data_6PFF # _model_server_result.job_id mKm6XqdaE90SdPnom96Prg _model_server_result.datetime_utc '2024-11-25 08:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6PFF # _exptl.entry_id 6PFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.69 _cell.angle_gamma 90 _cell.entry_id 6PFF _cell.length_a 213.424 _cell.length_b 116.794 _cell.length_c 221.76 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,N,O,EA,FA 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y,GA,HA 2 1 E,Z,AA,BA,CA,DA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.424 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 R N N ? 4 W N N ? 4 BA N N # _chem_comp.formula 'C22 H16 N6 O4' _chem_comp.formula_weight 428.4 _chem_comp.id OG1 _chem_comp.mon_nstd_flag . _chem_comp.name '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C22 OG1 trip 376 n n C22 C17 OG1 sing 377 n n C18 C17 OG1 doub 378 n y C18 C19 OG1 sing 379 n y C17 C16 OG1 sing 380 n y C19 C20 OG1 doub 381 n y C16 C15 OG1 doub 382 n y O2 C14 OG1 doub 383 n n N4 C4 OG1 sing 384 n n C20 C15 OG1 sing 385 n y C20 C21 OG1 sing 386 n n C15 N5 OG1 sing 387 n n C14 N5 OG1 sing 388 n n C14 C11 OG1 sing 389 n n C21 O4 OG1 doub 390 n n C21 O3 OG1 sing 391 n n C4 N2 OG1 sing 392 n n C4 N1 OG1 doub 393 n n N2 C3 OG1 sing 394 n n C12 C11 OG1 doub 395 n y C12 C13 OG1 sing 396 n y C11 C10 OG1 sing 397 n y N1 C1 OG1 sing 398 n n C3 O1 OG1 doub 399 n n C3 C2 OG1 sing 400 n n C13 C8 OG1 doub 401 n y C10 C9 OG1 doub 402 n y C1 C2 OG1 doub 403 n y C1 N3 OG1 sing 404 n y C2 C5 OG1 sing 405 n y C9 C8 OG1 sing 406 n y C8 C7 OG1 sing 407 n n N3 C6 OG1 sing 408 n y C5 C6 OG1 doub 409 n y C5 C7 OG1 sing 410 n n C10 H1 OG1 sing 411 n n C12 H2 OG1 sing 412 n n C13 H3 OG1 sing 413 n n C16 H4 OG1 sing 414 n n C18 H5 OG1 sing 415 n n C19 H6 OG1 sing 416 n n C6 H7 OG1 sing 417 n n C7 H8 OG1 sing 418 n n C7 H9 OG1 sing 419 n n C9 H10 OG1 sing 420 n n N2 H11 OG1 sing 421 n n N3 H12 OG1 sing 422 n n N4 H13 OG1 sing 423 n n N4 H14 OG1 sing 424 n n N5 H15 OG1 sing 425 n n O3 H16 OG1 sing 426 n n # _atom_sites.entry_id 6PFF _atom_sites.fract_transf_matrix[1][1] 0.004686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000467 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OG1 A 1 603 603 OG1 T13 . I 5 MTX A 1 604 604 MTX MTX . J 6 SO4 A 1 605 2 SO4 SO4 . K 2 NDP B 1 601 601 NDP NDP . L 3 UFP B 1 602 602 UFP UFP . M 4 OG1 B 1 603 603 OG1 T13 . N 5 MTX B 1 604 604 MTX MTX . O 6 SO4 B 1 605 1 SO4 SO4 . P 2 NDP C 1 601 601 NDP NDP . Q 3 UFP C 1 602 602 UFP UFP . R 4 OG1 C 1 603 603 OG1 T13 . S 5 MTX C 1 604 604 MTX MTX . T 6 SO4 C 1 605 4 SO4 SO4 . U 2 NDP D 1 601 601 NDP NDP . V 3 UFP D 1 602 602 UFP UFP . W 4 OG1 D 1 603 603 OG1 T13 . X 5 MTX D 1 604 604 MTX MTX . Y 6 SO4 D 1 605 3 SO4 SO4 . Z 2 NDP E 1 601 601 NDP NDP . AA 3 UFP E 1 602 602 UFP UFP . BA 4 OG1 E 1 603 603 OG1 T13 . CA 5 MTX E 1 604 604 MTX MTX . DA 6 SO4 E 1 605 5 SO4 SO4 . EA 7 HOH A 1 701 6 HOH HOH . EA 7 HOH A 2 702 1 HOH HOH . EA 7 HOH A 3 703 8 HOH HOH . FA 7 HOH B 1 701 11 HOH HOH . FA 7 HOH B 2 702 13 HOH HOH . FA 7 HOH B 3 703 10 HOH HOH . FA 7 HOH B 4 704 5 HOH HOH . FA 7 HOH B 5 705 7 HOH HOH . FA 7 HOH B 6 706 4 HOH HOH . GA 7 HOH C 1 701 3 HOH HOH . HA 7 HOH D 1 701 12 HOH HOH . HA 7 HOH D 2 702 14 HOH HOH . HA 7 HOH D 3 703 2 HOH HOH . HA 7 HOH D 4 704 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OG1 . . . H 4 -40.283 -17.329 88.929 1 89.88 ? C1 OG1 603 A 1 HETATM 2 C C10 OG1 . . . H 4 -33.937 -18.558 88.772 1 65.78 ? C10 OG1 603 A 1 HETATM 3 C C11 OG1 . . . H 4 -34 -17.563 87.769 1 75.69 ? C11 OG1 603 A 1 HETATM 4 C C12 OG1 . . . H 4 -35.093 -16.668 87.765 1 74.14 ? C12 OG1 603 A 1 HETATM 5 C C13 OG1 . . . H 4 -36.091 -16.764 88.756 1 69.16 ? C13 OG1 603 A 1 HETATM 6 C C14 OG1 . . . H 4 -32.929 -17.483 86.714 1 79.86 ? C14 OG1 603 A 1 HETATM 7 C C15 OG1 . . . H 4 -30.584 -18.338 86.321 1 96.02 ? C15 OG1 603 A 1 HETATM 8 C C16 OG1 . . . H 4 -30.427 -19.566 85.641 1 87.79 ? C16 OG1 603 A 1 HETATM 9 C C17 OG1 . . . H 4 -29.267 -19.863 84.913 1 99.75 ? C17 OG1 603 A 1 HETATM 10 C C18 OG1 . . . H 4 -28.22 -18.926 84.859 1 115.68 ? C18 OG1 603 A 1 HETATM 11 C C19 OG1 . . . H 4 -28.352 -17.699 85.536 1 119.54 ? C19 OG1 603 A 1 HETATM 12 C C2 OG1 . . . H 4 -39.113 -18.019 89.113 1 89.67 ? C2 OG1 603 A 1 HETATM 13 C C20 OG1 . . . H 4 -29.519 -17.381 86.279 1 117.91 ? C20 OG1 603 A 1 HETATM 14 C C21 OG1 . . . H 4 -29.567 -16.036 86.97 1 114.71 ? C21 OG1 603 A 1 HETATM 15 C C22 OG1 . . . H 4 -29.18 -21.14 84.233 1 84.83 ? C22 OG1 603 A 1 HETATM 16 C C3 OG1 . . . H 4 -38.83 -19.123 88.167 1 81.86 ? C3 OG1 603 A 1 HETATM 17 C C4 OG1 . . . H 4 -40.937 -18.552 87.133 1 78.7 ? C4 OG1 603 A 1 HETATM 18 C C5 OG1 . . . H 4 -38.437 -17.441 90.241 1 85.97 ? C5 OG1 603 A 1 HETATM 19 C C6 OG1 . . . H 4 -39.236 -16.419 90.697 1 82.69 ? C6 OG1 603 A 1 HETATM 20 C C7 OG1 . . . H 4 -37.107 -17.855 90.821 1 76.08 ? C7 OG1 603 A 1 HETATM 21 C C8 OG1 . . . H 4 -36.019 -17.754 89.762 1 72.01 ? C8 OG1 603 A 1 HETATM 22 C C9 OG1 . . . H 4 -34.936 -18.653 89.762 1 67.24 ? C9 OG1 603 A 1 HETATM 23 N N1 OG1 . . . H 4 -41.23 -17.57 87.942 1 90.96 ? N1 OG1 603 A 1 HETATM 24 N N2 OG1 . . . H 4 -39.768 -19.327 87.221 1 77.32 ? N2 OG1 603 A 1 HETATM 25 N N3 OG1 . . . H 4 -40.359 -16.357 89.894 1 95.85 ? N3 OG1 603 A 1 HETATM 26 N N4 OG1 . . . H 4 -41.737 -18.958 86.087 1 62.82 ? N4 OG1 603 A 1 HETATM 27 N N5 OG1 . . . H 4 -31.8 -18.138 87.04 1 88.44 ? N5 OG1 603 A 1 HETATM 28 N N6 OG1 . . . H 4 -29.132 -22.163 83.7 1 67.84 ? N6 OG1 603 A 1 HETATM 29 O O1 OG1 . . . H 4 -37.812 -19.808 88.235 1 76.7 ? O1 OG1 603 A 1 HETATM 30 O O2 OG1 . . . H 4 -33.113 -16.865 85.666 1 80.89 ? O2 OG1 603 A 1 HETATM 31 O O3 OG1 . . . H 4 -28.366 -15.632 87.484 1 93.83 -1 O3 OG1 603 A 1 HETATM 32 O O4 OG1 . . . H 4 -30.592 -15.36 87.056 1 117.14 ? O4 OG1 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #