data_6PFK # _model_server_result.job_id wRPaIWQk5LqktEbnuYYxgQ _model_server_result.datetime_utc '2025-08-31 21:10:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":325}' # _entry.id 6PFK # _exptl.entry_id 6PFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PFK _cell.length_a 132 _cell.length_b 115.2 _cell.length_c 96.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 6PFK _atom_sites.fract_transf_matrix[1][1] 0.007576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PGA A 1 325 325 PGA PGA . F 2 PGA B 1 325 325 PGA PGA . G 2 PGA C 1 325 325 PGA PGA . H 2 PGA D 1 325 325 PGA PGA . I 3 HOH A 1 326 1 HOH HOH . I 3 HOH A 2 327 2 HOH HOH . I 3 HOH A 3 328 4 HOH HOH . I 3 HOH A 4 329 5 HOH HOH . I 3 HOH A 5 330 6 HOH HOH . I 3 HOH A 6 331 7 HOH HOH . I 3 HOH A 7 332 8 HOH HOH . I 3 HOH A 8 333 9 HOH HOH . I 3 HOH A 9 334 10 HOH HOH . I 3 HOH A 10 335 11 HOH HOH . I 3 HOH A 11 336 12 HOH HOH . I 3 HOH A 12 337 13 HOH HOH . I 3 HOH A 13 338 14 HOH HOH . I 3 HOH A 14 339 15 HOH HOH . I 3 HOH A 15 340 17 HOH HOH . I 3 HOH A 16 341 18 HOH HOH . I 3 HOH A 17 342 19 HOH HOH . I 3 HOH A 18 343 20 HOH HOH . I 3 HOH A 19 344 22 HOH HOH . I 3 HOH A 20 345 23 HOH HOH . I 3 HOH A 21 346 24 HOH HOH . I 3 HOH A 22 347 25 HOH HOH . I 3 HOH A 23 348 26 HOH HOH . I 3 HOH A 24 349 28 HOH HOH . I 3 HOH A 25 350 29 HOH HOH . I 3 HOH A 26 351 30 HOH HOH . I 3 HOH A 27 352 32 HOH HOH . I 3 HOH A 28 353 33 HOH HOH . I 3 HOH A 29 354 35 HOH HOH . I 3 HOH A 30 355 36 HOH HOH . I 3 HOH A 31 356 37 HOH HOH . I 3 HOH A 32 357 38 HOH HOH . I 3 HOH A 33 358 40 HOH HOH . I 3 HOH A 34 359 41 HOH HOH . I 3 HOH A 35 360 43 HOH HOH . I 3 HOH A 36 361 47 HOH HOH . I 3 HOH A 37 362 48 HOH HOH . I 3 HOH A 38 363 62 HOH HOH . I 3 HOH A 39 364 63 HOH HOH . I 3 HOH A 40 365 64 HOH HOH . I 3 HOH A 41 366 65 HOH HOH . I 3 HOH A 42 367 66 HOH HOH . I 3 HOH A 43 368 78 HOH HOH . I 3 HOH A 44 369 80 HOH HOH . I 3 HOH A 45 370 27 HOH HOH . I 3 HOH A 46 371 31 HOH HOH . I 3 HOH A 47 372 34 HOH HOH . I 3 HOH A 48 373 3 HOH HOH . I 3 HOH A 49 374 16 HOH HOH . I 3 HOH A 50 375 21 HOH HOH . I 3 HOH A 51 376 24 HOH HOH . I 3 HOH A 52 377 39 HOH HOH . I 3 HOH A 53 378 58 HOH HOH . J 3 HOH B 1 326 27 HOH HOH . J 3 HOH B 2 327 31 HOH HOH . J 3 HOH B 3 328 34 HOH HOH . J 3 HOH B 4 329 42 HOH HOH . J 3 HOH B 5 330 49 HOH HOH . J 3 HOH B 6 331 1 HOH HOH . J 3 HOH B 7 332 2 HOH HOH . J 3 HOH B 8 333 4 HOH HOH . J 3 HOH B 9 334 5 HOH HOH . J 3 HOH B 10 335 6 HOH HOH . J 3 HOH B 11 336 7 HOH HOH . J 3 HOH B 12 337 8 HOH HOH . J 3 HOH B 13 338 9 HOH HOH . J 3 HOH B 14 339 10 HOH HOH . J 3 HOH B 15 340 11 HOH HOH . J 3 HOH B 16 341 12 HOH HOH . J 3 HOH B 17 342 13 HOH HOH . J 3 HOH B 18 343 14 HOH HOH . J 3 HOH B 19 344 15 HOH HOH . J 3 HOH B 20 345 17 HOH HOH . J 3 HOH B 21 346 18 HOH HOH . J 3 HOH B 22 347 19 HOH HOH . J 3 HOH B 23 348 20 HOH HOH . J 3 HOH B 24 349 22 HOH HOH . J 3 HOH B 25 350 23 HOH HOH . J 3 HOH B 26 351 24 HOH HOH . J 3 HOH B 27 352 25 HOH HOH . J 3 HOH B 28 353 26 HOH HOH . J 3 HOH B 29 354 28 HOH HOH . J 3 HOH B 30 355 29 HOH HOH . J 3 HOH B 31 356 30 HOH HOH . J 3 HOH B 32 357 32 HOH HOH . J 3 HOH B 33 358 33 HOH HOH . J 3 HOH B 34 359 35 HOH HOH . J 3 HOH B 35 360 36 HOH HOH . J 3 HOH B 36 361 37 HOH HOH . J 3 HOH B 37 362 38 HOH HOH . J 3 HOH B 38 363 43 HOH HOH . J 3 HOH B 39 364 44 HOH HOH . J 3 HOH B 40 365 45 HOH HOH . J 3 HOH B 41 366 46 HOH HOH . J 3 HOH B 42 367 51 HOH HOH . J 3 HOH B 43 368 52 HOH HOH . J 3 HOH B 44 369 53 HOH HOH . J 3 HOH B 45 370 54 HOH HOH . J 3 HOH B 46 371 55 HOH HOH . J 3 HOH B 47 372 56 HOH HOH . J 3 HOH B 48 373 57 HOH HOH . J 3 HOH B 49 374 61 HOH HOH . J 3 HOH B 50 375 67 HOH HOH . J 3 HOH B 51 376 68 HOH HOH . J 3 HOH B 52 377 69 HOH HOH . J 3 HOH B 53 378 77 HOH HOH . J 3 HOH B 54 379 3 HOH HOH . J 3 HOH B 55 380 16 HOH HOH . J 3 HOH B 56 381 21 HOH HOH . J 3 HOH B 57 382 39 HOH HOH . J 3 HOH B 58 383 50 HOH HOH . J 3 HOH B 59 384 58 HOH HOH . K 3 HOH C 1 326 3 HOH HOH . K 3 HOH C 2 327 16 HOH HOH . K 3 HOH C 3 328 21 HOH HOH . K 3 HOH C 4 329 39 HOH HOH . K 3 HOH C 5 330 70 HOH HOH . K 3 HOH C 6 331 1 HOH HOH . K 3 HOH C 7 332 2 HOH HOH . K 3 HOH C 8 333 4 HOH HOH . K 3 HOH C 9 334 5 HOH HOH . K 3 HOH C 10 335 6 HOH HOH . K 3 HOH C 11 336 7 HOH HOH . K 3 HOH C 12 337 8 HOH HOH . K 3 HOH C 13 338 10 HOH HOH . K 3 HOH C 14 339 11 HOH HOH . K 3 HOH C 15 340 12 HOH HOH . K 3 HOH C 16 341 13 HOH HOH . K 3 HOH C 17 342 15 HOH HOH . K 3 HOH C 18 343 17 HOH HOH . K 3 HOH C 19 344 18 HOH HOH . K 3 HOH C 20 345 19 HOH HOH . K 3 HOH C 21 346 20 HOH HOH . K 3 HOH C 22 347 22 HOH HOH . K 3 HOH C 23 348 23 HOH HOH . K 3 HOH C 24 349 24 HOH HOH . K 3 HOH C 25 350 25 HOH HOH . K 3 HOH C 26 351 26 HOH HOH . K 3 HOH C 27 352 28 HOH HOH . K 3 HOH C 28 353 29 HOH HOH . K 3 HOH C 29 354 30 HOH HOH . K 3 HOH C 30 355 32 HOH HOH . K 3 HOH C 31 356 33 HOH HOH . K 3 HOH C 32 357 35 HOH HOH . K 3 HOH C 33 358 36 HOH HOH . K 3 HOH C 34 359 37 HOH HOH . K 3 HOH C 35 360 38 HOH HOH . K 3 HOH C 36 361 40 HOH HOH . K 3 HOH C 37 362 41 HOH HOH . K 3 HOH C 38 363 43 HOH HOH . K 3 HOH C 39 364 45 HOH HOH . K 3 HOH C 40 365 46 HOH HOH . K 3 HOH C 41 366 55 HOH HOH . K 3 HOH C 42 367 56 HOH HOH . K 3 HOH C 43 368 60 HOH HOH . K 3 HOH C 44 369 71 HOH HOH . K 3 HOH C 45 370 27 HOH HOH . K 3 HOH C 46 371 31 HOH HOH . K 3 HOH C 47 372 34 HOH HOH . K 3 HOH C 48 373 42 HOH HOH . K 3 HOH C 49 374 44 HOH HOH . K 3 HOH C 50 375 59 HOH HOH . L 3 HOH D 1 326 3 HOH HOH . L 3 HOH D 2 327 16 HOH HOH . L 3 HOH D 3 328 21 HOH HOH . L 3 HOH D 4 329 39 HOH HOH . L 3 HOH D 5 330 50 HOH HOH . L 3 HOH D 6 331 9 HOH HOH . L 3 HOH D 7 332 14 HOH HOH . L 3 HOH D 8 333 27 HOH HOH . L 3 HOH D 9 334 31 HOH HOH . L 3 HOH D 10 335 34 HOH HOH . L 3 HOH D 11 336 42 HOH HOH . L 3 HOH D 12 337 44 HOH HOH . L 3 HOH D 13 338 49 HOH HOH . L 3 HOH D 14 339 59 HOH HOH . L 3 HOH D 15 340 1 HOH HOH . L 3 HOH D 16 341 2 HOH HOH . L 3 HOH D 17 342 4 HOH HOH . L 3 HOH D 18 343 5 HOH HOH . L 3 HOH D 19 344 6 HOH HOH . L 3 HOH D 20 345 7 HOH HOH . L 3 HOH D 21 346 8 HOH HOH . L 3 HOH D 22 347 9 HOH HOH . L 3 HOH D 23 348 10 HOH HOH . L 3 HOH D 24 349 11 HOH HOH . L 3 HOH D 25 350 12 HOH HOH . L 3 HOH D 26 351 13 HOH HOH . L 3 HOH D 27 352 14 HOH HOH . L 3 HOH D 28 353 15 HOH HOH . L 3 HOH D 29 354 17 HOH HOH . L 3 HOH D 30 355 18 HOH HOH . L 3 HOH D 31 356 19 HOH HOH . L 3 HOH D 32 357 20 HOH HOH . L 3 HOH D 33 358 22 HOH HOH . L 3 HOH D 34 359 23 HOH HOH . L 3 HOH D 35 360 25 HOH HOH . L 3 HOH D 36 361 26 HOH HOH . L 3 HOH D 37 362 28 HOH HOH . L 3 HOH D 38 363 29 HOH HOH . L 3 HOH D 39 364 30 HOH HOH . L 3 HOH D 40 365 32 HOH HOH . L 3 HOH D 41 366 33 HOH HOH . L 3 HOH D 42 367 35 HOH HOH . L 3 HOH D 43 368 36 HOH HOH . L 3 HOH D 44 369 37 HOH HOH . L 3 HOH D 45 370 38 HOH HOH . L 3 HOH D 46 371 40 HOH HOH . L 3 HOH D 47 372 41 HOH HOH . L 3 HOH D 48 373 45 HOH HOH . L 3 HOH D 49 374 46 HOH HOH . L 3 HOH D 50 375 47 HOH HOH . L 3 HOH D 51 376 48 HOH HOH . L 3 HOH D 52 377 51 HOH HOH . L 3 HOH D 53 378 52 HOH HOH . L 3 HOH D 54 379 53 HOH HOH . L 3 HOH D 55 380 54 HOH HOH . L 3 HOH D 56 381 57 HOH HOH . L 3 HOH D 57 382 60 HOH HOH . L 3 HOH D 58 383 61 HOH HOH . L 3 HOH D 59 384 72 HOH HOH . L 3 HOH D 60 385 73 HOH HOH . L 3 HOH D 61 386 74 HOH HOH . L 3 HOH D 62 387 75 HOH HOH . L 3 HOH D 63 388 76 HOH HOH . L 3 HOH D 64 389 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . G 2 6.26 33.41 39.85 1 33.91 ? P PGA 325 C 1 HETATM 2 O O1P PGA . . . G 2 6.571 34.939 39.45 1 32.92 ? O1P PGA 325 C 1 HETATM 3 O O2P PGA . . . G 2 4.916 33.389 40.55 1 36.36 ? O2P PGA 325 C 1 HETATM 4 O O3P PGA . . . G 2 6.225 32.476 38.698 1 31.92 ? O3P PGA 325 C 1 HETATM 5 O O4P PGA . . . G 2 7.341 33.016 40.846 1 33.62 ? O4P PGA 325 C 1 HETATM 6 C C2 PGA . . . G 2 7.253 35.03 38.207 1 35.56 ? C2 PGA 325 C 1 HETATM 7 C C1 PGA . . . G 2 7.988 36.388 38.315 1 37.6 ? C1 PGA 325 C 1 HETATM 8 O O1 PGA . . . G 2 7.532 37.238 39.272 1 39.46 ? O1 PGA 325 C 1 HETATM 9 O O2 PGA . . . G 2 9.012 36.702 37.502 1 38.77 ? O2 PGA 325 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #