data_6PFE # _model_server_result.job_id RDlRpsH8qQsEp6ehhBKEQA _model_server_result.datetime_utc '2024-11-13 12:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":603}' # _entry.id 6PFE # _exptl.entry_id 6PFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.417 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxybenzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95 _cell.angle_gamma 90 _cell.entry_id 6PFE _cell.length_a 212.859 _cell.length_b 115.641 _cell.length_c 219.899 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 C,E,N,O,P,Q,V,W,X,Y,BA,DA 2 1 D,R,S,T,U,CA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -57.496382 0 657.186654 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N # _chem_comp.formula 'C22 H19 N5 O5' _chem_comp.formula_weight 433.417 _chem_comp.id OEA _chem_comp.mon_nstd_flag . _chem_comp.name '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C1 OEA sing 376 n n N2 C1 OEA doub 377 n n N2 C2 OEA sing 378 n n C1 N1 OEA sing 379 n n O2 C14 OEA doub 380 n n N3 C2 OEA sing 381 n y N3 C6 OEA sing 382 n y C2 C3 OEA doub 383 n y C10 C9 OEA doub 384 n y C10 C11 OEA sing 385 n y N1 C4 OEA sing 386 n n C6 C5 OEA doub 387 n y C9 C8 OEA sing 388 n y C14 C11 OEA sing 389 n n C14 N5 OEA sing 390 n n C3 C4 OEA sing 391 n n C3 C5 OEA sing 392 n y C4 O1 OEA doub 393 n n C11 C12 OEA doub 394 n y O4 C21 OEA doub 395 n n C5 C7 OEA sing 396 n n O3 C21 OEA sing 397 n n C21 C20 OEA sing 398 n n N5 C15 OEA sing 399 n n C20 C15 OEA doub 400 n y C20 C19 OEA sing 401 n y C8 C7 OEA sing 402 n n C8 C13 OEA doub 403 n y C15 C16 OEA sing 404 n y C19 C18 OEA doub 405 n y C16 C17 OEA doub 406 n y C18 C17 OEA sing 407 n y C12 C13 OEA sing 408 n y C17 O5 OEA sing 409 n n O5 C22 OEA sing 410 n n C13 H1 OEA sing 411 n n C12 H2 OEA sing 412 n n C10 H3 OEA sing 413 n n C6 H4 OEA sing 414 n n C16 H5 OEA sing 415 n n C18 H6 OEA sing 416 n n C19 H7 OEA sing 417 n n C22 H8 OEA sing 418 n n C22 H9 OEA sing 419 n n C22 H10 OEA sing 420 n n C7 H11 OEA sing 421 n n C7 H12 OEA sing 422 n n C9 H13 OEA sing 423 n n N1 H14 OEA sing 424 n n N3 H15 OEA sing 425 n n N4 H16 OEA sing 426 n n N4 H17 OEA sing 427 n n N5 H18 OEA sing 428 n n O3 H19 OEA sing 429 n n # _atom_sites.entry_id 6PFE _atom_sites.fract_transf_matrix[1][1] 0.004698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000411 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEA A 1 603 603 OEA T12 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEA B 1 603 603 OEA T12 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEA C 1 603 603 OEA T12 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEA D 1 603 603 OEA T12 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEA E 1 603 603 OEA T12 . Y 5 MTX E 1 604 604 MTX MTX . Z 6 HOH A 1 701 29 HOH HOH . Z 6 HOH A 2 702 21 HOH HOH . Z 6 HOH A 3 703 40 HOH HOH . Z 6 HOH A 4 704 17 HOH HOH . Z 6 HOH A 5 705 15 HOH HOH . Z 6 HOH A 6 706 2 HOH HOH . Z 6 HOH A 7 707 20 HOH HOH . Z 6 HOH A 8 708 25 HOH HOH . Z 6 HOH A 9 709 3 HOH HOH . AA 6 HOH B 1 701 18 HOH HOH . AA 6 HOH B 2 702 31 HOH HOH . AA 6 HOH B 3 703 23 HOH HOH . AA 6 HOH B 4 704 16 HOH HOH . AA 6 HOH B 5 705 19 HOH HOH . AA 6 HOH B 6 706 8 HOH HOH . AA 6 HOH B 7 707 27 HOH HOH . AA 6 HOH B 8 708 4 HOH HOH . AA 6 HOH B 9 709 11 HOH HOH . AA 6 HOH B 10 710 30 HOH HOH . AA 6 HOH B 11 711 13 HOH HOH . AA 6 HOH B 12 712 1 HOH HOH . AA 6 HOH B 13 713 14 HOH HOH . AA 6 HOH B 14 714 34 HOH HOH . BA 6 HOH C 1 701 33 HOH HOH . BA 6 HOH C 2 702 43 HOH HOH . BA 6 HOH C 3 703 35 HOH HOH . BA 6 HOH C 4 704 39 HOH HOH . BA 6 HOH C 5 705 9 HOH HOH . CA 6 HOH D 1 701 22 HOH HOH . CA 6 HOH D 2 702 42 HOH HOH . CA 6 HOH D 3 703 5 HOH HOH . DA 6 HOH E 1 701 26 HOH HOH . DA 6 HOH E 2 702 32 HOH HOH . DA 6 HOH E 3 703 28 HOH HOH . DA 6 HOH E 4 704 36 HOH HOH . DA 6 HOH E 5 705 12 HOH HOH . DA 6 HOH E 6 706 10 HOH HOH . DA 6 HOH E 7 707 41 HOH HOH . DA 6 HOH E 8 708 24 HOH HOH . DA 6 HOH E 9 709 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 OEA . . . L 4 4.678 116.06 239.195 1 75.5 ? C13 OEA 603 B 1 HETATM 2 C C12 OEA . . . L 4 3.659 116.143 240.144 1 72.03 ? C12 OEA 603 B 1 HETATM 3 C C11 OEA . . . L 4 3.742 117.05 241.199 1 76.43 ? C11 OEA 603 B 1 HETATM 4 C C10 OEA . . . L 4 4.869 117.863 241.297 1 77.59 ? C10 OEA 603 B 1 HETATM 5 C C14 OEA . . . L 4 2.637 117.126 242.225 1 73.08 ? C14 OEA 603 B 1 HETATM 6 C C15 OEA . . . L 4 0.315 116.236 242.626 1 68.61 ? C15 OEA 603 B 1 HETATM 7 C C21 OEA . . . L 4 -0.864 118.3 241.688 1 103.04 ? C21 OEA 603 B 1 HETATM 8 C C3 OEA . . . L 4 8.798 116.344 239.968 1 83.73 ? C3 OEA 603 B 1 HETATM 9 C C4 OEA . . . L 4 8.414 115.145 240.708 1 79.88 ? C4 OEA 603 B 1 HETATM 10 C C5 OEA . . . L 4 8.213 117.079 238.921 1 77.78 ? C5 OEA 603 B 1 HETATM 11 C C6 OEA . . . L 4 9.066 118.141 238.634 1 75.73 ? C6 OEA 603 B 1 HETATM 12 C C2 OEA . . . L 4 9.993 116.969 240.296 1 77.04 ? C2 OEA 603 B 1 HETATM 13 C C1 OEA . . . L 4 10.526 115.504 241.929 1 69.15 ? C1 OEA 603 B 1 HETATM 14 C C16 OEA . . . L 4 0.271 115.123 243.453 1 61.28 ? C16 OEA 603 B 1 HETATM 15 C C17 OEA . . . L 4 -0.852 114.842 244.217 1 83.55 ? C17 OEA 603 B 1 HETATM 16 C C18 OEA . . . L 4 -1.961 115.673 244.154 1 97.17 ? C18 OEA 603 B 1 HETATM 17 C C19 OEA . . . L 4 -1.932 116.786 243.326 1 100.27 ? C19 OEA 603 B 1 HETATM 18 C C20 OEA . . . L 4 -0.806 117.076 242.558 1 97.66 ? C20 OEA 603 B 1 HETATM 19 C C22 OEA . . . L 4 -0.62 112.55 244.36 1 76.64 ? C22 OEA 603 B 1 HETATM 20 C C7 OEA . . . L 4 6.901 116.775 238.26 1 75.7 ? C7 OEA 603 B 1 HETATM 21 C C8 OEA . . . L 4 5.801 116.874 239.289 1 75.08 ? C8 OEA 603 B 1 HETATM 22 C C9 OEA . . . L 4 5.887 117.778 240.346 1 77.1 ? C9 OEA 603 B 1 HETATM 23 N N1 OEA . . . L 4 9.354 114.834 241.651 1 65.83 ? N1 OEA 603 B 1 HETATM 24 N N2 OEA . . . L 4 10.862 116.566 241.267 1 78.03 ? N2 OEA 603 B 1 HETATM 25 N N3 OEA . . . L 4 10.149 118.057 239.483 1 76.68 ? N3 OEA 603 B 1 HETATM 26 N N4 OEA . . . L 4 11.364 114.961 242.992 1 73.74 ? N4 OEA 603 B 1 HETATM 27 N N5 OEA . . . L 4 1.556 116.425 241.867 1 85.98 ? N5 OEA 603 B 1 HETATM 28 O O1 OEA . . . L 4 7.409 114.451 240.571 1 82.74 ? O1 OEA 603 B 1 HETATM 29 O O2 OEA . . . L 4 2.697 117.741 243.286 1 65.43 ? O2 OEA 603 B 1 HETATM 30 O O3 OEA . . . L 4 -2.074 118.904 241.842 1 83.79 -1 O3 OEA 603 B 1 HETATM 31 O O4 OEA . . . L 4 -0.003 118.731 240.937 1 105.28 ? O4 OEA 603 B 1 HETATM 32 O O5 OEA . . . L 4 -0.862 113.73 245.031 1 85.8 ? O5 OEA 603 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 32 #