data_6PFI # _model_server_result.job_id yIu1h_yRhpDRag0a3MDwzQ _model_server_result.datetime_utc '2024-11-14 05:01:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6PFI # _exptl.entry_id 6PFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 6PFI _cell.length_a 213.38 _cell.length_b 116.741 _cell.length_c 221.58 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 C,D,N,O,P,Q,R,S,T,U,BA,CA 2 1 E,V,W,X,Y,DA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.38 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 6PFI _atom_sites.fract_transf_matrix[1][1] 0.004686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEP A 1 603 603 OEP T26 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEP B 1 603 603 OEP T26 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEP C 1 603 603 OEP T26 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEP D 1 603 603 OEP T26 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEP E 1 603 603 OEP T26 . Y 5 MTX E 1 604 604 MTX MTX . Z 6 HOH A 1 701 29 HOH HOH . Z 6 HOH A 2 702 9 HOH HOH . Z 6 HOH A 3 703 25 HOH HOH . Z 6 HOH A 4 704 21 HOH HOH . Z 6 HOH A 5 705 4 HOH HOH . Z 6 HOH A 6 706 1 HOH HOH . Z 6 HOH A 7 707 2 HOH HOH . Z 6 HOH A 8 708 7 HOH HOH . AA 6 HOH B 1 701 10 HOH HOH . AA 6 HOH B 2 702 13 HOH HOH . AA 6 HOH B 3 703 26 HOH HOH . AA 6 HOH B 4 704 18 HOH HOH . AA 6 HOH B 5 705 27 HOH HOH . AA 6 HOH B 6 706 17 HOH HOH . AA 6 HOH B 7 707 22 HOH HOH . AA 6 HOH B 8 708 14 HOH HOH . BA 6 HOH C 1 701 30 HOH HOH . BA 6 HOH C 2 702 20 HOH HOH . BA 6 HOH C 3 703 5 HOH HOH . BA 6 HOH C 4 704 3 HOH HOH . CA 6 HOH D 1 701 24 HOH HOH . CA 6 HOH D 2 702 8 HOH HOH . CA 6 HOH D 3 703 6 HOH HOH . CA 6 HOH D 4 704 15 HOH HOH . DA 6 HOH E 1 701 19 HOH HOH . DA 6 HOH E 2 702 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 2 7.263 -45.015 87.316 1 58.15 ? PA NDP 601 A 1 HETATM 2 O O1A NDP . . . F 2 6.29 -45.286 86.189 1 67.01 ? O1A NDP 601 A 1 HETATM 3 O O2A NDP . . . F 2 6.591 -45.292 88.63 1 60.94 ? O2A NDP 601 A 1 HETATM 4 O O5B NDP . . . F 2 8.47 -45.95 87.198 1 61.43 ? O5B NDP 601 A 1 HETATM 5 C C5B NDP . . . F 2 9.262 -45.922 86.044 1 69.38 ? C5B NDP 601 A 1 HETATM 6 C C4B NDP . . . F 2 10.456 -46.777 86.038 1 67.98 ? C4B NDP 601 A 1 HETATM 7 O O4B NDP . . . F 2 10.079 -48.129 85.891 1 75.28 ? O4B NDP 601 A 1 HETATM 8 C C3B NDP . . . F 2 11.328 -46.499 84.897 1 61.07 ? C3B NDP 601 A 1 HETATM 9 O O3B NDP . . . F 2 12.214 -45.474 85.174 1 66.46 ? O3B NDP 601 A 1 HETATM 10 C C2B NDP . . . F 2 12.018 -47.753 84.748 1 62.64 ? C2B NDP 601 A 1 HETATM 11 O O2B NDP . . . F 2 12.968 -47.902 85.762 1 63.98 ? O2B NDP 601 A 1 HETATM 12 C C1B NDP . . . F 2 10.958 -48.72 84.951 1 66.68 ? C1B NDP 601 A 1 HETATM 13 N N9A NDP . . . F 2 10.276 -48.939 83.728 1 67.77 ? N9A NDP 601 A 1 HETATM 14 C C8A NDP . . . F 2 9.182 -48.265 83.299 1 68.26 ? C8A NDP 601 A 1 HETATM 15 N N7A NDP . . . F 2 8.807 -48.74 82.095 1 75.21 ? N7A NDP 601 A 1 HETATM 16 C C5A NDP . . . F 2 9.676 -49.744 81.742 1 73.95 ? C5A NDP 601 A 1 HETATM 17 C C6A NDP . . . F 2 9.793 -50.6 80.623 1 66.55 ? C6A NDP 601 A 1 HETATM 18 N N6A NDP . . . F 2 8.812 -50.478 79.516 1 72.93 ? N6A NDP 601 A 1 HETATM 19 N N1A NDP . . . F 2 10.793 -51.522 80.566 1 62.42 ? N1A NDP 601 A 1 HETATM 20 C C2A NDP . . . F 2 11.675 -51.605 81.6 1 69.53 ? C2A NDP 601 A 1 HETATM 21 N N3A NDP . . . F 2 11.604 -50.821 82.679 1 68.38 ? N3A NDP 601 A 1 HETATM 22 C C4A NDP . . . F 2 10.604 -49.87 82.778 1 69.88 ? C4A NDP 601 A 1 HETATM 23 O O3 NDP . . . F 2 7.743 -43.494 87.288 1 63.72 ? O3 NDP 601 A 1 HETATM 24 P PN NDP . . . F 2 6.711 -42.289 87.157 1 57.87 ? PN NDP 601 A 1 HETATM 25 O O1N NDP . . . F 2 7.455 -40.946 87.213 1 78.28 ? O1N NDP 601 A 1 HETATM 26 O O2N NDP . . . F 2 5.991 -42.374 85.828 1 62.22 ? O2N NDP 601 A 1 HETATM 27 O O5D NDP . . . F 2 5.652 -42.409 88.38 1 49.75 ? O5D NDP 601 A 1 HETATM 28 C C5D NDP . . . F 2 5.976 -41.951 89.665 1 50.41 ? C5D NDP 601 A 1 HETATM 29 C C4D NDP . . . F 2 5.234 -40.802 90.156 1 58.45 ? C4D NDP 601 A 1 HETATM 30 O O4D NDP . . . F 2 3.839 -41.068 90.024 1 54.36 ? O4D NDP 601 A 1 HETATM 31 C C3D NDP . . . F 2 5.481 -40.571 91.585 1 58.68 ? C3D NDP 601 A 1 HETATM 32 O O3D NDP . . . F 2 5.397 -39.21 91.867 1 54.7 ? O3D NDP 601 A 1 HETATM 33 C C2D NDP . . . F 2 4.418 -41.264 92.233 1 57.05 ? C2D NDP 601 A 1 HETATM 34 O O2D NDP . . . F 2 4.133 -40.695 93.474 1 54.22 ? O2D NDP 601 A 1 HETATM 35 C C1D NDP . . . F 2 3.288 -41.086 91.298 1 55.29 ? C1D NDP 601 A 1 HETATM 36 N N1N NDP . . . F 2 2.335 -42.141 91.471 1 55.81 ? N1N NDP 601 A 1 HETATM 37 C C2N NDP . . . F 2 1.049 -41.81 91.688 1 50.69 ? C2N NDP 601 A 1 HETATM 38 C C3N NDP . . . F 2 0.069 -42.798 91.866 1 55.06 ? C3N NDP 601 A 1 HETATM 39 C C7N NDP . . . F 2 -1.368 -42.366 92.105 1 61.67 ? C7N NDP 601 A 1 HETATM 40 O O7N NDP . . . F 2 -2.273 -43.217 92.121 1 61.79 ? O7N NDP 601 A 1 HETATM 41 N N7N NDP . . . F 2 -1.698 -40.985 92.314 1 62.51 ? N7N NDP 601 A 1 HETATM 42 C C4N NDP . . . F 2 0.434 -44.157 91.82 1 55.72 ? C4N NDP 601 A 1 HETATM 43 C C5N NDP . . . F 2 1.784 -44.465 91.593 1 54.94 ? C5N NDP 601 A 1 HETATM 44 C C6N NDP . . . F 2 2.726 -43.453 91.421 1 54.3 ? C6N NDP 601 A 1 HETATM 45 P P2B NDP . . . F 2 14.459 -48.192 85.42 1 75.29 ? P2B NDP 601 A 1 HETATM 46 O O1X NDP . . . F 2 15.23 -46.863 85.502 1 77.87 ? O1X NDP 601 A 1 HETATM 47 O O2X NDP . . . F 2 15.01 -49.145 86.4 1 61.57 ? O2X NDP 601 A 1 HETATM 48 O O3X NDP . . . F 2 14.582 -48.78 84.05 1 78.23 ? O3X NDP 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #