data_6PFI # _model_server_result.job_id z4IMk5LQN3_zZwt1yUA-9g _model_server_result.datetime_utc '2024-11-28 22:56:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 6PFI # _exptl.entry_id 6PFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 6PFI _cell.length_a 213.38 _cell.length_b 116.741 _cell.length_c 221.58 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 C,D,N,O,P,Q,R,S,T,U,BA,CA 2 1 E,V,W,X,Y,DA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.38 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 N N N ? 2 R N N ? 2 V N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 6PFI _atom_sites.fract_transf_matrix[1][1] 0.004686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEP A 1 603 603 OEP T26 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEP B 1 603 603 OEP T26 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEP C 1 603 603 OEP T26 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEP D 1 603 603 OEP T26 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEP E 1 603 603 OEP T26 . Y 5 MTX E 1 604 604 MTX MTX . Z 6 HOH A 1 701 29 HOH HOH . Z 6 HOH A 2 702 9 HOH HOH . Z 6 HOH A 3 703 25 HOH HOH . Z 6 HOH A 4 704 21 HOH HOH . Z 6 HOH A 5 705 4 HOH HOH . Z 6 HOH A 6 706 1 HOH HOH . Z 6 HOH A 7 707 2 HOH HOH . Z 6 HOH A 8 708 7 HOH HOH . AA 6 HOH B 1 701 10 HOH HOH . AA 6 HOH B 2 702 13 HOH HOH . AA 6 HOH B 3 703 26 HOH HOH . AA 6 HOH B 4 704 18 HOH HOH . AA 6 HOH B 5 705 27 HOH HOH . AA 6 HOH B 6 706 17 HOH HOH . AA 6 HOH B 7 707 22 HOH HOH . AA 6 HOH B 8 708 14 HOH HOH . BA 6 HOH C 1 701 30 HOH HOH . BA 6 HOH C 2 702 20 HOH HOH . BA 6 HOH C 3 703 5 HOH HOH . BA 6 HOH C 4 704 3 HOH HOH . CA 6 HOH D 1 701 24 HOH HOH . CA 6 HOH D 2 702 8 HOH HOH . CA 6 HOH D 3 703 6 HOH HOH . CA 6 HOH D 4 704 15 HOH HOH . DA 6 HOH E 1 701 19 HOH HOH . DA 6 HOH E 2 702 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . R 2 -72.058 -85.762 16.713 1 79.78 ? PA NDP 601 D 1 HETATM 2 O O1A NDP . . . R 2 -70.993 -85.599 17.779 1 89.03 ? O1A NDP 601 D 1 HETATM 3 O O2A NDP . . . R 2 -73.097 -84.694 16.89 1 69.61 ? O2A NDP 601 D 1 HETATM 4 O O5B NDP . . . R 2 -71.435 -85.595 15.32 1 74.34 ? O5B NDP 601 D 1 HETATM 5 C C5B NDP . . . R 2 -70.403 -86.432 14.865 1 78.99 ? C5B NDP 601 D 1 HETATM 6 C C4B NDP . . . R 2 -69.961 -86.228 13.475 1 83.31 ? C4B NDP 601 D 1 HETATM 7 O O4B NDP . . . R 2 -69.19 -85.048 13.38 1 88.45 ? O4B NDP 601 D 1 HETATM 8 C C3B NDP . . . R 2 -69.079 -87.286 12.973 1 80.18 ? C3B NDP 601 D 1 HETATM 9 O O3B NDP . . . R 2 -69.784 -88.382 12.501 1 69.61 ? O3B NDP 601 D 1 HETATM 10 C C2B NDP . . . R 2 -68.396 -86.603 11.902 1 92.9 ? C2B NDP 601 D 1 HETATM 11 O O2B NDP . . . R 2 -69.24 -86.406 10.802 1 99.29 ? O2B NDP 601 D 1 HETATM 12 C C1B NDP . . . R 2 -68.123 -85.302 12.482 1 90.22 ? C1B NDP 601 D 1 HETATM 13 N N9A NDP . . . R 2 -66.879 -85.316 13.17 1 92.97 ? N9A NDP 601 D 1 HETATM 14 C C8A NDP . . . R 2 -66.692 -85.596 14.483 1 88.67 ? C8A NDP 601 D 1 HETATM 15 N N7A NDP . . . R 2 -65.379 -85.505 14.777 1 100.42 ? N7A NDP 601 D 1 HETATM 16 C C5A NDP . . . R 2 -64.702 -85.155 13.631 1 95.08 ? C5A NDP 601 D 1 HETATM 17 C C6A NDP . . . R 2 -63.342 -84.914 13.311 1 89.17 ? C6A NDP 601 D 1 HETATM 18 N N6A NDP . . . R 2 -62.305 -85.035 14.367 1 103.64 ? N6A NDP 601 D 1 HETATM 19 N N1A NDP . . . R 2 -62.987 -84.574 12.043 1 87.16 ? N1A NDP 601 D 1 HETATM 20 C C2A NDP . . . R 2 -63.952 -84.471 11.09 1 92.95 ? C2A NDP 601 D 1 HETATM 21 N N3A NDP . . . R 2 -65.246 -84.687 11.342 1 93 ? N3A NDP 601 D 1 HETATM 22 C C4A NDP . . . R 2 -65.656 -85.034 12.617 1 95.19 ? C4A NDP 601 D 1 HETATM 23 O O3 NDP . . . R 2 -72.758 -87.188 16.843 1 76.38 ? O3 NDP 601 D 1 HETATM 24 P PN NDP . . . R 2 -73.292 -87.728 18.242 1 73.2 ? PN NDP 601 D 1 HETATM 25 O O1N NDP . . . R 2 -73.941 -89.111 18.079 1 71.92 ? O1N NDP 601 D 1 HETATM 26 O O2N NDP . . . R 2 -72.127 -87.846 19.2 1 81.88 ? O2N NDP 601 D 1 HETATM 27 O O5D NDP . . . R 2 -74.408 -86.705 18.824 1 63.09 ? O5D NDP 601 D 1 HETATM 28 C C5D NDP . . . R 2 -75.755 -86.883 18.468 1 71.91 ? C5D NDP 601 D 1 HETATM 29 C C4D NDP . . . R 2 -76.688 -87.298 19.505 1 71.89 ? C4D NDP 601 D 1 HETATM 30 O O4D NDP . . . R 2 -76.501 -86.497 20.669 1 77.01 ? O4D NDP 601 D 1 HETATM 31 C C3D NDP . . . R 2 -78.08 -87.085 19.094 1 76.46 ? C3D NDP 601 D 1 HETATM 32 O O3D NDP . . . R 2 -78.908 -87.979 19.764 1 76.86 ? O3D NDP 601 D 1 HETATM 33 C C2D NDP . . . R 2 -78.363 -85.768 19.547 1 73.53 ? C2D NDP 601 D 1 HETATM 34 O O2D NDP . . . R 2 -79.739 -85.607 19.712 1 67.44 ? O2D NDP 601 D 1 HETATM 35 C C1D NDP . . . R 2 -77.642 -85.723 20.837 1 69.27 ? C1D NDP 601 D 1 HETATM 36 N N1N NDP . . . R 2 -77.302 -84.382 21.201 1 70.3 ? N1N NDP 601 D 1 HETATM 37 C C2N NDP . . . R 2 -77.585 -83.974 22.449 1 71.82 ? C2N NDP 601 D 1 HETATM 38 C C3N NDP . . . R 2 -77.276 -82.674 22.872 1 78.84 ? C3N NDP 601 D 1 HETATM 39 C C7N NDP . . . R 2 -77.622 -82.267 24.295 1 72.1 ? C7N NDP 601 D 1 HETATM 40 O O7N NDP . . . R 2 -77.228 -81.174 24.732 1 66.69 ? O7N NDP 601 D 1 HETATM 41 N N7N NDP . . . R 2 -78.399 -83.124 25.146 1 59.58 ? N7N NDP 601 D 1 HETATM 42 C C4N NDP . . . R 2 -76.655 -81.781 21.978 1 75.42 ? C4N NDP 601 D 1 HETATM 43 C C5N NDP . . . R 2 -76.373 -82.24 20.685 1 74.8 ? C5N NDP 601 D 1 HETATM 44 C C6N NDP . . . R 2 -76.698 -83.541 20.306 1 79.44 ? C6N NDP 601 D 1 HETATM 45 P P2B NDP . . . R 2 -68.921 -87.015 9.4 1 92.85 ? P2B NDP 601 D 1 HETATM 46 O O1X NDP . . . R 2 -69.76 -88.297 9.223 1 73.46 ? O1X NDP 601 D 1 HETATM 47 O O2X NDP . . . R 2 -69.268 -86.031 8.361 1 75.59 ? O2X NDP 601 D 1 HETATM 48 O O3X NDP . . . R 2 -67.468 -87.339 9.271 1 84.21 ? O3X NDP 601 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #