data_6PFE
#
_model_server_result.job_id            Nq8CkH5lw_5D4JQ2oWMjMQ 
_model_server_result.datetime_utc      '2024-11-29 07:16:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":603}' 
#
_entry.id    6PFE 
#
_exptl.entry_id    6PFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.417 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxybenzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95 
_cell.angle_gamma         90 
_cell.entry_id            6PFE 
_cell.length_a            212.859 
_cell.length_b            115.641 
_cell.length_c            219.899 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 
C,E,N,O,P,Q,V,W,X,Y,BA,DA 2 1 
D,R,S,T,U,CA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -57.496382 0 657.186654 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C22 H19 N5 O5' 
_chem_comp.formula_weight    433.417 
_chem_comp.id                OEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxybenzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C1 OEA sing 376 n n 
N2 C1 OEA doub 377 n n 
N2 C2 OEA sing 378 n n 
C1 N1 OEA sing 379 n n 
O2 C14 OEA doub 380 n n 
N3 C2 OEA sing 381 n y 
N3 C6 OEA sing 382 n y 
C2 C3 OEA doub 383 n y 
C10 C9 OEA doub 384 n y 
C10 C11 OEA sing 385 n y 
N1 C4 OEA sing 386 n n 
C6 C5 OEA doub 387 n y 
C9 C8 OEA sing 388 n y 
C14 C11 OEA sing 389 n n 
C14 N5 OEA sing 390 n n 
C3 C4 OEA sing 391 n n 
C3 C5 OEA sing 392 n y 
C4 O1 OEA doub 393 n n 
C11 C12 OEA doub 394 n y 
O4 C21 OEA doub 395 n n 
C5 C7 OEA sing 396 n n 
O3 C21 OEA sing 397 n n 
C21 C20 OEA sing 398 n n 
N5 C15 OEA sing 399 n n 
C20 C15 OEA doub 400 n y 
C20 C19 OEA sing 401 n y 
C8 C7 OEA sing 402 n n 
C8 C13 OEA doub 403 n y 
C15 C16 OEA sing 404 n y 
C19 C18 OEA doub 405 n y 
C16 C17 OEA doub 406 n y 
C18 C17 OEA sing 407 n y 
C12 C13 OEA sing 408 n y 
C17 O5 OEA sing 409 n n 
O5 C22 OEA sing 410 n n 
C13 H1 OEA sing 411 n n 
C12 H2 OEA sing 412 n n 
C10 H3 OEA sing 413 n n 
C6 H4 OEA sing 414 n n 
C16 H5 OEA sing 415 n n 
C18 H6 OEA sing 416 n n 
C19 H7 OEA sing 417 n n 
C22 H8 OEA sing 418 n n 
C22 H9 OEA sing 419 n n 
C22 H10 OEA sing 420 n n 
C7 H11 OEA sing 421 n n 
C7 H12 OEA sing 422 n n 
C9 H13 OEA sing 423 n n 
N1 H14 OEA sing 424 n n 
N3 H15 OEA sing 425 n n 
N4 H16 OEA sing 426 n n 
N4 H17 OEA sing 427 n n 
N5 H18 OEA sing 428 n n 
O3 H19 OEA sing 429 n n 
#
_atom_sites.entry_id                     6PFE 
_atom_sites.fract_transf_matrix[1][1]    0.004698 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000411 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008647 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OEA A 1 603 603 OEA T12 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OEA B 1 603 603 OEA T12 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OEA C 1 603 603 OEA T12 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OEA D 1 603 603 OEA T12 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OEA E 1 603 603 OEA T12 . 
Y 5 MTX E 1 604 604 MTX MTX . 
Z 6 HOH A 1 701 29 HOH HOH . 
Z 6 HOH A 2 702 21 HOH HOH . 
Z 6 HOH A 3 703 40 HOH HOH . 
Z 6 HOH A 4 704 17 HOH HOH . 
Z 6 HOH A 5 705 15 HOH HOH . 
Z 6 HOH A 6 706 2 HOH HOH . 
Z 6 HOH A 7 707 20 HOH HOH . 
Z 6 HOH A 8 708 25 HOH HOH . 
Z 6 HOH A 9 709 3 HOH HOH . 
AA 6 HOH B 1 701 18 HOH HOH . 
AA 6 HOH B 2 702 31 HOH HOH . 
AA 6 HOH B 3 703 23 HOH HOH . 
AA 6 HOH B 4 704 16 HOH HOH . 
AA 6 HOH B 5 705 19 HOH HOH . 
AA 6 HOH B 6 706 8 HOH HOH . 
AA 6 HOH B 7 707 27 HOH HOH . 
AA 6 HOH B 8 708 4 HOH HOH . 
AA 6 HOH B 9 709 11 HOH HOH . 
AA 6 HOH B 10 710 30 HOH HOH . 
AA 6 HOH B 11 711 13 HOH HOH . 
AA 6 HOH B 12 712 1 HOH HOH . 
AA 6 HOH B 13 713 14 HOH HOH . 
AA 6 HOH B 14 714 34 HOH HOH . 
BA 6 HOH C 1 701 33 HOH HOH . 
BA 6 HOH C 2 702 43 HOH HOH . 
BA 6 HOH C 3 703 35 HOH HOH . 
BA 6 HOH C 4 704 39 HOH HOH . 
BA 6 HOH C 5 705 9 HOH HOH . 
CA 6 HOH D 1 701 22 HOH HOH . 
CA 6 HOH D 2 702 42 HOH HOH . 
CA 6 HOH D 3 703 5 HOH HOH . 
DA 6 HOH E 1 701 26 HOH HOH . 
DA 6 HOH E 2 702 32 HOH HOH . 
DA 6 HOH E 3 703 28 HOH HOH . 
DA 6 HOH E 4 704 36 HOH HOH . 
DA 6 HOH E 5 705 12 HOH HOH . 
DA 6 HOH E 6 706 10 HOH HOH . 
DA 6 HOH E 7 707 41 HOH HOH . 
DA 6 HOH E 8 708 24 HOH HOH . 
DA 6 HOH E 9 709 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 OEA . . . X 4 69.377 84.554 260.309 1 74.47 ? C13 OEA 603 E 1 
HETATM 2 C C12 OEA . . . X 4 69.173 85.893 260.626 1 72.84 ? C12 OEA 603 E 1 
HETATM 3 C C11 OEA . . . X 4 70.254 86.745 260.816 1 69.85 ? C11 OEA 603 E 1 
HETATM 4 C C10 OEA . . . X 4 71.548 86.244 260.695 1 64.68 ? C10 OEA 603 E 1 
HETATM 5 C C14 OEA . . . X 4 69.997 88.19 261.154 1 77.43 ? C14 OEA 603 E 1 
HETATM 6 C C15 OEA . . . X 4 68.023 89.782 261.131 1 85.65 ? C15 OEA 603 E 1 
HETATM 7 C C21 OEA . . . X 4 68.529 90.598 258.767 1 101.8 ? C21 OEA 603 E 1 
HETATM 8 C C3 OEA . . . X 4 72.396 82.03 261.838 1 85.74 ? C3 OEA 603 E 1 
HETATM 9 C C4 OEA . . . X 4 71.662 82.398 263.051 1 83.44 ? C4 OEA 603 E 1 
HETATM 10 C C5 OEA . . . X 4 72.118 82.086 260.461 1 75.9 ? C5 OEA 603 E 1 
HETATM 11 C C6 OEA . . . X 4 73.227 81.58 259.787 1 73.96 ? C6 OEA 603 E 1 
HETATM 12 C C2 OEA . . . X 4 73.67 81.492 261.974 1 79.6 ? C2 OEA 603 E 1 
HETATM 13 C C1 OEA . . . X 4 73.675 81.598 264.228 1 83.46 ? C1 OEA 603 E 1 
HETATM 14 C C16 OEA . . . X 4 67.424 90.006 262.363 1 75.72 ? C16 OEA 603 E 1 
HETATM 15 C C17 OEA . . . X 4 66.743 91.189 262.62 1 93.72 ? C17 OEA 603 E 1 
HETATM 16 C C18 OEA . . . X 4 66.646 92.163 261.636 1 99.94 ? C18 OEA 603 E 1 
HETATM 17 C C19 OEA . . . X 4 67.235 91.946 260.398 1 106.65 ? C19 OEA 603 E 1 
HETATM 18 C C20 OEA . . . X 4 67.921 90.763 260.133 1 103.57 ? C20 OEA 603 E 1 
HETATM 19 C C22 OEA . . . X 4 65.749 90.234 264.484 1 90.51 ? C22 OEA 603 E 1 
HETATM 20 C C7 OEA . . . X 4 70.856 82.6 259.837 1 74.42 ? C7 OEA 603 E 1 
HETATM 21 C C8 OEA . . . X 4 70.665 84.053 260.18 1 72 ? C8 OEA 603 E 1 
HETATM 22 C C9 OEA . . . X 4 71.752 84.903 260.374 1 69.69 ? C9 OEA 603 E 1 
HETATM 23 N N1 OEA . . . X 4 72.406 82.134 264.165 1 76.96 ? N1 OEA 603 E 1 
HETATM 24 N N2 OEA . . . X 4 74.32 81.27 263.152 1 85.76 ? N2 OEA 603 E 1 
HETATM 25 N N3 OEA . . . X 4 74.166 81.221 260.728 1 84.49 ? N3 OEA 603 E 1 
HETATM 26 N N4 OEA . . . X 4 74.244 81.417 265.56 1 72.73 ? N4 OEA 603 E 1 
HETATM 27 N N5 OEA . . . X 4 68.714 88.505 260.938 1 81.26 ? N5 OEA 603 E 1 
HETATM 28 O O1 OEA . . . X 4 70.536 82.881 263.161 1 84.73 ? O1 OEA 603 E 1 
HETATM 29 O O2 OEA . . . X 4 70.837 88.997 261.544 1 77.67 ? O2 OEA 603 E 1 
HETATM 30 O O3 OEA . . . X 4 68.271 91.705 258.016 1 78.96 -1 O3 OEA 603 E 1 
HETATM 31 O O4 OEA . . . X 4 69.161 89.642 258.335 1 102.33 ? O4 OEA 603 E 1 
HETATM 32 O O5 OEA . . . X 4 66.16 91.39 263.853 1 103.16 ? O5 OEA 603 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    197 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#