . . . V 2 29.303 102.118 258.694 1 65.83 ? O2D NDP 601 E 1 HETATM 35 C C1D NDP . . . V 2 30.352 102.874 260.682 1 63.84 ? C1D NDP 601 E 1 HETATM 36 N N1N NDP . . . V 2 30.1 101.818 261.612 1 61.94 ? N1N NDP 601 E 1 HETATM 37 C C2N NDP . . . V 2 31.014 100.84 261.717 1 67.21 ? C2N NDP 601 E 1 HETATM 38 C C3N NDP . . . V 2 30.833 99.777 262.611 1 71.38 ? C3N NDP 601 E 1 HETATM 39 C C7N NDP . . . V 2 31.904 98.706 262.681 1 68 ? C7N NDP 601 E 1 HETATM 40 O O7N NDP . . . V 2 31.838 97.827 263.555 1 69.19 ? O7N NDP 601 E 1 HETATM 41 N N7N NDP . . . V 2 32.991 98.704 261.745 1 70.03 ? N7N NDP 601 E 1 HETATM 42 C C4N NDP . . . V 2 29.678 99.723 263.414 1 70.48 ? C4N NDP 601 E 1 HETATM 43 C C5N NDP . . . V 2 28.746 100.761 263.276 1 73.92 ? C5N NDP 601 E 1 HETATM 44 C C6N NDP . . . V 2 28.964 101.804 262.375 1 68.97 ? C6N NDP 601 E 1 HETATM 45 P P2B NDP . . . V 2 20.687 112.397 265.36 1 78.36 ? P2B NDP 601 E 1 HETATM 46 O O1X NDP . . . V 2 21.221 113.348 264.27 1 75.95 ? O1X NDP 601 E 1 HETATM 47 O O2X NDP . . . V 2 19.357 111.882 265.001 1 75.53 ? O2X NDP 601 E 1 HETATM 48 O O3X NDP . . . V 2 20.557 113.143 266.65 1 87.85 ? O3X NDP 601 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #