data_6PFF
#
_model_server_result.job_id            F6UKCSL6IhSHHGFUFGsIUA 
_model_server_result.datetime_utc      '2024-11-25 08:46:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pff 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":603}' 
#
_entry.id    6PFF 
#
_exptl.entry_id    6PFF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              428.4 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.69 
_cell.angle_gamma         90 
_cell.entry_id            6PFF 
_cell.length_a            213.424 
_cell.length_b            116.794 
_cell.length_c            221.76 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,N,O,EA,FA 1 1 
C,D,P,Q,R,S,T,U,V,W,X,Y,GA,HA 2 1 
E,Z,AA,BA,CA,DA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.424 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 R N N 
? 4 W N N 
? 4 BA N N 
#
_chem_comp.formula           'C22 H16 N6 O4' 
_chem_comp.formula_weight    428.4 
_chem_comp.id                OG1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C22 OG1 trip 376 n n 
C22 C17 OG1 sing 377 n n 
C18 C17 OG1 doub 378 n y 
C18 C19 OG1 sing 379 n y 
C17 C16 OG1 sing 380 n y 
C19 C20 OG1 doub 381 n y 
C16 C15 OG1 doub 382 n y 
O2 C14 OG1 doub 383 n n 
N4 C4 OG1 sing 384 n n 
C20 C15 OG1 sing 385 n y 
C20 C21 OG1 sing 386 n n 
C15 N5 OG1 sing 387 n n 
C14 N5 OG1 sing 388 n n 
C14 C11 OG1 sing 389 n n 
C21 O4 OG1 doub 390 n n 
C21 O3 OG1 sing 391 n n 
C4 N2 OG1 sing 392 n n 
C4 N1 OG1 doub 393 n n 
N2 C3 OG1 sing 394 n n 
C12 C11 OG1 doub 395 n y 
C12 C13 OG1 sing 396 n y 
C11 C10 OG1 sing 397 n y 
N1 C1 OG1 sing 398 n n 
C3 O1 OG1 doub 399 n n 
C3 C2 OG1 sing 400 n n 
C13 C8 OG1 doub 401 n y 
C10 C9 OG1 doub 402 n y 
C1 C2 OG1 doub 403 n y 
C1 N3 OG1 sing 404 n y 
C2 C5 OG1 sing 405 n y 
C9 C8 OG1 sing 406 n y 
C8 C7 OG1 sing 407 n n 
N3 C6 OG1 sing 408 n y 
C5 C6 OG1 doub 409 n y 
C5 C7 OG1 sing 410 n n 
C10 H1 OG1 sing 411 n n 
C12 H2 OG1 sing 412 n n 
C13 H3 OG1 sing 413 n n 
C16 H4 OG1 sing 414 n n 
C18 H5 OG1 sing 415 n n 
C19 H6 OG1 sing 416 n n 
C6 H7 OG1 sing 417 n n 
C7 H8 OG1 sing 418 n n 
C7 H9 OG1 sing 419 n n 
C9 H10 OG1 sing 420 n n 
N2 H11 OG1 sing 421 n n 
N3 H12 OG1 sing 422 n n 
N4 H13 OG1 sing 423 n n 
N4 H14 OG1 sing 424 n n 
N5 H15 OG1 sing 425 n n 
O3 H16 OG1 sing 426 n n 
#
_atom_sites.entry_id                     6PFF 
_atom_sites.fract_transf_matrix[1][1]    0.004686 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OG1 A 1 603 603 OG1 T13 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 6 SO4 A 1 605 2 SO4 SO4 . 
K 2 NDP B 1 601 601 NDP NDP . 
L 3 UFP B 1 602 602 UFP UFP . 
M 4 OG1 B 1 603 603 OG1 T13 . 
N 5 MTX B 1 604 604 MTX MTX . 
O 6 SO4 B 1 605 1 SO4 SO4 . 
P 2 NDP C 1 601 601 NDP NDP . 
Q 3 UFP C 1 602 602 UFP UFP . 
R 4 OG1 C 1 603 603 OG1 T13 . 
S 5 MTX C 1 604 604 MTX MTX . 
T 6 SO4 C 1 605 4 SO4 SO4 . 
U 2 NDP D 1 601 601 NDP NDP . 
V 3 UFP D 1 602 602 UFP UFP . 
W 4 OG1 D 1 603 603 OG1 T13 . 
X 5 MTX D 1 604 604 MTX MTX . 
Y 6 SO4 D 1 605 3 SO4 SO4 . 
Z 2 NDP E 1 601 601 NDP NDP . 
AA 3 UFP E 1 602 602 UFP UFP . 
BA 4 OG1 E 1 603 603 OG1 T13 . 
CA 5 MTX E 1 604 604 MTX MTX . 
DA 6 SO4 E 1 605 5 SO4 SO4 . 
EA 7 HOH A 1 701 6 HOH HOH . 
EA 7 HOH A 2 702 1 HOH HOH . 
EA 7 HOH A 3 703 8 HOH HOH . 
FA 7 HOH B 1 701 11 HOH HOH . 
FA 7 HOH B 2 702 13 HOH HOH . 
FA 7 HOH B 3 703 10 HOH HOH . 
FA 7 HOH B 4 704 5 HOH HOH . 
FA 7 HOH B 5 705 7 HOH HOH . 
FA 7 HOH B 6 706 4 HOH HOH . 
GA 7 HOH C 1 701 3 HOH HOH . 
HA 7 HOH D 1 701 12 HOH HOH . 
HA 7 HOH D 2 702 14 HOH HOH . 
HA 7 HOH D 3 703 2 HOH HOH . 
HA 7 HOH D 4 704 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OG1 . . . R 4 -104.104 -53.335 66.577 1 107.4 ? C1 OG1 603 C 1 
HETATM 2 C C10 OG1 . . . R 4 -99.488 -49.13 68.126 1 75.99 ? C10 OG1 603 C 1 
HETATM 3 C C11 OG1 . . . R 4 -100.567 -48.235 67.93 1 85.34 ? C11 OG1 603 C 1 
HETATM 4 C C12 OG1 . . . R 4 -101.889 -48.72 68.039 1 83.26 ? C12 OG1 603 C 1 
HETATM 5 C C13 OG1 . . . R 4 -102.122 -50.074 68.349 1 87.75 ? C13 OG1 603 C 1 
HETATM 6 C C14 OG1 . . . R 4 -100.311 -46.794 67.591 1 93.65 ? C14 OG1 603 C 1 
HETATM 7 C C15 OG1 . . . R 4 -98.425 -45.121 67.652 1 94.53 ? C15 OG1 603 C 1 
HETATM 8 C C16 OG1 . . . R 4 -97.665 -44.954 66.474 1 84.09 ? C16 OG1 603 C 1 
HETATM 9 C C17 OG1 . . . R 4 -97.008 -43.748 66.192 1 109.42 ? C17 OG1 603 C 1 
HETATM 10 C C18 OG1 . . . R 4 -97.099 -42.675 67.095 1 115.42 ? C18 OG1 603 C 1 
HETATM 11 C C19 OG1 . . . R 4 -97.85 -42.822 68.275 1 112.95 ? C19 OG1 603 C 1 
HETATM 12 C C2 OG1 . . . R 4 -102.838 -52.849 66.772 1 107.98 ? C2 OG1 603 C 1 
HETATM 13 C C20 OG1 . . . R 4 -98.524 -44.033 68.58 1 113.18 ? C20 OG1 603 C 1 
HETATM 14 C C21 OG1 . . . R 4 -99.304 -44.089 69.875 1 115.27 ? C21 OG1 603 C 1 
HETATM 15 C C22 OG1 . . . R 4 -96.243 -43.637 64.964 1 98.71 ? C22 OG1 603 C 1 
HETATM 16 C C3 OG1 . . . R 4 -102.079 -52.443 65.568 1 102.42 ? C3 OG1 603 C 1 
HETATM 17 C C4 OG1 . . . R 4 -104.038 -53.109 64.322 1 101.89 ? C4 OG1 603 C 1 
HETATM 18 C C5 OG1 . . . R 4 -102.575 -52.871 68.184 1 101.44 ? C5 OG1 603 C 1 
HETATM 19 C C6 OG1 . . . R 4 -103.705 -53.371 68.787 1 97.16 ? C6 OG1 603 C 1 
HETATM 20 C C7 OG1 . . . R 4 -101.314 -52.422 68.877 1 90.94 ? C7 OG1 603 C 1 
HETATM 21 C C8 OG1 . . . R 4 -101.043 -50.962 68.555 1 89.32 ? C8 OG1 603 C 1 
HETATM 22 C C9 OG1 . . . R 4 -99.723 -50.484 68.436 1 78.92 ? C9 OG1 603 C 1 
HETATM 23 N N1 OG1 . . . R 4 -104.744 -53.482 65.354 1 108.02 ? N1 OG1 603 C 1 
HETATM 24 N N2 OG1 . . . R 4 -102.731 -52.597 64.398 1 95.24 ? N2 OG1 603 C 1 
HETATM 25 N N3 OG1 . . . R 4 -104.632 -53.654 67.803 1 110.61 ? N3 OG1 603 C 1 
HETATM 26 N N4 OG1 . . . R 4 -104.483 -53.173 63.018 1 93.21 ? N4 OG1 603 C 1 
HETATM 27 N N5 OG1 . . . R 4 -99.055 -46.386 67.855 1 97 ? N5 OG1 603 C 1 
HETATM 28 N N6 OG1 . . . R 4 -95.64 -43.567 63.983 1 76 ? N6 OG1 603 C 1 
HETATM 29 O O1 OG1 . . . R 4 -100.936 -51.994 65.623 1 99.15 ? O1 OG1 603 C 1 
HETATM 30 O O2 OG1 . . . R 4 -101.2 -46.093 67.106 1 88.66 ? O2 OG1 603 C 1 
HETATM 31 O O3 OG1 . . . R 4 -98.721 -43.402 70.904 1 99.47 -1 O3 OG1 603 C 1 
HETATM 32 O O4 OG1 . . . R 4 -100.371 -44.69 69.997 1 114.59 ? O4 OG1 603 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#