data_6PFI
#
_model_server_result.job_id            dDbzfIX0Es5tCZZyVOpTzA 
_model_server_result.datetime_utc      '2024-11-14 05:06:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":603}' 
#
_entry.id    6PFI 
#
_exptl.entry_id    6PFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              461.427 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-(carboxymethyl)benzoic acid' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.05 
_cell.angle_gamma         90 
_cell.entry_id            6PFI 
_cell.length_a            213.38 
_cell.length_b            116.741 
_cell.length_c            221.58 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,H,I,J,K,L,M,Z,AA 1 1 
C,D,N,O,P,Q,R,S,T,U,BA,CA 2 1 
E,V,W,X,Y,DA 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -213.38 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
#
_chem_comp.formula           'C23 H19 N5 O6' 
_chem_comp.formula_weight    461.427 
_chem_comp.id                OEP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-(carboxymethyl)benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C21 OEP doub 376 n n 
C21 C19 OEP sing 377 n n 
C21 O4 OEP sing 378 n n 
C18 C19 OEP doub 379 n y 
C18 C17 OEP sing 380 n y 
C19 C20 OEP sing 381 n y 
C17 C16 OEP doub 382 n y 
N4 C4 OEP sing 383 n n 
O2 C14 OEP doub 384 n n 
C20 C15 OEP doub 385 n y 
C16 C15 OEP sing 386 n y 
C16 C22 OEP sing 387 n n 
O6 C23 OEP doub 388 n n 
C15 N5 OEP sing 389 n n 
C22 C23 OEP sing 390 n n 
C14 N5 OEP sing 391 n n 
C14 C11 OEP sing 392 n n 
C4 N2 OEP sing 393 n n 
C4 N1 OEP doub 394 n n 
C23 O5 OEP sing 395 n n 
N2 C3 OEP sing 396 n n 
N1 C1 OEP sing 397 n n 
C10 C11 OEP doub 398 n y 
C10 C9 OEP sing 399 n y 
C11 C12 OEP sing 400 n y 
C3 O1 OEP doub 401 n n 
C3 C2 OEP sing 402 n n 
C1 C2 OEP doub 403 n y 
C1 N3 OEP sing 404 n y 
C9 C8 OEP doub 405 n y 
C12 C13 OEP doub 406 n y 
C2 C5 OEP sing 407 n y 
N3 C6 OEP sing 408 n y 
C8 C13 OEP sing 409 n y 
C8 C7 OEP sing 410 n n 
C5 C6 OEP doub 411 n y 
C5 C7 OEP sing 412 n n 
C10 H1 OEP sing 413 n n 
C12 H2 OEP sing 414 n n 
C13 H3 OEP sing 415 n n 
C17 H4 OEP sing 416 n n 
C18 H5 OEP sing 417 n n 
C20 H6 OEP sing 418 n n 
C22 H7 OEP sing 419 n n 
C22 H8 OEP sing 420 n n 
C6 H9 OEP sing 421 n n 
C7 H10 OEP sing 422 n n 
C7 H11 OEP sing 423 n n 
C9 H12 OEP sing 424 n n 
N2 H13 OEP sing 425 n n 
N3 H14 OEP sing 426 n n 
N4 H15 OEP sing 427 n n 
N4 H16 OEP sing 428 n n 
N5 H17 OEP sing 429 n n 
O4 H18 OEP sing 430 n n 
O5 H19 OEP sing 431 n n 
#
_atom_sites.entry_id                     6PFI 
_atom_sites.fract_transf_matrix[1][1]    0.004686 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 OEP A 1 603 603 OEP T26 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 OEP B 1 603 603 OEP T26 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 OEP C 1 603 603 OEP T26 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 OEP D 1 603 603 OEP T26 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 OEP E 1 603 603 OEP T26 . 
Y 5 MTX E 1 604 604 MTX MTX . 
Z 6 HOH A 1 701 29 HOH HOH . 
Z 6 HOH A 2 702 9 HOH HOH . 
Z 6 HOH A 3 703 25 HOH HOH . 
Z 6 HOH A 4 704 21 HOH HOH . 
Z 6 HOH A 5 705 4 HOH HOH . 
Z 6 HOH A 6 706 1 HOH HOH . 
Z 6 HOH A 7 707 2 HOH HOH . 
Z 6 HOH A 8 708 7 HOH HOH . 
AA 6 HOH B 1 701 10 HOH HOH . 
AA 6 HOH B 2 702 13 HOH HOH . 
AA 6 HOH B 3 703 26 HOH HOH . 
AA 6 HOH B 4 704 18 HOH HOH . 
AA 6 HOH B 5 705 27 HOH HOH . 
AA 6 HOH B 6 706 17 HOH HOH . 
AA 6 HOH B 7 707 22 HOH HOH . 
AA 6 HOH B 8 708 14 HOH HOH . 
BA 6 HOH C 1 701 30 HOH HOH . 
BA 6 HOH C 2 702 20 HOH HOH . 
BA 6 HOH C 3 703 5 HOH HOH . 
BA 6 HOH C 4 704 3 HOH HOH . 
CA 6 HOH D 1 701 24 HOH HOH . 
CA 6 HOH D 2 702 8 HOH HOH . 
CA 6 HOH D 3 703 6 HOH HOH . 
CA 6 HOH D 4 704 15 HOH HOH . 
DA 6 HOH E 1 701 19 HOH HOH . 
DA 6 HOH E 2 702 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OEP . . . X 4 -124.539 -96.175 7.02 1 91.15 ? C1 OEP 603 E 1 
HETATM 2 C C10 OEP . . . X 4 -125.812 -94.44 11.833 1 81.54 ? C10 OEP 603 E 1 
HETATM 3 C C11 OEP . . . X 4 -125.37 -93.296 12.489 1 84.08 ? C11 OEP 603 E 1 
HETATM 4 C C12 OEP . . . X 4 -124.039 -92.909 12.378 1 77.82 ? C12 OEP 603 E 1 
HETATM 5 C C13 OEP . . . X 4 -123.147 -93.668 11.626 1 88.15 ? C13 OEP 603 E 1 
HETATM 6 C C14 OEP . . . X 4 -126.325 -92.459 13.294 1 97.12 ? C14 OEP 603 E 1 
HETATM 7 C C15 OEP . . . X 4 -126.226 -90.349 14.696 1 112.73 ? C15 OEP 603 E 1 
HETATM 8 C C16 OEP . . . X 4 -126.973 -90.521 15.867 1 116.08 ? C16 OEP 603 E 1 
HETATM 9 C C17 OEP . . . X 4 -127.427 -89.399 16.558 1 118.85 ? C17 OEP 603 E 1 
HETATM 10 C C18 OEP . . . X 4 -127.167 -88.116 16.091 1 117.14 ? C18 OEP 603 E 1 
HETATM 11 C C19 OEP . . . X 4 -126.436 -87.952 14.922 1 125.98 ? C19 OEP 603 E 1 
HETATM 12 C C2 OEP . . . X 4 -123.988 -95.313 7.966 1 102.85 ? C2 OEP 603 E 1 
HETATM 13 C C20 OEP . . . X 4 -125.978 -89.063 14.235 1 113.42 ? C20 OEP 603 E 1 
HETATM 14 C C21 OEP . . . X 4 -126.137 -86.585 14.384 1 130.92 ? C21 OEP 603 E 1 
HETATM 15 C C22 OEP . . . X 4 -127.285 -91.877 16.435 1 119.31 ? C22 OEP 603 E 1 
HETATM 16 C C23 OEP . . . X 4 -126.947 -91.911 17.9 1 122 ? C23 OEP 603 E 1 
HETATM 17 C C3 OEP . . . X 4 -124.171 -93.872 7.78 1 99.9 ? C3 OEP 603 E 1 
HETATM 18 C C4 OEP . . . X 4 -125.405 -94.531 5.747 1 81.62 ? C4 OEP 603 E 1 
HETATM 19 C C5 OEP . . . X 4 -123.355 -96.116 8.936 1 98.1 ? C5 OEP 603 E 1 
HETATM 20 C C6 OEP . . . X 4 -123.531 -97.445 8.551 1 100.61 ? C6 OEP 603 E 1 
HETATM 21 C C7 OEP . . . X 4 -122.625 -95.633 10.157 1 94.63 ? C7 OEP 603 E 1 
HETATM 22 C C8 OEP . . . X 4 -123.585 -94.817 10.978 1 82.93 ? C8 OEP 603 E 1 
HETATM 23 C C9 OEP . . . X 4 -124.92 -95.2 11.084 1 71.39 ? C9 OEP 603 E 1 
HETATM 24 N N1 OEP . . . X 4 -125.242 -95.803 5.915 1 97.05 ? N1 OEP 603 E 1 
HETATM 25 N N2 OEP . . . X 4 -124.888 -93.621 6.644 1 79.12 ? N2 OEP 603 E 1 
HETATM 26 N N3 OEP . . . X 4 -124.256 -97.461 7.38 1 94.87 ? N3 OEP 603 E 1 
HETATM 27 N N4 OEP . . . X 4 -126.137 -93.995 4.605 1 92.28 ? N4 OEP 603 E 1 
HETATM 28 N N5 OEP . . . X 4 -125.692 -91.427 13.861 1 109.66 ? N5 OEP 603 E 1 
HETATM 29 O O1 OEP . . . X 4 -123.776 -92.943 8.484 1 98.16 ? O1 OEP 603 E 1 
HETATM 30 O O2 OEP . . . X 4 -127.533 -92.659 13.401 1 81.96 ? O2 OEP 603 E 1 
HETATM 31 O O3 OEP . . . X 4 -126.938 -85.685 14.165 1 106.15 ? O3 OEP 603 E 1 
HETATM 32 O O4 OEP . . . X 4 -124.803 -86.471 14.15 1 134.61 -1 O4 OEP 603 E 1 
HETATM 33 O O5 OEP . . . X 4 -125.956 -92.407 18.426 1 117.11 ? O5 OEP 603 E 1 
HETATM 34 O O6 OEP . . . X 4 -127.931 -91.299 18.612 1 113.38 -1 O6 OEP 603 E 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           34 
#