data_6PFH
#
_model_server_result.job_id            yxQm8Yu0VYJQelHOxSDtxQ 
_model_server_result.datetime_utc      '2024-11-13 12:28:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":603}' 
#
_entry.id    6PFH 
#
_exptl.entry_id    6PFH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              442.427 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanophenyl]acetic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.43 
_cell.angle_gamma         90 
_cell.entry_id            6PFH 
_cell.length_a            214.11 
_cell.length_b            116.936 
_cell.length_c            221.376 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M 1 1 
C,N,O,P,Q 2 1,2 
D,E,R,S,T,U,V,W,X,Y 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -62.846151 0 661.147761 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C23 H18 N6 O4' 
_chem_comp.formula_weight    442.427 
_chem_comp.id                OFD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanophenyl]acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C1 OFD sing 374 n n 
N2 C1 OFD doub 375 n n 
N2 C2 OFD sing 376 n n 
C1 N1 OFD sing 377 n n 
N3 C2 OFD sing 378 n y 
N3 C6 OFD sing 379 n y 
C2 C3 OFD doub 380 n y 
O2 C14 OFD doub 381 n n 
N1 C4 OFD sing 382 n n 
C10 C9 OFD doub 383 n y 
C10 C11 OFD sing 384 n y 
C6 C5 OFD doub 385 n y 
C22 C16 OFD sing 386 n n 
C22 C23 OFD sing 387 n n 
C3 C4 OFD sing 388 n n 
C3 C5 OFD sing 389 n y 
C9 C8 OFD sing 390 n y 
C14 C11 OFD sing 391 n n 
C14 N5 OFD sing 392 n n 
C4 O1 OFD doub 393 n n 
O3 C23 OFD doub 394 n n 
C17 C16 OFD doub 395 n y 
C17 C18 OFD sing 396 n y 
C16 C15 OFD sing 397 n y 
C5 C7 OFD sing 398 n n 
C23 O4 OFD sing 399 n n 
C11 C12 OFD doub 400 n y 
C18 C19 OFD doub 401 n y 
C15 N5 OFD sing 402 n n 
C15 C20 OFD doub 403 n y 
C8 C7 OFD sing 404 n n 
C8 C13 OFD doub 405 n y 
C19 C20 OFD sing 406 n y 
C19 C21 OFD sing 407 n n 
C12 C13 OFD sing 408 n y 
C21 N6 OFD trip 409 n n 
C6 H1 OFD sing 410 n n 
C7 H2 OFD sing 411 n n 
C7 H3 OFD sing 412 n n 
C9 H4 OFD sing 413 n n 
C10 H5 OFD sing 414 n n 
C12 H6 OFD sing 415 n n 
C13 H7 OFD sing 416 n n 
C17 H8 OFD sing 417 n n 
C18 H9 OFD sing 418 n n 
C20 H10 OFD sing 419 n n 
C22 H11 OFD sing 420 n n 
C22 H12 OFD sing 421 n n 
N1 H13 OFD sing 422 n n 
N3 H14 OFD sing 423 n n 
N4 H15 OFD sing 424 n n 
N4 H16 OFD sing 425 n n 
N5 H17 OFD sing 426 n n 
O4 H18 OFD sing 427 n n 
#
_atom_sites.entry_id                     6PFH 
_atom_sites.fract_transf_matrix[1][1]    0.00467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008552 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OFD A 1 603 603 OFD T25 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OFD B 1 603 603 OFD T25 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OFD C 1 603 603 OFD T25 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OFD D 1 603 603 OFD T25 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OFD E 1 603 603 OFD T25 . 
Y 5 MTX E 1 604 604 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 OFD . . . P 4 -14.355 97.685 322.426 1 113.03 ? O1 OFD 603 C 1 
HETATM 2 C C1 OFD . . . P 4 -12.679 95.852 324.932 1 109.93 ? C1 OFD 603 C 1 
HETATM 3 O O2 OFD . . . P 4 -10.623 97.995 317.467 1 98.49 ? O2 OFD 603 C 1 
HETATM 4 C C2 OFD . . . P 4 -13.704 94.362 323.569 1 106.11 ? C2 OFD 603 C 1 
HETATM 5 C C3 OFD . . . P 4 -14.236 95.323 322.752 1 108.81 ? C3 OFD 603 C 1 
HETATM 6 C C4 OFD . . . P 4 -13.939 96.734 323.082 1 103.39 ? C4 OFD 603 C 1 
HETATM 7 C C5 OFD . . . P 4 -14.981 94.645 321.734 1 114.15 ? C5 OFD 603 C 1 
HETATM 8 C C6 OFD . . . P 4 -14.875 93.296 321.971 1 106.2 ? C6 OFD 603 C 1 
HETATM 9 C C7 OFD . . . P 4 -15.739 95.276 320.599 1 114.45 ? C7 OFD 603 C 1 
HETATM 10 C C8 OFD . . . P 4 -14.749 96.038 319.765 1 96.25 ? C8 OFD 603 C 1 
HETATM 11 C C9 OFD . . . P 4 -13.439 95.539 319.615 1 95.03 ? C9 OFD 603 C 1 
HETATM 12 C C10 OFD . . . P 4 -12.493 96.246 318.85 1 99.04 ? C10 OFD 603 C 1 
HETATM 13 C C11 OFD . . . P 4 -12.858 97.449 318.217 1 96.6 ? C11 OFD 603 C 1 
HETATM 14 C C12 OFD . . . P 4 -14.164 97.959 318.373 1 81.74 ? C12 OFD 603 C 1 
HETATM 15 O O3 OFD . . . P 4 -11.313 96.709 312.417 1 119.39 ? O3 OFD 603 C 1 
HETATM 16 C C13 OFD . . . P 4 -15.111 97.251 319.144 1 82.31 ? C13 OFD 603 C 1 
HETATM 17 C C14 OFD . . . P 4 -11.833 98.199 317.417 1 105.11 ? C14 OFD 603 C 1 
HETATM 18 C C15 OFD . . . P 4 -11.632 100.033 315.741 1 114.78 ? C15 OFD 603 C 1 
HETATM 19 C C16 OFD . . . P 4 -10.845 99.591 314.648 1 118.39 ? C16 OFD 603 C 1 
HETATM 20 C C17 OFD . . . P 4 -10.157 100.54 313.859 1 118.28 ? C17 OFD 603 C 1 
HETATM 21 C C18 OFD . . . P 4 -10.252 101.916 314.146 1 125.23 ? C18 OFD 603 C 1 
HETATM 22 C C19 OFD . . . P 4 -11.034 102.35 315.233 1 132.54 ? C19 OFD 603 C 1 
HETATM 23 C C20 OFD . . . P 4 -11.716 101.41 316.025 1 116.47 ? C20 OFD 603 C 1 
HETATM 24 C C21 OFD . . . P 4 -11.147 103.809 315.557 1 119.41 ? C21 OFD 603 C 1 
HETATM 25 C C22 OFD . . . P 4 -10.716 98.131 314.311 1 118.17 ? C22 OFD 603 C 1 
HETATM 26 C C23 OFD . . . P 4 -11.319 97.801 312.976 1 129.94 ? C23 OFD 603 C 1 
HETATM 27 N N1 OFD . . . P 4 -13.17 96.917 324.163 1 94.81 ? N1 OFD 603 C 1 
HETATM 28 N N2 OFD . . . P 4 -12.912 94.591 324.682 1 116.77 ? N2 OFD 603 C 1 
HETATM 29 N N3 OFD . . . P 4 -14.091 93.13 323.1 1 104.96 ? N3 OFD 603 C 1 
HETATM 30 N N4 OFD . . . P 4 -11.864 96.287 326.063 1 95.56 ? N4 OFD 603 C 1 
HETATM 31 N N5 OFD . . . P 4 -12.369 99.125 316.619 1 104.23 ? N5 OFD 603 C 1 
HETATM 32 N N6 OFD . . . P 4 -11.237 104.932 315.812 1 100.89 ? N6 OFD 603 C 1 
HETATM 33 O O4 OFD . . . P 4 -11.899 98.905 312.439 1 135.12 -1 O4 OFD 603 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           33 
#