data_6PFI # _model_server_result.job_id PjZTDOLLZyrPocW2wNF16A _model_server_result.datetime_utc '2024-11-25 06:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6PFI # _exptl.entry_id 6PFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.427 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-(carboxymethyl)benzoic acid' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 6PFI _cell.length_a 213.38 _cell.length_b 116.741 _cell.length_c 221.58 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 C,D,N,O,P,Q,R,S,T,U,BA,CA 2 1 E,V,W,X,Y,DA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.38 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N # _chem_comp.formula 'C23 H19 N5 O6' _chem_comp.formula_weight 461.427 _chem_comp.id OEP _chem_comp.mon_nstd_flag . _chem_comp.name '3-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-(carboxymethyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C21 OEP doub 376 n n C21 C19 OEP sing 377 n n C21 O4 OEP sing 378 n n C18 C19 OEP doub 379 n y C18 C17 OEP sing 380 n y C19 C20 OEP sing 381 n y C17 C16 OEP doub 382 n y N4 C4 OEP sing 383 n n O2 C14 OEP doub 384 n n C20 C15 OEP doub 385 n y C16 C15 OEP sing 386 n y C16 C22 OEP sing 387 n n O6 C23 OEP doub 388 n n C15 N5 OEP sing 389 n n C22 C23 OEP sing 390 n n C14 N5 OEP sing 391 n n C14 C11 OEP sing 392 n n C4 N2 OEP sing 393 n n C4 N1 OEP doub 394 n n C23 O5 OEP sing 395 n n N2 C3 OEP sing 396 n n N1 C1 OEP sing 397 n n C10 C11 OEP doub 398 n y C10 C9 OEP sing 399 n y C11 C12 OEP sing 400 n y C3 O1 OEP doub 401 n n C3 C2 OEP sing 402 n n C1 C2 OEP doub 403 n y C1 N3 OEP sing 404 n y C9 C8 OEP doub 405 n y C12 C13 OEP doub 406 n y C2 C5 OEP sing 407 n y N3 C6 OEP sing 408 n y C8 C13 OEP sing 409 n y C8 C7 OEP sing 410 n n C5 C6 OEP doub 411 n y C5 C7 OEP sing 412 n n C10 H1 OEP sing 413 n n C12 H2 OEP sing 414 n n C13 H3 OEP sing 415 n n C17 H4 OEP sing 416 n n C18 H5 OEP sing 417 n n C20 H6 OEP sing 418 n n C22 H7 OEP sing 419 n n C22 H8 OEP sing 420 n n C6 H9 OEP sing 421 n n C7 H10 OEP sing 422 n n C7 H11 OEP sing 423 n n C9 H12 OEP sing 424 n n N2 H13 OEP sing 425 n n N3 H14 OEP sing 426 n n N4 H15 OEP sing 427 n n N4 H16 OEP sing 428 n n N5 H17 OEP sing 429 n n O4 H18 OEP sing 430 n n O5 H19 OEP sing 431 n n # _atom_sites.entry_id 6PFI _atom_sites.fract_transf_matrix[1][1] 0.004686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NDP A 1 601 601 NDP NDP . G 3 UFP A 1 602 602 UFP UFP . H 4 OEP A 1 603 603 OEP T26 . I 5 MTX A 1 604 604 MTX MTX . J 2 NDP B 1 601 601 NDP NDP . K 3 UFP B 1 602 602 UFP UFP . L 4 OEP B 1 603 603 OEP T26 . M 5 MTX B 1 604 604 MTX MTX . N 2 NDP C 1 601 601 NDP NDP . O 3 UFP C 1 602 602 UFP UFP . P 4 OEP C 1 603 603 OEP T26 . Q 5 MTX C 1 604 604 MTX MTX . R 2 NDP D 1 601 601 NDP NDP . S 3 UFP D 1 602 602 UFP UFP . T 4 OEP D 1 603 603 OEP T26 . U 5 MTX D 1 604 604 MTX MTX . V 2 NDP E 1 601 601 NDP NDP . W 3 UFP E 1 602 602 UFP UFP . X 4 OEP E 1 603 603 OEP T26 . Y 5 MTX E 1 604 604 MTX MTX . Z 6 HOH A 1 701 29 HOH HOH . Z 6 HOH A 2 702 9 HOH HOH . Z 6 HOH A 3 703 25 HOH HOH . Z 6 HOH A 4 704 21 HOH HOH . Z 6 HOH A 5 705 4 HOH HOH . Z 6 HOH A 6 706 1 HOH HOH . Z 6 HOH A 7 707 2 HOH HOH . Z 6 HOH A 8 708 7 HOH HOH . AA 6 HOH B 1 701 10 HOH HOH . AA 6 HOH B 2 702 13 HOH HOH . AA 6 HOH B 3 703 26 HOH HOH . AA 6 HOH B 4 704 18 HOH HOH . AA 6 HOH B 5 705 27 HOH HOH . AA 6 HOH B 6 706 17 HOH HOH . AA 6 HOH B 7 707 22 HOH HOH . AA 6 HOH B 8 708 14 HOH HOH . BA 6 HOH C 1 701 30 HOH HOH . BA 6 HOH C 2 702 20 HOH HOH . BA 6 HOH C 3 703 5 HOH HOH . BA 6 HOH C 4 704 3 HOH HOH . CA 6 HOH D 1 701 24 HOH HOH . CA 6 HOH D 2 702 8 HOH HOH . CA 6 HOH D 3 703 6 HOH HOH . CA 6 HOH D 4 704 15 HOH HOH . DA 6 HOH E 1 701 19 HOH HOH . DA 6 HOH E 2 702 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OEP . . . H 4 -39.066 -17.404 88.838 1 74.97 ? C1 OEP 603 A 1 HETATM 2 C C10 OEP . . . H 4 -33.965 -16.42 87.971 1 73.99 ? C10 OEP 603 A 1 HETATM 3 C C11 OEP . . . H 4 -32.869 -17.275 87.977 1 77.44 ? C11 OEP 603 A 1 HETATM 4 C C12 OEP . . . H 4 -32.792 -18.288 88.929 1 51.28 ? C12 OEP 603 A 1 HETATM 5 C C13 OEP . . . H 4 -33.796 -18.44 89.881 1 60.14 ? C13 OEP 603 A 1 HETATM 6 C C14 OEP . . . H 4 -31.778 -17.134 86.953 1 84.47 ? C14 OEP 603 A 1 HETATM 7 C C15 OEP . . . H 4 -29.569 -18.286 86.463 1 88.2 ? C15 OEP 603 A 1 HETATM 8 C C16 OEP . . . H 4 -28.597 -17.33 86.147 1 107.09 ? C16 OEP 603 A 1 HETATM 9 C C17 OEP . . . H 4 -27.459 -17.728 85.446 1 112.99 ? C17 OEP 603 A 1 HETATM 10 C C18 OEP . . . H 4 -27.279 -19.053 85.063 1 100.45 ? C18 OEP 603 A 1 HETATM 11 C C19 OEP . . . H 4 -28.249 -19.993 85.382 1 106.92 ? C19 OEP 603 A 1 HETATM 12 C C2 OEP . . . H 4 -37.863 -18.053 89.111 1 80.59 ? C2 OEP 603 A 1 HETATM 13 C C20 OEP . . . H 4 -29.38 -19.604 86.076 1 92.79 ? C20 OEP 603 A 1 HETATM 14 C C21 OEP . . . H 4 -28.097 -21.432 84.99 1 124.33 ? C21 OEP 603 A 1 HETATM 15 C C22 OEP . . . H 4 -28.728 -15.881 86.533 1 101.31 ? C22 OEP 603 A 1 HETATM 16 C C23 OEP . . . H 4 -27.479 -15.395 87.216 1 95.55 ? C23 OEP 603 A 1 HETATM 17 C C3 OEP . . . H 4 -37.477 -19.175 88.254 1 90.32 ? C3 OEP 603 A 1 HETATM 18 C C4 OEP . . . H 4 -39.595 -18.704 87.072 1 75.84 ? C4 OEP 603 A 1 HETATM 19 C C5 OEP . . . H 4 -37.294 -17.413 90.23 1 71.36 ? C5 OEP 603 A 1 HETATM 20 C C6 OEP . . . H 4 -38.161 -16.387 90.603 1 82.58 ? C6 OEP 603 A 1 HETATM 21 C C7 OEP . . . H 4 -35.987 -17.733 90.898 1 79.91 ? C7 OEP 603 A 1 HETATM 22 C C8 OEP . . . H 4 -34.892 -17.584 89.877 1 69.29 ? C8 OEP 603 A 1 HETATM 23 C C9 OEP . . . H 4 -34.965 -16.569 88.927 1 70.87 ? C9 OEP 603 A 1 HETATM 24 N N1 OEP . . . H 4 -39.935 -17.713 87.833 1 84.65 ? N1 OEP 603 A 1 HETATM 25 N N2 OEP . . . H 4 -38.419 -19.394 87.285 1 70.51 ? N2 OEP 603 A 1 HETATM 26 N N3 OEP . . . H 4 -39.238 -16.4 89.745 1 83.41 ? N3 OEP 603 A 1 HETATM 27 N N4 OEP . . . H 4 -40.433 -19.142 85.96 1 77.09 ? N4 OEP 603 A 1 HETATM 28 N N5 OEP . . . H 4 -30.81 -18.019 87.189 1 81.9 ? N5 OEP 603 A 1 HETATM 29 O O1 OEP . . . H 4 -36.472 -19.881 88.314 1 94.44 ? O1 OEP 603 A 1 HETATM 30 O O2 OEP . . . H 4 -31.761 -16.339 86.016 1 78.43 ? O2 OEP 603 A 1 HETATM 31 O O3 OEP . . . H 4 -27.85 -21.873 83.875 1 102.87 ? O3 OEP 603 A 1 HETATM 32 O O4 OEP . . . H 4 -28.294 -22.219 86.08 1 117.18 -1 O4 OEP 603 A 1 HETATM 33 O O5 OEP . . . H 4 -27.306 -15.22 88.419 1 76.27 ? O5 OEP 603 A 1 HETATM 34 O O6 OEP . . . H 4 -26.508 -15.164 86.294 1 93.43 -1 O6 OEP 603 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #