data_6PFF
#
_model_server_result.job_id            ENBd7asC00G4EWaXZhE6Bw 
_model_server_result.datetime_utc      '2024-11-25 08:41:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pff 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":603}' 
#
_entry.id    6PFF 
#
_exptl.entry_id    6PFF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              428.4 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.69 
_cell.angle_gamma         90 
_cell.entry_id            6PFF 
_cell.length_a            213.424 
_cell.length_b            116.794 
_cell.length_c            221.76 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,N,O,EA,FA 1 1 
C,D,P,Q,R,S,T,U,V,W,X,Y,GA,HA 2 1 
E,Z,AA,BA,CA,DA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.424 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 R N N 
? 4 W N N 
? 4 BA N N 
#
_chem_comp.formula           'C22 H16 N6 O4' 
_chem_comp.formula_weight    428.4 
_chem_comp.id                OG1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C22 OG1 trip 376 n n 
C22 C17 OG1 sing 377 n n 
C18 C17 OG1 doub 378 n y 
C18 C19 OG1 sing 379 n y 
C17 C16 OG1 sing 380 n y 
C19 C20 OG1 doub 381 n y 
C16 C15 OG1 doub 382 n y 
O2 C14 OG1 doub 383 n n 
N4 C4 OG1 sing 384 n n 
C20 C15 OG1 sing 385 n y 
C20 C21 OG1 sing 386 n n 
C15 N5 OG1 sing 387 n n 
C14 N5 OG1 sing 388 n n 
C14 C11 OG1 sing 389 n n 
C21 O4 OG1 doub 390 n n 
C21 O3 OG1 sing 391 n n 
C4 N2 OG1 sing 392 n n 
C4 N1 OG1 doub 393 n n 
N2 C3 OG1 sing 394 n n 
C12 C11 OG1 doub 395 n y 
C12 C13 OG1 sing 396 n y 
C11 C10 OG1 sing 397 n y 
N1 C1 OG1 sing 398 n n 
C3 O1 OG1 doub 399 n n 
C3 C2 OG1 sing 400 n n 
C13 C8 OG1 doub 401 n y 
C10 C9 OG1 doub 402 n y 
C1 C2 OG1 doub 403 n y 
C1 N3 OG1 sing 404 n y 
C2 C5 OG1 sing 405 n y 
C9 C8 OG1 sing 406 n y 
C8 C7 OG1 sing 407 n n 
N3 C6 OG1 sing 408 n y 
C5 C6 OG1 doub 409 n y 
C5 C7 OG1 sing 410 n n 
C10 H1 OG1 sing 411 n n 
C12 H2 OG1 sing 412 n n 
C13 H3 OG1 sing 413 n n 
C16 H4 OG1 sing 414 n n 
C18 H5 OG1 sing 415 n n 
C19 H6 OG1 sing 416 n n 
C6 H7 OG1 sing 417 n n 
C7 H8 OG1 sing 418 n n 
C7 H9 OG1 sing 419 n n 
C9 H10 OG1 sing 420 n n 
N2 H11 OG1 sing 421 n n 
N3 H12 OG1 sing 422 n n 
N4 H13 OG1 sing 423 n n 
N4 H14 OG1 sing 424 n n 
N5 H15 OG1 sing 425 n n 
O3 H16 OG1 sing 426 n n 
#
_atom_sites.entry_id                     6PFF 
_atom_sites.fract_transf_matrix[1][1]    0.004686 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OG1 A 1 603 603 OG1 T13 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 6 SO4 A 1 605 2 SO4 SO4 . 
K 2 NDP B 1 601 601 NDP NDP . 
L 3 UFP B 1 602 602 UFP UFP . 
M 4 OG1 B 1 603 603 OG1 T13 . 
N 5 MTX B 1 604 604 MTX MTX . 
O 6 SO4 B 1 605 1 SO4 SO4 . 
P 2 NDP C 1 601 601 NDP NDP . 
Q 3 UFP C 1 602 602 UFP UFP . 
R 4 OG1 C 1 603 603 OG1 T13 . 
S 5 MTX C 1 604 604 MTX MTX . 
T 6 SO4 C 1 605 4 SO4 SO4 . 
U 2 NDP D 1 601 601 NDP NDP . 
V 3 UFP D 1 602 602 UFP UFP . 
W 4 OG1 D 1 603 603 OG1 T13 . 
X 5 MTX D 1 604 604 MTX MTX . 
Y 6 SO4 D 1 605 3 SO4 SO4 . 
Z 2 NDP E 1 601 601 NDP NDP . 
AA 3 UFP E 1 602 602 UFP UFP . 
BA 4 OG1 E 1 603 603 OG1 T13 . 
CA 5 MTX E 1 604 604 MTX MTX . 
DA 6 SO4 E 1 605 5 SO4 SO4 . 
EA 7 HOH A 1 701 6 HOH HOH . 
EA 7 HOH A 2 702 1 HOH HOH . 
EA 7 HOH A 3 703 8 HOH HOH . 
FA 7 HOH B 1 701 11 HOH HOH . 
FA 7 HOH B 2 702 13 HOH HOH . 
FA 7 HOH B 3 703 10 HOH HOH . 
FA 7 HOH B 4 704 5 HOH HOH . 
FA 7 HOH B 5 705 7 HOH HOH . 
FA 7 HOH B 6 706 4 HOH HOH . 
GA 7 HOH C 1 701 3 HOH HOH . 
HA 7 HOH D 1 701 12 HOH HOH . 
HA 7 HOH D 2 702 14 HOH HOH . 
HA 7 HOH D 3 703 2 HOH HOH . 
HA 7 HOH D 4 704 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OG1 . . . W 4 -87.184 -87.48 68.92 1 83.6 ? C1 OG1 603 D 1 
HETATM 2 C C10 OG1 . . . W 4 -86.54 -89.265 62.794 1 53.72 ? C10 OG1 603 D 1 
HETATM 3 C C11 OG1 . . . W 4 -86.038 -90.412 63.456 1 61.65 ? C11 OG1 603 D 1 
HETATM 4 C C12 OG1 . . . W 4 -86.417 -90.645 64.797 1 56.61 ? C12 OG1 603 D 1 
HETATM 5 C C13 OG1 . . . W 4 -87.295 -89.755 65.447 1 60.25 ? C13 OG1 603 D 1 
HETATM 6 C C14 OG1 . . . W 4 -85.092 -91.353 62.761 1 62.53 ? C14 OG1 603 D 1 
HETATM 7 C C15 OG1 . . . W 4 -84.291 -91.904 60.433 1 64 ? C15 OG1 603 D 1 
HETATM 8 C C16 OG1 . . . W 4 -83.136 -91.235 59.978 1 60.99 ? C16 OG1 603 D 1 
HETATM 9 C C17 OG1 . . . W 4 -82.29 -91.793 59.012 1 80.21 ? C17 OG1 603 D 1 
HETATM 10 C C18 OG1 . . . W 4 -82.594 -93.051 58.465 1 92.14 ? C18 OG1 603 D 1 
HETATM 11 C C19 OG1 . . . W 4 -83.744 -93.734 58.898 1 85.92 ? C19 OG1 603 D 1 
HETATM 12 C C2 OG1 . . . W 4 -87.082 -87.326 67.562 1 77.45 ? C2 OG1 603 D 1 
HETATM 13 C C20 OG1 . . . W 4 -84.611 -93.184 59.876 1 77.72 ? C20 OG1 603 D 1 
HETATM 14 C C21 OG1 . . . W 4 -85.817 -94.007 60.265 1 91.37 ? C21 OG1 603 D 1 
HETATM 15 C C22 OG1 . . . W 4 -81.115 -91.048 58.6 1 84.02 ? C22 OG1 603 D 1 
HETATM 16 C C3 OG1 . . . W 4 -85.771 -86.88 67.037 1 76.1 ? C3 OG1 603 D 1 
HETATM 17 C C4 OG1 . . . W 4 -85.041 -86.866 69.338 1 74.45 ? C4 OG1 603 D 1 
HETATM 18 C C5 OG1 . . . W 4 -88.356 -87.662 66.986 1 68.82 ? C5 OG1 603 D 1 
HETATM 19 C C6 OG1 . . . W 4 -89.178 -88.01 68.032 1 68.81 ? C6 OG1 603 D 1 
HETATM 20 C C7 OG1 . . . W 4 -88.734 -87.665 65.523 1 66.45 ? C7 OG1 603 D 1 
HETATM 21 C C8 OG1 . . . W 4 -87.801 -88.614 64.783 1 66.42 ? C8 OG1 603 D 1 
HETATM 22 C C9 OG1 . . . W 4 -87.416 -88.372 63.449 1 60.54 ? C9 OG1 603 D 1 
HETATM 23 N N1 OG1 . . . W 4 -86.177 -87.257 69.849 1 79.12 ? N1 OG1 603 D 1 
HETATM 24 N N2 OG1 . . . W 4 -84.817 -86.672 67.965 1 65.81 ? N2 OG1 603 D 1 
HETATM 25 N N3 OG1 . . . W 4 -88.46 -87.895 69.207 1 89.43 ? N3 OG1 603 D 1 
HETATM 26 N N4 OG1 . . . W 4 -83.912 -86.587 70.08 1 66.04 ? N4 OG1 603 D 1 
HETATM 27 N N5 OG1 . . . W 4 -85.073 -91.23 61.42 1 67.95 ? N5 OG1 603 D 1 
HETATM 28 N N6 OG1 . . . W 4 -80.185 -90.438 58.285 1 69.02 ? N6 OG1 603 D 1 
HETATM 29 O O1 OG1 . . . W 4 -85.56 -86.708 65.839 1 80.9 ? O1 OG1 603 D 1 
HETATM 30 O O2 OG1 . . . W 4 -84.406 -92.143 63.412 1 50.16 ? O2 OG1 603 D 1 
HETATM 31 O O3 OG1 . . . W 4 -86.374 -94.695 59.222 1 70.28 -1 O3 OG1 603 D 1 
HETATM 32 O O4 OG1 . . . W 4 -86.25 -94.062 61.414 1 102.65 ? O4 OG1 603 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#